Wall clock time and date at job start Tue Mar 31 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47184 * 2 1 4 4 N 1.46503 * 109.47022 * 119.99713 * 2 1 3 5 5 C 1.46505 * 120.00007 * 304.24284 * 4 2 1 6 6 C 1.50696 * 109.46818 * 270.00092 * 5 4 2 7 7 H 1.08000 * 120.00388 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99794 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99819 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00056 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47215 * 89.99779 * 10 8 6 12 12 H 1.48497 * 109.47161 * 210.00147 * 10 8 6 13 13 H 1.48497 * 109.46956 * 329.99919 * 10 8 6 14 14 C 1.34773 * 119.99834 * 124.23996 * 4 2 1 15 15 O 1.21284 * 120.00160 * 185.39500 * 14 4 2 16 16 C 1.50700 * 120.00268 * 5.40205 * 14 4 2 17 17 C 1.52995 * 109.47280 * 174.86808 * 16 14 4 18 18 C 1.50705 * 109.47017 * 179.97438 * 17 16 14 19 19 N 1.30361 * 125.48056 * 89.69651 * 18 17 16 20 20 C 1.34139 * 108.90197 * 179.89501 * 19 18 17 21 21 C 1.35777 * 107.51316 * 0.35920 * 20 19 18 22 22 C 1.47825 * 126.58043 * 179.80418 * 21 20 19 23 23 C 1.39573 * 120.14695 * 179.70163 * 22 21 20 24 24 C 1.37954 * 119.85870 * 179.71993 * 23 22 21 25 25 C 1.38368 * 120.14026 * 0.53428 * 24 23 22 26 26 C 1.38350 * 120.29163 * 359.76388 * 25 24 23 27 27 C 1.37960 * 120.14870 * 359.95246 * 26 25 24 28 28 O 1.33998 * 125.48076 * 269.99326 * 18 17 16 29 29 H 1.09002 * 109.46886 * 295.64832 * 1 2 3 30 30 H 1.09003 * 109.47149 * 55.64554 * 1 2 3 31 31 H 1.08996 * 109.47040 * 175.64656 * 1 2 3 32 32 H 1.09000 * 109.46922 * 239.99393 * 2 1 3 33 33 H 1.09001 * 109.47419 * 184.58731 * 3 2 1 34 34 H 1.09006 * 109.47084 * 304.57928 * 3 2 1 35 35 H 1.08999 * 109.47698 * 64.58297 * 3 2 1 36 36 H 1.09001 * 109.46983 * 29.99809 * 5 4 2 37 37 H 1.09001 * 109.46820 * 149.99678 * 5 4 2 38 38 H 0.97005 * 120.00212 * 179.97438 * 9 8 6 39 39 H 1.08996 * 109.47035 * 54.86249 * 16 14 4 40 40 H 1.09006 * 109.46521 * 294.86519 * 16 14 4 41 41 H 1.09005 * 109.47500 * 59.99757 * 17 16 14 42 42 H 1.09003 * 109.47320 * 299.99817 * 17 16 14 43 43 H 1.07997 * 126.24332 * 180.14410 * 20 19 18 44 44 H 1.08000 * 120.06836 * 359.97438 * 23 22 21 45 45 H 1.07999 * 119.93282 * 180.27415 * 24 23 22 46 46 H 1.08003 * 119.84769 * 179.74601 * 25 24 23 47 47 H 1.08001 * 119.92579 * 179.97438 * 26 25 24 48 48 H 1.07994 * 120.07419 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.5894 -0.2465 2.5248 6 6 2.5497 0.7939 3.0409 7 1 3.3952 1.0940 2.4397 8 6 2.3495 1.3619 4.2812 9 7 3.1878 2.2695 4.7319 10 14 0.8875 0.8424 5.3215 11 1 1.2754 -0.3028 6.1837 12 1 0.4570 1.9799 6.1734 13 1 -0.2321 0.4370 4.4342 14 6 2.8621 -1.7344 1.0744 15 8 3.1893 -2.3674 2.0559 16 6 3.3992 -2.1150 -0.2812 17 6 4.4244 -3.2401 -0.1261 18 6 4.9610 -3.6211 -1.4818 19 7 6.0008 -3.0892 -2.0609 20 6 6.1822 -3.6766 -3.2531 21 6 5.2009 -4.6025 -3.4059 22 6 5.0009 -5.4901 -4.5709 23 6 3.9447 -6.4025 -4.5839 24 6 3.7601 -7.2240 -5.6767 25 6 4.6259 -7.1525 -6.7537 26 6 5.6784 -6.2547 -6.7446 27 6 5.8708 -5.4235 -5.6605 28 8 4.4427 -4.5572 -2.2884 29 1 -0.3633 0.4448 0.9264 30 1 -0.3633 0.5799 -0.8484 31 1 -0.3633 -1.0247 -0.0780 32 1 1.8933 -0.5139 -0.8899 33 1 3.1269 1.4436 -0.0822 34 1 1.6112 1.9794 -0.8462 35 1 1.7454 1.9321 0.9282 36 1 0.5896 0.1827 2.4592 37 1 1.5755 -1.0977 3.2055 38 1 3.0468 2.6694 5.6043 39 1 3.8768 -1.2488 -0.7390 40 1 2.5796 -2.4550 -0.9143 41 1 3.9468 -4.1064 0.3318 42 1 5.2440 -2.9002 0.5070 43 1 6.9638 -3.4515 -3.9635 44 1 3.2710 -6.4623 -3.7420 45 1 2.9406 -7.9273 -5.6899 46 1 4.4794 -7.8007 -7.6051 47 1 6.3509 -6.2042 -7.5882 48 1 6.6925 -4.7228 -5.6548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069413768.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:26 Heat of formation + Delta-G solvation = 7.308098 kcal Electronic energy + Delta-G solvation = -28745.549061 eV Core-core repulsion = 24767.068052 eV Total energy + Delta-G solvation = -3978.481009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.46319 -39.47309 -39.36131 -36.20476 -35.01353 -34.03036 -32.77829 -32.27913 -31.40509 -31.02006 -29.04082 -27.77099 -26.79461 -25.17925 -23.84127 -22.92655 -22.14899 -21.66466 -21.29934 -20.83027 -18.13876 -18.06599 -17.12552 -16.87564 -16.69865 -16.35493 -16.06678 -15.29035 -15.23789 -15.19226 -14.31571 -14.22275 -13.94910 -13.76249 -13.59206 -13.49604 -13.34051 -13.28002 -12.86432 -12.58984 -12.38607 -12.25678 -11.89470 -11.85652 -11.65376 -11.52510 -11.48533 -11.37854 -11.16641 -10.93054 -10.86985 -10.67083 -10.51648 -10.33890 -10.14283 -10.08630 -9.46672 -9.42915 -9.07873 -8.56850 -8.29633 -7.72519 -6.07159 -4.04850 0.29991 0.93725 1.65620 2.34517 2.53739 3.27589 3.29289 3.35270 3.37648 3.41817 3.66652 3.97456 4.26951 4.40481 4.48424 4.50054 4.66532 4.75050 4.88714 4.94977 4.97282 5.03722 5.16181 5.19851 5.25813 5.33338 5.45837 5.49310 5.53192 5.57672 5.60741 5.64191 5.88083 5.94660 5.96794 6.00909 6.04753 6.09129 6.10894 6.15053 6.23940 6.29668 6.45792 6.50609 6.77688 6.97415 7.01611 7.35230 7.57761 7.62842 8.24105 8.48581 8.90056 8.98495 9.53269 11.05807 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.002058 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.705461 B =13599.094266 C =13839.844098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.133 3.867 3 C -0.162 4.162 4 N -0.586 5.586 5 C 0.213 3.787 6 C -0.523 4.523 7 H 0.078 0.922 8 C 0.072 3.928 9 N -0.896 5.896 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.513 3.487 15 O -0.543 6.543 16 C -0.137 4.137 17 C -0.010 4.010 18 C 0.212 3.788 19 N -0.478 5.478 20 C -0.014 4.014 21 C -0.021 4.021 22 C -0.008 4.008 23 C -0.102 4.102 24 C -0.116 4.116 25 C -0.115 4.115 26 C -0.115 4.115 27 C -0.099 4.099 28 O -0.194 6.194 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.032 0.968 37 H 0.036 0.964 38 H 0.264 0.736 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.118 0.882 43 H 0.185 0.815 44 H 0.129 0.871 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.130 0.870 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 -15.630 -24.439 29.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 C -0.220 4.220 4 N -0.318 5.318 5 C 0.093 3.907 6 C -0.562 4.562 7 H 0.096 0.904 8 C -0.131 4.131 9 N -0.535 5.535 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.191 1.191 14 C 0.300 3.700 15 O -0.421 6.421 16 C -0.178 4.178 17 C -0.048 4.048 18 C 0.007 3.993 19 N -0.206 5.206 20 C -0.154 4.154 21 C -0.074 4.074 22 C -0.008 4.008 23 C -0.120 4.120 24 C -0.134 4.134 25 C -0.133 4.133 26 C -0.133 4.133 27 C -0.117 4.117 28 O -0.081 6.081 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.136 0.864 43 H 0.202 0.798 44 H 0.147 0.853 45 H 0.146 0.854 46 H 0.143 0.857 47 H 0.148 0.852 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.807 -15.366 -23.445 28.043 hybrid contribution -1.023 -0.546 0.216 1.180 sum -0.217 -15.913 -23.228 28.157 Atomic orbital electron populations 1.22171 0.95493 1.01655 1.02798 1.21039 0.94126 0.94373 0.87593 1.22201 1.01224 0.95410 1.03167 1.47985 1.45504 1.30178 1.08122 1.19668 0.95770 0.95880 0.79428 1.21342 1.11440 1.20655 1.02755 0.90437 1.24855 0.96209 0.94753 0.97253 1.69892 1.36634 1.27677 1.19304 0.86897 0.83474 0.78522 0.81070 1.19979 1.21186 1.19143 1.20060 0.79369 0.80684 0.89885 1.90677 1.58830 1.52676 1.39885 1.21678 0.99099 0.99488 0.97570 1.19942 1.00237 0.99806 0.84849 1.26563 0.90757 0.86661 0.95339 1.70445 1.16397 1.26572 1.07188 1.23353 1.00492 0.95839 0.95749 1.21359 0.95027 1.02590 0.88379 1.17635 0.97256 0.95432 0.90503 1.21320 0.96938 0.94903 0.98881 1.21129 0.99622 0.99171 0.93446 1.21315 0.94942 0.98535 0.98524 1.21066 0.98248 0.95875 0.98107 1.21063 0.98636 0.99576 0.92411 1.84446 1.49001 1.49783 1.24915 0.91313 0.91947 0.92905 0.90540 0.92699 0.93173 0.89482 0.94990 0.94553 0.92627 0.88368 0.89093 0.87874 0.86365 0.79764 0.85344 0.85438 0.85651 0.85250 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.19 37.16 0.34 -1.90 16 2 C 0.13 2.08 3.12 -67.93 -0.21 1.86 16 3 C -0.16 -2.67 8.74 37.15 0.32 -2.35 16 4 N -0.59 -11.63 2.39 -167.47 -0.40 -12.03 16 5 C 0.21 5.05 3.80 -5.19 -0.02 5.03 16 6 C -0.52 -14.49 8.27 -34.44 -0.28 -14.78 16 7 H 0.08 2.35 7.84 -52.49 -0.41 1.94 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.90 -27.24 13.96 55.43 0.77 -26.46 16 10 Si 0.87 21.35 27.47 -169.99 -4.67 16.68 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 14 C 0.51 9.96 7.65 -10.99 -0.08 9.88 16 15 O -0.54 -12.59 15.54 5.55 0.09 -12.51 16 16 C -0.14 -1.96 4.01 -27.89 -0.11 -2.07 16 17 C -0.01 -0.14 5.15 -27.88 -0.14 -0.28 16 18 C 0.21 2.91 7.58 -12.90 -0.10 2.81 16 19 N -0.48 -6.86 11.27 -10.82 -0.12 -6.98 16 20 C -0.01 -0.16 11.29 -17.43 -0.20 -0.36 16 21 C -0.02 -0.24 7.07 -36.54 -0.26 -0.50 16 22 C -0.01 -0.07 5.87 -104.98 -0.62 -0.69 16 23 C -0.10 -0.90 9.73 -39.19 -0.38 -1.29 16 24 C -0.12 -0.80 10.03 -39.64 -0.40 -1.20 16 25 C -0.12 -0.70 10.04 -39.49 -0.40 -1.10 16 26 C -0.12 -0.71 10.03 -39.64 -0.40 -1.11 16 27 C -0.10 -0.74 9.58 -39.18 -0.38 -1.11 16 28 O -0.19 -2.54 10.59 4.24 0.04 -2.50 16 29 H 0.07 1.07 6.34 -51.93 -0.33 0.74 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.99 5.85 -51.93 -0.30 0.69 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.73 6.60 -51.93 -0.34 1.38 16 36 H 0.03 0.73 5.19 -51.93 -0.27 0.46 16 37 H 0.04 0.93 6.78 -51.93 -0.35 0.58 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.10 1.36 7.85 -51.93 -0.41 0.95 16 40 H 0.09 1.09 7.73 -51.93 -0.40 0.69 16 41 H 0.10 1.35 8.04 -51.93 -0.42 0.93 16 42 H 0.12 1.74 8.14 -51.93 -0.42 1.32 16 43 H 0.19 1.53 7.30 -52.49 -0.38 1.15 16 44 H 0.13 1.11 7.95 -52.49 -0.42 0.69 16 45 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 46 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 47 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 48 H 0.13 0.72 7.04 -52.49 -0.37 0.35 16 LS Contribution 396.30 15.07 5.97 5.97 Total: -1.00 -34.30 396.30 -8.67 -42.98 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.95 Total: 2.04 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -3.41 Total: -7.20 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.25 Total: -45.47 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.13 Total: -15.01 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.30 -8.67 -42.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069413768.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.286 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds