Wall clock time and date at job start Tue Mar 31 2020 05:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38063 * 126.31268 * 2 1 4 4 C 1.47413 * 126.41379 * 359.94238 * 3 2 1 5 5 O 1.21607 * 119.99612 * 51.19490 * 4 3 2 6 6 N 1.34773 * 120.00282 * 231.19950 * 4 3 2 7 7 C 1.46500 * 119.99908 * 175.70838 * 6 4 3 8 8 C 1.50696 * 109.46851 * 90.00131 * 7 6 4 9 9 H 1.08001 * 120.00332 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99825 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99917 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00195 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47141 * 90.00348 * 12 10 8 14 14 H 1.48496 * 109.47254 * 210.00180 * 12 10 8 15 15 H 1.48503 * 109.47241 * 330.00392 * 12 10 8 16 16 C 1.46506 * 119.99914 * 355.71147 * 6 4 3 17 17 C 1.52998 * 109.46878 * 124.90854 * 16 6 4 18 18 C 1.52996 * 109.46614 * 244.90682 * 16 6 4 19 19 C 1.41334 * 107.18180 * 179.97438 * 3 2 1 20 20 N 1.30474 * 108.06832 * 359.97438 * 19 3 2 21 21 N 1.34546 * 126.30572 * 179.97438 * 2 1 3 22 22 C 1.40144 * 125.77352 * 0.04322 * 21 2 1 23 23 C 1.38874 * 120.06630 * 311.48355 * 22 21 2 24 24 C 1.38096 * 119.93053 * 179.74438 * 23 22 21 25 25 C 1.38299 * 120.06808 * 0.51172 * 24 23 22 26 26 C 1.38259 * 120.13667 * 359.76192 * 25 24 23 27 27 C 1.38143 * 120.06641 * 359.97438 * 26 25 24 28 28 C 1.50699 * 120.03243 * 180.02562 * 27 26 25 29 29 H 1.09006 * 109.47047 * 274.73774 * 1 2 3 30 30 H 1.08997 * 109.47135 * 34.72970 * 1 2 3 31 31 H 1.08993 * 109.47680 * 154.73676 * 1 2 3 32 32 H 1.08998 * 109.47133 * 210.00245 * 7 6 4 33 33 H 1.08999 * 109.47425 * 329.99740 * 7 6 4 34 34 H 0.97009 * 120.00200 * 179.97438 * 11 10 8 35 35 H 1.08993 * 109.46754 * 4.90647 * 16 6 4 36 36 H 1.09003 * 109.47091 * 60.00451 * 17 16 6 37 37 H 1.08997 * 109.46871 * 179.97438 * 17 16 6 38 38 H 1.08993 * 109.47654 * 299.99739 * 17 16 6 39 39 H 1.08997 * 109.47291 * 60.00249 * 18 16 6 40 40 H 1.09003 * 109.46767 * 179.97438 * 18 16 6 41 41 H 1.09001 * 109.47633 * 300.00346 * 18 16 6 42 42 H 1.08003 * 125.97024 * 179.97438 * 19 3 2 43 43 H 1.08006 * 120.03197 * 0.02562 * 23 22 21 44 44 H 1.08000 * 119.96317 * 180.25685 * 24 23 22 45 45 H 1.08001 * 119.93683 * 179.74485 * 25 24 23 46 46 H 1.07995 * 119.96969 * 179.97438 * 26 25 24 47 47 H 1.08991 * 109.47574 * 274.12911 * 28 27 26 48 48 H 1.09002 * 109.47152 * 34.13688 * 28 27 26 49 49 H 1.09000 * 109.46748 * 154.12543 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1125 0.0000 4 6 1.8868 2.5202 -0.0012 5 8 1.0754 2.9052 0.8186 6 7 2.3858 3.3803 -0.9109 7 6 1.8821 4.7546 -0.9729 8 6 2.7039 5.6322 -0.0644 9 1 3.5195 5.2086 0.5028 10 6 2.4139 6.9758 0.0435 11 7 3.1314 7.7418 0.8359 12 14 1.0028 7.7084 -0.9370 13 1 -0.2477 7.6286 -0.1400 14 1 1.3014 9.1294 -1.2482 15 1 0.8327 6.9497 -2.2022 16 6 3.4319 2.9409 -1.8378 17 6 2.9806 3.2009 -3.2764 18 6 4.7197 3.7184 -1.5588 19 6 3.6598 0.6493 0.0006 20 7 3.6356 -0.6552 0.0015 21 7 2.3036 -1.0843 0.0005 22 6 1.8724 -2.4177 0.0002 23 6 0.9002 -2.8347 0.9000 24 6 0.4736 -4.1481 0.8938 25 6 1.0209 -5.0503 -0.0002 26 6 1.9930 -4.6394 -0.8934 27 6 2.4201 -3.3257 -0.8957 28 6 3.4792 -2.8786 -1.8700 29 1 -0.3633 0.0849 1.0242 30 1 -0.3633 0.8446 -0.5854 31 1 -0.3634 -0.9293 -0.4385 32 1 1.9546 5.1223 -1.9964 33 1 0.8404 4.7746 -0.6527 34 1 2.9276 8.6872 0.9116 35 1 3.6141 1.8751 -1.7011 36 1 2.7984 4.2669 -3.4130 37 1 3.7590 2.8745 -3.9659 38 1 2.0631 2.6471 -3.4751 39 1 5.0412 3.5332 -0.5339 40 1 5.4981 3.3912 -2.2481 41 1 4.5375 4.7844 -1.6954 42 1 4.5456 1.2672 0.0004 43 1 0.4751 -2.1315 1.6009 44 1 -0.2854 -4.4720 1.5905 45 1 0.6886 -6.0779 -0.0005 46 1 2.4189 -5.3463 -1.5901 47 1 4.4656 -3.0746 -1.4498 48 1 3.3672 -3.4270 -2.8054 49 1 3.3708 -1.8108 -2.0598 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069416418.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:00 Heat of formation + Delta-G solvation = 74.791962 kcal Electronic energy + Delta-G solvation = -30319.741668 eV Core-core repulsion = 26441.905641 eV Total energy + Delta-G solvation = -3877.836027 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.81609 -39.59891 -38.64327 -35.95062 -33.89226 -33.28980 -32.69141 -31.83546 -30.93482 -29.74098 -28.33693 -27.10433 -26.87407 -26.72765 -23.79284 -22.67605 -22.41473 -21.73533 -20.61339 -20.11841 -18.13083 -17.58521 -16.82973 -16.52890 -16.23186 -15.85964 -15.30664 -15.09135 -14.60533 -14.23896 -14.16470 -13.95965 -13.77743 -13.56794 -13.42942 -13.29724 -13.06839 -12.91929 -12.58576 -12.47643 -12.44392 -12.31433 -12.05456 -11.85656 -11.70429 -11.61787 -11.56537 -11.39004 -10.98294 -10.82430 -10.80398 -10.51187 -10.34985 -10.05504 -9.90704 -9.40843 -9.19579 -9.05948 -8.88979 -8.52599 -8.26900 -7.62329 -6.02387 -3.99211 0.64131 0.93365 1.78276 2.25145 2.45513 3.28238 3.32018 3.37879 3.39957 3.61184 3.93680 4.40286 4.43333 4.44343 4.52255 4.63019 4.76881 4.89151 4.91197 5.09196 5.18143 5.28795 5.31518 5.34850 5.40139 5.45727 5.46778 5.51145 5.55397 5.60294 5.72274 5.83030 5.90219 5.91433 5.96504 6.02822 6.06299 6.12902 6.16317 6.29395 6.35703 6.38568 6.50873 6.56430 6.84819 7.01360 7.04030 7.05403 7.45322 7.57158 7.68147 8.35844 8.54151 9.01533 9.08255 9.58472 11.10889 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020402 B = 0.002937 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.062185 B = 9531.614613 C =10117.435758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.135 3.865 3 C -0.262 4.262 4 C 0.584 3.416 5 O -0.536 6.536 6 N -0.580 5.580 7 C 0.216 3.784 8 C -0.518 4.518 9 H 0.078 0.922 10 C 0.071 3.929 11 N -0.899 5.899 12 Si 0.872 3.128 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.266 1.266 16 C 0.129 3.871 17 C -0.161 4.161 18 C -0.160 4.160 19 C 0.086 3.914 20 N -0.290 5.290 21 N -0.321 5.321 22 C 0.146 3.854 23 C -0.115 4.115 24 C -0.110 4.110 25 C -0.113 4.113 26 C -0.110 4.110 27 C -0.068 4.068 28 C -0.110 4.110 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.263 0.737 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.194 0.806 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.128 0.872 46 H 0.131 0.869 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.522 -25.280 -7.256 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.008 3.992 3 C -0.276 4.276 4 C 0.370 3.630 5 O -0.414 6.414 6 N -0.311 5.311 7 C 0.096 3.904 8 C -0.557 4.557 9 H 0.096 0.904 10 C -0.131 4.131 11 N -0.537 5.537 12 Si 0.699 3.301 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.191 1.191 16 C 0.025 3.975 17 C -0.219 4.219 18 C -0.218 4.218 19 C -0.101 4.101 20 N -0.107 5.107 21 N -0.096 5.096 22 C 0.055 3.945 23 C -0.135 4.135 24 C -0.129 4.129 25 C -0.132 4.132 26 C -0.128 4.128 27 C -0.070 4.070 28 C -0.167 4.167 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.211 0.789 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.146 0.854 46 H 0.149 0.851 47 H 0.097 0.903 48 H 0.084 0.916 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.242 -25.978 -6.777 26.940 hybrid contribution -0.959 1.372 -0.282 1.697 sum -3.201 -24.606 -7.058 25.798 Atomic orbital electron populations 1.20564 0.86463 1.03649 1.04429 1.21403 0.94617 0.85564 0.97659 1.20286 0.92888 0.94392 1.20015 1.17145 0.81523 0.83198 0.81143 1.90758 1.35095 1.78249 1.37260 1.47869 1.37760 1.12613 1.32814 1.19644 0.95737 0.77720 0.97331 1.21344 1.16403 0.92565 1.25374 0.90434 1.24850 0.96073 0.97030 0.95141 1.69897 1.39960 1.05924 1.37964 0.86918 0.83527 0.78569 0.81066 1.20035 1.21235 1.19119 1.21154 0.88468 0.98753 0.89122 1.22144 1.00871 1.02975 0.95909 1.22189 0.95306 1.03275 1.01023 1.24199 0.97547 0.91534 0.96833 1.77306 0.94935 1.12996 1.25506 1.45384 1.04419 1.03129 1.56683 1.17271 0.98359 0.81049 0.97784 1.21181 0.97827 0.97037 0.97459 1.21003 1.00289 0.92263 0.99358 1.21251 0.96511 0.99908 0.95502 1.20971 0.97654 0.94518 0.99682 1.19905 0.98103 0.93200 0.95791 1.20768 0.96953 1.02336 0.96647 0.89136 0.89104 0.91030 0.94949 0.94887 0.92711 0.89935 0.91478 0.92159 0.93027 0.92616 0.93161 0.89835 0.78900 0.85046 0.85014 0.85379 0.85136 0.90308 0.91589 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 8.89 36.00 0.32 -0.83 16 2 C 0.13 2.02 6.84 -81.47 -0.56 1.47 16 3 C -0.26 -4.52 5.08 -105.05 -0.53 -5.06 16 4 C 0.58 12.37 7.25 -12.53 -0.09 12.28 16 5 O -0.54 -13.45 16.68 5.27 0.09 -13.36 16 6 N -0.58 -11.99 2.39 -168.74 -0.40 -12.39 16 7 C 0.22 5.20 3.76 -5.20 -0.02 5.19 16 8 C -0.52 -14.54 8.40 -34.44 -0.29 -14.83 16 9 H 0.08 2.39 7.84 -52.49 -0.41 1.97 16 10 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 11 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 12 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 13 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 15 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 16 C 0.13 2.13 2.78 -67.93 -0.19 1.94 16 17 C -0.16 -2.34 9.07 37.16 0.34 -2.00 16 18 C -0.16 -2.66 8.61 37.16 0.32 -2.34 16 19 C 0.09 1.33 9.64 -16.95 -0.16 1.17 16 20 N -0.29 -4.34 10.65 30.88 0.33 -4.02 16 21 N -0.32 -4.51 3.04 -6.51 -0.02 -4.52 16 22 C 0.15 1.74 5.86 -83.61 -0.49 1.25 16 23 C -0.11 -1.14 8.49 -39.40 -0.33 -1.48 16 24 C -0.11 -0.84 10.04 -39.61 -0.40 -1.24 16 25 C -0.11 -0.79 10.04 -39.55 -0.40 -1.19 16 26 C -0.11 -0.87 9.71 -39.61 -0.38 -1.25 16 27 C -0.07 -0.70 5.90 -104.44 -0.62 -1.32 16 28 C -0.11 -1.08 9.14 36.01 0.33 -0.75 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.20 8.08 -51.93 -0.42 0.78 16 31 H 0.07 0.71 7.15 -51.93 -0.37 0.34 16 32 H 0.03 0.75 5.24 -51.93 -0.27 0.47 16 33 H 0.03 0.85 6.91 -51.93 -0.36 0.50 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.08 1.23 4.42 -51.93 -0.23 1.00 16 36 H 0.07 1.07 6.52 -51.93 -0.34 0.73 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.97 8.07 -51.93 -0.42 0.55 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.64 6.92 -51.93 -0.36 1.29 16 42 H 0.19 2.65 7.61 -52.48 -0.40 2.25 16 43 H 0.13 1.26 7.51 -52.48 -0.39 0.87 16 44 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 46 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 49 H 0.07 0.83 6.60 -51.93 -0.34 0.49 16 LS Contribution 394.08 15.07 5.94 5.94 Total: -1.00 -34.55 394.08 -8.50 -43.06 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.29 Total: 2.35 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -3.25 Total: -7.06 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.68 Total: -47.71 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.55 -8.50 -43.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069416418.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.849 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds