Wall clock time and date at job start Tue Mar 31 2020 06:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99606 * 2 1 4 4 C 1.53003 * 109.46640 * 180.02562 * 3 2 1 5 5 N 1.46490 * 109.47171 * 65.00376 * 4 3 2 6 6 C 1.46501 * 120.00207 * 275.00109 * 5 4 3 7 7 C 1.50704 * 109.46802 * 274.99902 * 6 5 4 8 8 H 1.07996 * 120.00055 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00086 * 179.97438 * 7 6 5 10 10 N 1.31523 * 119.99861 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00355 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46468 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47308 * 119.99640 * 11 9 7 14 14 H 1.48503 * 109.47120 * 240.00232 * 11 9 7 15 15 S 1.65605 * 120.00048 * 94.99822 * 5 4 3 16 16 O 1.42108 * 106.40193 * 156.46063 * 15 5 4 17 17 O 1.42092 * 106.40345 * 23.53868 * 15 5 4 18 18 C 1.76200 * 107.21785 * 269.99962 * 15 5 4 19 19 C 1.38281 * 119.94406 * 90.00059 * 18 15 5 20 20 C 1.38130 * 120.05819 * 180.02562 * 19 18 15 21 21 C 1.38757 * 119.94053 * 359.97438 * 20 19 18 22 22 O 1.35896 * 120.05265 * 180.02562 * 21 20 19 23 23 C 1.42905 * 117.00039 * 359.97438 * 22 21 20 24 24 C 1.38709 * 119.88984 * 0.27738 * 21 20 19 25 25 C 1.50701 * 120.02948 * 179.72382 * 24 21 20 26 26 C 1.38166 * 119.94120 * 359.49101 * 24 21 20 27 27 H 1.08998 * 109.47017 * 299.99544 * 1 2 3 28 28 H 1.08998 * 109.47257 * 59.99657 * 1 2 3 29 29 H 1.09000 * 109.46993 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46941 * 60.00742 * 3 2 1 31 31 H 1.08992 * 109.47572 * 300.00164 * 3 2 1 32 32 H 1.09004 * 109.47422 * 305.00105 * 4 3 2 33 33 H 1.09007 * 109.46899 * 185.00249 * 4 3 2 34 34 H 1.08994 * 109.47284 * 34.99280 * 6 5 4 35 35 H 1.08994 * 109.47715 * 155.00149 * 6 5 4 36 36 H 0.96997 * 119.99842 * 180.02562 * 10 9 7 37 37 H 1.07996 * 119.97385 * 0.02562 * 19 18 15 38 38 H 1.07997 * 120.02883 * 179.97438 * 20 19 18 39 39 H 1.09001 * 109.46558 * 60.00270 * 23 22 21 40 40 H 1.09001 * 109.47103 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.47187 * 300.00222 * 23 22 21 42 42 H 1.08999 * 109.46852 * 89.99583 * 25 24 21 43 43 H 1.08994 * 109.46996 * 210.00468 * 25 24 21 44 44 H 1.08996 * 109.46797 * 330.00359 * 25 24 21 45 45 H 1.08009 * 119.97198 * 180.23071 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0003 -0.8949 -1.3783 7 6 5.2993 -1.4245 -0.8277 8 1 6.0332 -0.7422 -0.4249 9 6 5.5509 -2.7801 -0.8381 10 7 4.6569 -3.6110 -1.3281 11 14 7.1608 -3.4367 -0.1549 12 1 7.9893 -2.3051 0.3334 13 1 6.8794 -4.3658 0.9687 14 1 7.8936 -4.1608 -1.2244 15 16 4.4453 1.5132 -2.5262 16 8 5.3006 0.7117 -3.3297 17 8 4.8425 2.7601 -1.9727 18 6 3.0090 1.8340 -3.4952 19 6 2.2268 2.9416 -3.2242 20 6 1.1001 3.1951 -3.9820 21 6 0.7537 2.3373 -5.0162 22 8 -0.3541 2.5847 -5.7635 23 6 -1.1165 3.7461 -5.4286 24 6 1.5370 1.2240 -5.2826 25 6 1.1603 0.2869 -6.4011 26 6 2.6657 0.9776 -4.5248 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8515 0.5682 0.8409 33 1 3.9785 2.1766 0.0890 34 1 3.1678 -1.3218 -0.8191 35 1 3.9118 -1.1708 -2.4290 36 1 4.8337 -4.5647 -1.3351 37 1 2.4971 3.6092 -2.4195 38 1 0.4893 4.0601 -3.7697 39 1 -0.4909 4.6329 -5.5297 40 1 -1.9709 3.8261 -6.1007 41 1 -1.4689 3.6653 -4.4003 42 1 1.6347 0.6156 -7.3258 43 1 1.4959 -0.7214 -6.1588 44 1 0.0777 0.2889 -6.5276 45 1 3.2781 0.1129 -4.7342 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069416809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:56 Heat of formation + Delta-G solvation = -126.573027 kcal Electronic energy + Delta-G solvation = -29555.917393 eV Core-core repulsion = 25473.523057 eV Total energy + Delta-G solvation = -4082.394336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.40148 -37.80944 -37.58102 -36.60002 -35.33378 -35.11412 -32.96089 -32.45734 -30.43693 -29.49564 -27.89349 -26.81848 -26.71417 -25.66232 -22.80719 -22.68049 -21.93623 -21.65002 -18.25990 -18.22246 -17.27157 -16.76100 -16.66918 -16.15508 -16.06669 -15.86266 -15.65908 -15.01007 -14.65411 -14.58943 -14.34883 -14.05568 -13.65737 -13.50513 -13.25767 -13.14071 -12.56817 -12.38159 -12.28209 -12.18273 -12.03445 -11.97190 -11.90323 -11.58830 -11.45180 -11.39015 -11.19889 -11.00868 -10.97865 -10.81339 -10.55973 -10.49956 -10.26817 -9.92680 -9.63369 -9.35107 -8.96456 -8.47858 -8.31993 -7.95885 -5.94812 -3.97534 0.86633 1.16586 1.25152 2.97208 3.35949 3.38036 3.45296 3.50614 3.81647 4.13291 4.40484 4.52087 4.54523 4.62290 4.76277 4.83243 4.97554 5.13487 5.22818 5.26138 5.34352 5.34854 5.40697 5.44594 5.53283 5.55314 5.59734 5.63241 5.68826 5.75936 5.83124 5.89466 5.97812 6.15327 6.17387 6.26951 6.33289 6.58145 6.64493 7.12511 7.45810 7.49578 7.53408 7.80581 8.03257 8.33978 9.04558 9.66114 11.13766 Molecular weight = 343.13amu Principal moments of inertia in cm(-1) A = 0.012733 B = 0.004073 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.522163 B = 6873.543299 C = 7191.769030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.039 3.961 4 C 0.122 3.878 5 N -0.973 5.973 6 C 0.256 3.744 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.283 1.283 15 S 2.684 3.316 16 O -0.941 6.941 17 O -0.981 6.981 18 C -0.701 4.701 19 C 0.008 3.992 20 C -0.229 4.229 21 C 0.168 3.832 22 O -0.311 6.311 23 C 0.025 3.975 24 C -0.136 4.136 25 C -0.105 4.105 26 C 0.022 3.978 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.041 0.959 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.034 0.966 36 H 0.261 0.739 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.057 0.943 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.867 13.834 -4.512 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.039 4.039 4 C -0.005 4.005 5 N -0.812 5.812 6 C 0.135 3.865 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.139 4.139 10 N -0.534 5.534 11 Si 0.722 3.278 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.210 1.210 15 S 2.773 3.227 16 O -0.932 6.932 17 O -0.971 6.971 18 C -0.786 4.786 19 C -0.011 4.011 20 C -0.249 4.249 21 C 0.122 3.878 22 O -0.224 6.224 23 C -0.070 4.070 24 C -0.138 4.138 25 C -0.162 4.162 26 C 0.003 3.997 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.062 13.654 -4.901 19.521 hybrid contribution -0.345 0.052 0.331 0.481 sum -13.407 13.706 -4.570 19.711 Atomic orbital electron populations 1.22690 0.82519 1.02465 0.98895 1.88140 1.18255 1.26758 1.95069 1.23207 0.95813 0.85490 0.99426 1.21319 0.90686 0.99361 0.89146 1.57356 1.81695 1.18986 1.23169 1.19195 0.98279 0.71068 0.97976 1.21550 1.02590 0.92113 1.40179 0.92210 1.24894 0.96832 0.96780 0.95431 1.69945 1.34419 1.02978 1.46032 0.86511 0.83826 0.78904 0.78590 1.19697 1.21113 1.20950 1.02222 0.74148 0.72859 0.73513 1.93600 1.61795 1.68737 1.69030 1.93477 1.80995 1.44146 1.78483 1.31373 1.25801 1.05639 1.15768 1.20628 0.91067 0.93333 0.96061 1.21241 1.01443 1.02383 0.99812 1.19046 0.85824 0.93333 0.89561 1.86086 1.35928 1.45282 1.55061 1.23109 0.95367 0.86600 1.01955 1.19374 0.96360 0.96485 1.01566 1.20631 1.02110 0.97930 0.95539 1.20783 0.92911 0.96243 0.89740 0.94814 0.94887 0.89839 0.93027 0.94067 0.88346 0.88743 0.92591 0.94841 0.92938 0.84408 0.84959 0.92440 0.88101 0.92448 0.91294 0.90872 0.91222 0.83283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.36 -6.32 9.02 -35.23 -0.32 -6.64 16 3 C 0.04 0.59 6.28 37.16 0.23 0.82 16 4 C 0.12 2.10 6.13 -4.05 -0.02 2.07 16 5 N -0.97 -20.28 2.75 -115.67 -0.32 -20.59 16 6 C 0.26 6.47 4.94 -5.19 -0.03 6.44 16 7 C -0.52 -14.76 9.38 -34.44 -0.32 -15.08 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 11 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 S 2.68 54.15 5.65 -107.50 -0.61 53.55 16 16 O -0.94 -22.46 16.25 -57.17 -0.93 -23.38 16 17 O -0.98 -19.81 15.83 -57.17 -0.91 -20.72 16 18 C -0.70 -11.90 5.97 -39.56 -0.24 -12.13 16 19 C 0.01 0.12 8.36 -39.61 -0.33 -0.21 16 20 C -0.23 -2.83 9.04 -39.43 -0.36 -3.19 16 21 C 0.17 2.23 6.66 -39.22 -0.26 1.97 16 22 O -0.31 -3.51 9.54 -19.41 -0.19 -3.69 16 23 C 0.02 0.17 9.81 101.05 0.99 1.16 16 24 C -0.14 -1.98 5.89 -104.47 -0.62 -2.60 16 25 C -0.11 -1.28 9.79 36.01 0.35 -0.93 16 26 C 0.02 0.37 9.17 -39.60 -0.36 0.01 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.57 6.95 -51.93 -0.36 0.21 16 32 H 0.10 1.76 8.11 -51.93 -0.42 1.34 16 33 H 0.09 1.43 6.92 -51.93 -0.36 1.07 16 34 H 0.06 1.48 6.60 -51.93 -0.34 1.13 16 35 H 0.03 0.90 7.61 -51.93 -0.40 0.50 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.14 1.72 7.61 -52.49 -0.40 1.32 16 38 H 0.13 1.20 6.30 -52.49 -0.33 0.87 16 39 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 44 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 45 H 0.15 2.53 7.61 -52.48 -0.40 2.13 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -34.91 384.71 -8.39 -43.30 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.70 Total: -0.60 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 0.06 Total: -18.45 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.42 Total: -46.16 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -2.34 Total: -54.43 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 54.15 SS G_CDS: -0.61 Total: 53.55 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.91 -8.39 -43.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069416809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.274 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds