Wall clock time and date at job start Tue Mar 31 2020 07:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47139 * 2 1 4 4 N 1.46500 * 109.47146 * 120.00113 * 2 1 3 5 5 C 1.46506 * 119.99880 * 304.24149 * 4 2 1 6 6 C 1.50703 * 109.46977 * 270.00211 * 5 4 2 7 7 H 1.07993 * 120.00351 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99599 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00390 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99799 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47188 * 59.99605 * 10 8 6 12 12 H 1.48497 * 109.47196 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47176 * 299.99628 * 10 8 6 14 14 C 1.34776 * 120.00296 * 124.24609 * 4 2 1 15 15 O 1.21282 * 120.00103 * 185.39781 * 14 4 2 16 16 C 1.50697 * 119.99956 * 5.39010 * 14 4 2 17 17 C 1.52997 * 109.47174 * 174.87244 * 16 14 4 18 18 N 1.46499 * 109.47487 * 180.02562 * 17 16 14 19 19 C 1.35864 * 119.69827 * 89.99502 * 18 17 16 20 20 N 1.29833 * 123.36307 * 179.74393 * 19 18 17 21 21 C 1.35654 * 121.61712 * 0.26249 * 20 19 18 22 22 C 1.39649 * 121.63978 * 180.02562 * 21 20 19 23 23 C 1.37666 * 119.68135 * 179.97438 * 22 21 20 24 24 C 1.38886 * 120.82185 * 359.97438 * 23 22 21 25 25 C 1.37763 * 120.57054 * 359.97438 * 24 23 22 26 26 C 1.39345 * 119.51651 * 0.04401 * 25 24 23 27 27 C 1.35347 * 119.69650 * 270.26407 * 18 17 16 28 28 O 1.21719 * 121.29907 * 359.96301 * 27 18 17 29 29 H 1.09001 * 109.47145 * 295.64220 * 1 2 3 30 30 H 1.09001 * 109.47140 * 55.64611 * 1 2 3 31 31 H 1.09000 * 109.46938 * 175.64062 * 1 2 3 32 32 H 1.08996 * 109.47416 * 240.00021 * 2 1 3 33 33 H 1.09001 * 109.46941 * 184.57950 * 3 2 1 34 34 H 1.08994 * 109.46845 * 304.58101 * 3 2 1 35 35 H 1.08997 * 109.47030 * 64.58550 * 3 2 1 36 36 H 1.09000 * 109.46954 * 29.99764 * 5 4 2 37 37 H 1.08993 * 109.46911 * 150.00118 * 5 4 2 38 38 H 0.97002 * 120.00276 * 180.02562 * 9 8 6 39 39 H 1.08998 * 109.46945 * 54.87594 * 16 14 4 40 40 H 1.09001 * 109.47540 * 294.87347 * 16 14 4 41 41 H 1.09003 * 109.47322 * 60.00165 * 17 16 14 42 42 H 1.09002 * 109.47126 * 299.99925 * 17 16 14 43 43 H 1.07999 * 118.31784 * 0.03214 * 19 18 17 44 44 H 1.07991 * 120.15749 * 359.95407 * 22 21 20 45 45 H 1.08001 * 119.58461 * 179.97438 * 23 22 21 46 46 H 1.07994 * 119.71382 * 180.02562 * 24 23 22 47 47 H 1.08000 * 120.24359 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5894 -0.2466 2.5248 6 6 2.5497 0.7938 3.0410 7 1 3.3951 1.0940 2.4398 8 6 2.3494 1.3617 4.2813 9 7 1.3202 0.9959 5.0136 10 14 3.5401 2.6509 4.9215 11 1 3.5592 3.8108 3.9945 12 1 3.1053 3.1010 6.2681 13 1 4.9022 2.0659 5.0105 14 6 2.8622 -1.7344 1.0744 15 8 3.1894 -2.3674 2.0558 16 6 3.3992 -2.1150 -0.2813 17 6 4.4244 -3.2400 -0.1262 18 7 4.9469 -3.6097 -1.4440 19 6 6.0469 -2.9797 -1.9329 20 7 6.5724 -3.2537 -3.0881 21 6 6.0451 -4.2021 -3.9022 22 6 6.6102 -4.4976 -5.1446 23 6 6.0420 -5.4684 -5.9383 24 6 4.9127 -6.1594 -5.5190 25 6 4.3377 -5.8866 -4.2972 26 6 4.8970 -4.9073 -3.4786 27 6 4.3262 -4.5719 -2.1656 28 8 3.3375 -5.1414 -1.7418 29 1 -0.3633 0.4447 0.9265 30 1 -0.3633 0.5799 -0.8484 31 1 -0.3633 -1.0247 -0.0781 32 1 1.8933 -0.5138 -0.8899 33 1 3.1269 1.4436 -0.0821 34 1 1.6112 1.9794 -0.8461 35 1 1.7453 1.9321 0.9282 36 1 0.5896 0.1826 2.4592 37 1 1.5756 -1.0978 3.2054 38 1 1.1791 1.3958 5.8861 39 1 3.8768 -1.2488 -0.7391 40 1 2.5797 -2.4550 -0.9144 41 1 3.9469 -4.1063 0.3317 42 1 5.2440 -2.9000 0.5069 43 1 6.5107 -2.2149 -1.3276 44 1 7.4884 -3.9669 -5.4812 45 1 6.4801 -5.6953 -6.8991 46 1 4.4820 -6.9178 -6.1559 47 1 3.4598 -6.4274 -3.9761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069371055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:24 Heat of formation + Delta-G solvation = -22.158557 kcal Electronic energy + Delta-G solvation = -29699.789307 eV Core-core repulsion = 25654.604617 eV Total energy + Delta-G solvation = -4045.184690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.82942 -39.44504 -38.70408 -37.68364 -36.13475 -34.86533 -32.91116 -31.88895 -31.00262 -30.83211 -30.24036 -27.56898 -26.80295 -25.42474 -25.01020 -23.50449 -22.30733 -22.19258 -21.23635 -19.14887 -18.93641 -18.14963 -17.59246 -16.54795 -16.46660 -16.14685 -15.69909 -15.30992 -15.19596 -15.07534 -14.96690 -14.32795 -14.25291 -14.09885 -13.60642 -13.52336 -13.45365 -13.19012 -12.97185 -12.45329 -12.31707 -12.25688 -12.09209 -12.06025 -11.75099 -11.53821 -11.29043 -11.20969 -10.97647 -10.88804 -10.63296 -10.44409 -10.40800 -10.22896 -10.18955 -10.04373 -9.60429 -9.45776 -9.02634 -8.45210 -8.32709 -7.71499 -6.06943 -4.11038 0.25909 0.53395 1.94407 2.20540 2.52257 3.27476 3.28802 3.33875 3.37005 3.68491 3.76552 3.84165 3.98444 4.39385 4.41401 4.51578 4.61093 4.79933 4.84198 4.88420 4.99939 5.02995 5.19473 5.22292 5.27199 5.41569 5.49813 5.57494 5.61070 5.61826 5.74948 5.81517 5.88621 5.99689 6.04193 6.08702 6.12088 6.22530 6.30017 6.35106 6.49226 6.55825 6.91384 7.06556 7.44379 7.48502 7.50763 7.60717 7.89146 8.20866 8.36289 8.84480 9.00330 9.53066 11.01100 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.018719 B = 0.002449 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.412752 B =11431.804598 C =11757.659977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.133 3.867 3 C -0.161 4.161 4 N -0.590 5.590 5 C 0.244 3.756 6 C -0.522 4.522 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.513 3.487 15 O -0.543 6.543 16 C -0.158 4.158 17 C 0.110 3.890 18 N -0.545 5.545 19 C 0.383 3.617 20 N -0.531 5.531 21 C 0.155 3.845 22 C -0.114 4.114 23 C -0.076 4.076 24 C -0.143 4.143 25 C -0.041 4.041 26 C -0.198 4.198 27 C 0.544 3.456 28 O -0.504 6.504 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.036 0.964 37 H 0.043 0.957 38 H 0.264 0.736 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.203 0.797 44 H 0.138 0.862 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.539 -8.372 -21.961 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 C -0.219 4.219 4 N -0.322 5.322 5 C 0.125 3.875 6 C -0.561 4.561 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C 0.299 3.701 15 O -0.421 6.421 16 C -0.199 4.199 17 C -0.012 4.012 18 N -0.267 5.267 19 C 0.096 3.904 20 N -0.252 5.252 21 C 0.045 3.955 22 C -0.133 4.133 23 C -0.095 4.095 24 C -0.162 4.162 25 C -0.060 4.060 26 C -0.204 4.204 27 C 0.337 3.663 28 O -0.377 6.377 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.219 0.781 44 H 0.156 0.844 45 H 0.150 0.850 46 H 0.149 0.851 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.623 -8.742 -21.398 24.339 hybrid contribution -0.067 0.545 0.628 0.835 sum 7.555 -8.196 -20.770 23.572 Atomic orbital electron populations 1.22158 0.95343 1.01725 1.02877 1.20996 0.94405 0.94016 0.87719 1.22198 1.00720 0.95810 1.03181 1.48307 1.45020 1.29919 1.08906 1.19294 0.95430 0.95734 0.77056 1.21377 1.10885 1.21806 1.02056 0.92385 1.24933 0.95552 0.97132 0.96512 1.69918 1.28492 1.43047 1.11795 0.86604 0.81452 0.81600 0.78026 1.20270 1.21253 1.20230 1.19898 0.79918 0.80918 0.89388 1.90689 1.59215 1.52412 1.39792 1.22026 1.00151 0.99251 0.98450 1.21797 0.98815 1.00196 0.80388 1.46822 1.26225 1.33751 1.19881 1.24900 0.82675 0.91848 0.90963 1.68708 1.31848 1.20226 1.04376 1.18862 0.91119 0.91257 0.94224 1.20858 1.01069 0.98983 0.92383 1.21294 0.94811 0.94100 0.99287 1.21178 0.97113 1.01360 0.96523 1.21042 0.98348 0.93957 0.92664 1.20630 1.00024 1.03430 0.96272 1.18465 0.83674 0.79223 0.84950 1.90892 1.24384 1.51140 1.71306 0.90924 0.92204 0.92927 0.91014 0.93068 0.93172 0.89541 0.94610 0.93854 0.92669 0.88931 0.88916 0.87181 0.87526 0.78061 0.84371 0.84977 0.85054 0.84512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.19 37.16 0.34 -2.07 16 2 C 0.13 2.10 3.12 -67.93 -0.21 1.89 16 3 C -0.16 -2.51 8.74 37.16 0.32 -2.19 16 4 N -0.59 -11.82 2.39 -167.47 -0.40 -12.22 16 5 C 0.24 6.08 4.73 -5.19 -0.02 6.06 16 6 C -0.52 -13.93 7.71 -34.44 -0.27 -14.19 16 7 H 0.06 1.52 7.59 -52.49 -0.40 1.13 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 10 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.51 9.95 7.65 -10.99 -0.08 9.87 16 15 O -0.54 -12.72 15.54 5.56 0.09 -12.64 16 16 C -0.16 -2.17 4.35 -27.89 -0.12 -2.29 16 17 C 0.11 1.39 4.66 -4.04 -0.02 1.38 16 18 N -0.55 -6.32 2.61 -118.86 -0.31 -6.63 16 19 C 0.38 3.65 11.41 -90.17 -1.03 2.62 16 20 N -0.53 -5.77 10.37 -12.01 -0.12 -5.90 16 21 C 0.15 1.73 6.63 -84.51 -0.56 1.17 16 22 C -0.11 -1.00 10.03 -39.26 -0.39 -1.40 16 23 C -0.08 -0.54 10.00 -39.55 -0.40 -0.93 16 24 C -0.14 -1.10 10.02 -39.52 -0.40 -1.50 16 25 C -0.04 -0.42 9.68 -39.34 -0.38 -0.80 16 26 C -0.20 -2.40 5.89 -104.77 -0.62 -3.01 16 27 C 0.54 7.47 7.66 -12.43 -0.10 7.38 16 28 O -0.50 -8.34 16.33 5.17 0.08 -8.25 16 29 H 0.07 1.23 6.34 -51.93 -0.33 0.90 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.95 5.85 -51.93 -0.30 0.65 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.63 6.60 -51.93 -0.34 1.29 16 36 H 0.04 0.91 6.13 -51.93 -0.32 0.59 16 37 H 0.04 1.25 7.35 -51.93 -0.38 0.87 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.09 1.06 7.85 -51.93 -0.41 0.66 16 40 H 0.09 1.26 7.73 -51.93 -0.40 0.86 16 41 H 0.11 1.65 7.37 -51.93 -0.38 1.27 16 42 H 0.11 1.20 7.99 -51.93 -0.41 0.78 16 43 H 0.20 1.17 7.99 -52.49 -0.42 0.75 16 44 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 46 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 47 H 0.14 1.35 7.83 -52.49 -0.41 0.94 16 LS Contribution 389.99 15.07 5.88 5.88 Total: -1.00 -34.20 389.99 -9.70 -43.90 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.61 Total: 1.33 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -4.03 Total: 3.55 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.10 Total: -49.88 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: 0.17 Total: -20.89 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.20 -9.70 -43.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069371055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.739 kcal (2) G-P(sol) polarization free energy of solvation -34.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds