Wall clock time and date at job start Tue Mar 31 2020 07:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37708 * 120.16035 * 2 1 4 4 C 1.38841 * 120.82366 * 179.70196 * 3 2 1 5 5 C 1.37803 * 120.56462 * 0.25986 * 4 3 2 6 6 C 1.39298 * 119.51952 * 0.02562 * 5 4 3 7 7 C 1.39603 * 120.15727 * 180.25481 * 2 1 3 8 8 N 1.35662 * 121.65825 * 359.97438 * 7 2 1 9 9 C 1.29835 * 121.61999 * 180.31908 * 8 7 2 10 10 N 1.35856 * 123.37264 * 359.97438 * 9 8 7 11 11 C 1.46496 * 119.69617 * 180.02562 * 10 9 8 12 12 C 1.50709 * 109.47057 * 90.00032 * 11 10 9 13 13 O 1.21280 * 119.99733 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00121 * 179.97438 * 12 11 10 15 15 C 1.46493 * 119.99734 * 180.02562 * 14 12 11 16 16 C 1.50705 * 109.47646 * 90.00067 * 15 14 12 17 17 H 1.08000 * 119.99198 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00099 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00194 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99672 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47074 * 89.99904 * 20 18 16 22 22 H 1.48498 * 109.46893 * 209.99760 * 20 18 16 23 23 H 1.48501 * 109.46818 * 329.99841 * 20 18 16 24 24 C 1.46501 * 119.99832 * 0.02562 * 14 12 11 25 25 C 1.53002 * 109.46913 * 120.00226 * 24 14 12 26 26 C 1.52999 * 109.47077 * 239.99785 * 24 14 12 27 27 C 1.35343 * 120.60722 * 0.02562 * 10 9 8 28 28 O 1.21725 * 121.29614 * 180.02562 * 27 10 9 29 29 H 1.09002 * 109.47401 * 89.99108 * 1 2 3 30 30 H 1.08996 * 109.47563 * 209.99438 * 1 2 3 31 31 H 1.09003 * 109.46922 * 330.00075 * 1 2 3 32 32 H 1.08002 * 119.59081 * 359.97438 * 3 2 1 33 33 H 1.08005 * 119.71906 * 180.27842 * 4 3 2 34 34 H 1.08006 * 120.24436 * 179.97438 * 5 4 3 35 35 H 1.08000 * 118.31391 * 180.02562 * 9 8 7 36 36 H 1.08994 * 109.47266 * 209.99672 * 11 10 9 37 37 H 1.09004 * 109.47442 * 330.00393 * 11 10 9 38 38 H 1.09007 * 109.47247 * 209.99930 * 15 14 12 39 39 H 1.09005 * 109.47537 * 330.00086 * 15 14 12 40 40 H 0.97004 * 119.99693 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.46993 * 359.97438 * 24 14 12 42 42 H 1.09000 * 109.46820 * 59.99548 * 25 24 14 43 43 H 1.08991 * 109.46684 * 179.97438 * 25 24 14 44 44 H 1.08998 * 109.46587 * 299.99559 * 25 24 14 45 45 H 1.09001 * 109.46925 * 60.00016 * 26 24 14 46 46 H 1.08991 * 109.47379 * 179.97438 * 26 24 14 47 47 H 1.09000 * 109.47287 * 300.00838 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1988 1.1907 0.0000 4 6 3.5871 1.2067 0.0062 5 6 4.3016 0.0284 0.0071 6 6 3.6209 -1.1870 0.0012 7 6 2.2083 -1.2071 -0.0054 8 7 1.5675 -2.4028 -0.0102 9 6 2.2205 -3.5250 -0.0090 10 7 3.5770 -3.6003 -0.0035 11 6 4.2311 -4.9112 -0.0032 12 6 4.4613 -5.3581 -1.4239 13 8 4.1136 -4.6509 -2.3459 14 7 5.0544 -6.5430 -1.6699 15 6 5.2786 -6.9771 -3.0510 16 6 6.6266 -6.4912 -3.5178 17 1 7.2534 -5.9162 -2.8523 18 6 7.0597 -6.7808 -4.7944 19 7 6.2966 -7.4815 -5.6045 20 14 8.7309 -6.1791 -5.3727 21 1 9.7610 -7.2015 -5.0585 22 1 8.6936 -5.9483 -6.8391 23 1 9.0666 -4.9091 -4.6800 24 6 5.4748 -7.3969 -0.5562 25 6 4.7506 -8.7419 -0.6431 26 6 6.9858 -7.6256 -0.6310 27 6 4.3296 -2.4755 0.0017 28 8 5.5457 -2.5283 0.0062 29 1 -0.3634 0.0002 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 1.6548 2.1236 -0.0004 33 1 4.1116 2.1509 0.0107 34 1 5.3815 0.0469 0.0115 35 1 1.6564 -4.4459 -0.0134 36 1 5.1875 -4.8398 0.5147 37 1 3.5948 -5.6346 0.5067 38 1 5.2482 -8.0657 -3.0992 39 1 4.5010 -6.5631 -3.6929 40 1 6.6012 -7.6849 -6.5027 41 1 5.2275 -6.9110 0.3876 42 1 4.9983 -9.2275 -1.5870 43 1 5.0637 -9.3772 0.1852 44 1 3.6742 -8.5789 -0.5898 45 1 7.5017 -6.6674 -0.5692 46 1 7.2987 -8.2605 0.1978 47 1 7.2335 -8.1112 -1.5749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069417091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:37 Heat of formation + Delta-G solvation = -18.115544 kcal Electronic energy + Delta-G solvation = -30355.120910 eV Core-core repulsion = 26310.111538 eV Total energy + Delta-G solvation = -4045.009372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.67176 -39.50553 -38.48045 -37.41434 -36.09515 -34.27591 -33.02166 -32.82028 -30.97491 -30.30077 -29.17596 -27.11471 -26.92171 -26.65453 -24.58760 -24.10654 -22.69201 -21.45996 -21.08352 -19.05611 -18.61813 -18.35435 -17.36802 -16.91015 -16.49011 -15.60733 -15.49511 -15.23716 -15.15998 -14.80107 -14.63047 -14.14506 -13.99633 -13.85871 -13.59045 -13.53424 -13.31633 -12.97786 -12.73544 -12.45912 -12.39477 -12.07492 -12.02201 -11.82829 -11.76208 -11.74395 -11.64284 -11.25203 -10.98797 -10.91752 -10.62602 -10.46870 -10.30383 -10.17265 -10.06681 -9.97856 -9.58575 -9.05865 -9.04489 -8.43880 -7.99856 -7.78806 -6.05835 -4.08871 0.49805 0.75588 2.19323 2.32663 2.76193 3.14389 3.29760 3.37132 3.43417 3.71692 3.94530 3.98812 4.19366 4.44351 4.56624 4.64302 4.75065 4.78804 4.88545 5.05403 5.11479 5.14734 5.21647 5.29112 5.34557 5.44929 5.46946 5.53779 5.60216 5.65247 5.90976 5.97300 6.00029 6.06390 6.12531 6.17439 6.26664 6.30654 6.31087 6.51211 6.56237 6.72126 6.90982 6.99592 7.38020 7.45768 7.72753 7.82649 7.90802 8.21187 8.26799 8.79728 8.97612 9.55462 11.02394 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.013139 B = 0.003187 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.554614 B = 8782.613702 C = 9664.850787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.082 4.082 3 C -0.081 4.081 4 C -0.139 4.139 5 C -0.046 4.046 6 C -0.187 4.187 7 C 0.155 3.845 8 N -0.527 5.527 9 C 0.391 3.609 10 N -0.527 5.527 11 C 0.071 3.929 12 C 0.491 3.509 13 O -0.529 6.529 14 N -0.586 5.586 15 C 0.248 3.752 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.131 3.869 25 C -0.162 4.162 26 C -0.159 4.159 27 C 0.552 3.448 28 O -0.503 6.503 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.198 0.802 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.037 0.963 39 H 0.041 0.959 40 H 0.263 0.737 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.060 7.913 17.111 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.083 4.083 3 C -0.100 4.100 4 C -0.158 4.158 5 C -0.066 4.066 6 C -0.193 4.193 7 C 0.046 3.954 8 N -0.248 5.248 9 C 0.104 3.896 10 N -0.249 5.249 11 C -0.055 4.055 12 C 0.275 3.725 13 O -0.405 6.405 14 N -0.318 5.318 15 C 0.129 3.871 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.535 5.535 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C 0.027 3.973 25 C -0.220 4.220 26 C -0.217 4.217 27 C 0.345 3.655 28 O -0.376 6.376 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.215 0.785 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.284 8.382 16.412 21.104 hybrid contribution 1.965 0.135 -0.583 2.054 sum -8.319 8.518 15.830 19.807 Atomic orbital electron populations 1.20623 0.89877 1.02847 1.02559 1.19608 0.96738 0.90442 1.01512 1.21148 0.94189 0.97421 0.97279 1.21115 0.94036 0.97982 1.02636 1.21007 1.00634 0.90462 0.94471 1.20543 0.93919 0.93840 1.10959 1.18617 0.88999 0.91989 0.95776 1.68599 1.35551 0.96363 1.24253 1.24688 0.80153 0.98491 0.86300 1.46207 1.07691 1.08423 1.62531 1.21980 1.01730 0.83143 0.98638 1.20308 0.79785 0.82474 0.89894 1.90736 1.51477 1.52876 1.45436 1.48339 1.56765 1.17287 1.09422 1.19281 0.97364 0.95446 0.75012 1.21430 1.01927 1.34163 0.98431 0.92315 1.24907 0.97591 0.95166 0.96390 1.69923 1.36933 1.39068 1.07528 0.86550 0.84001 0.79281 0.77985 1.20609 1.21125 1.19875 1.21058 0.95723 0.91548 0.89011 1.22163 0.99968 0.96837 1.03025 1.22149 0.94373 1.02133 1.03017 1.18368 0.87136 0.83694 0.76294 1.90879 1.12290 1.86360 1.48089 0.91158 0.90335 0.91927 0.85146 0.85117 0.84593 0.78536 0.85902 0.86325 0.94478 0.94055 0.92770 0.91020 0.91112 0.92046 0.92806 0.92563 0.93048 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 9.81 36.00 0.35 -0.60 16 2 C -0.08 -0.97 5.91 -104.31 -0.62 -1.59 16 3 C -0.08 -0.82 9.66 -39.55 -0.38 -1.21 16 4 C -0.14 -1.50 10.02 -39.52 -0.40 -1.89 16 5 C -0.05 -0.64 9.68 -39.35 -0.38 -1.02 16 6 C -0.19 -2.96 5.89 -104.78 -0.62 -3.57 16 7 C 0.16 2.25 6.60 -84.51 -0.56 1.69 16 8 N -0.53 -7.22 9.48 -12.01 -0.11 -7.33 16 9 C 0.39 4.91 11.40 -90.18 -1.03 3.88 16 10 N -0.53 -7.91 2.09 -120.15 -0.25 -8.16 16 11 C 0.07 0.99 4.16 -5.19 -0.02 0.97 16 12 C 0.49 9.73 7.74 -10.98 -0.08 9.65 16 13 O -0.53 -13.18 16.01 5.56 0.09 -13.09 16 14 N -0.59 -11.59 2.39 -167.46 -0.40 -11.99 16 15 C 0.25 6.19 4.59 -5.20 -0.02 6.17 16 16 C -0.52 -14.47 7.83 -34.44 -0.27 -14.74 16 17 H 0.06 1.67 7.63 -52.49 -0.40 1.27 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 20 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 24 C 0.13 1.94 3.17 -67.93 -0.22 1.72 16 25 C -0.16 -2.08 9.17 37.16 0.34 -1.74 16 26 C -0.16 -2.51 8.47 37.16 0.31 -2.19 16 27 C 0.55 9.77 7.66 -12.43 -0.10 9.67 16 28 O -0.50 -10.31 16.32 5.17 0.08 -10.22 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.77 7.58 -51.93 -0.39 0.37 16 31 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.14 1.82 7.83 -52.48 -0.41 1.41 16 35 H 0.20 1.60 7.99 -52.49 -0.42 1.18 16 36 H 0.12 1.69 7.10 -51.93 -0.37 1.32 16 37 H 0.12 1.02 7.64 -51.93 -0.40 0.62 16 38 H 0.04 0.93 6.43 -51.93 -0.33 0.59 16 39 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.07 0.81 5.76 -51.93 -0.30 0.51 16 42 H 0.07 1.08 6.66 -51.93 -0.35 0.73 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.08 1.56 6.92 -51.93 -0.36 1.20 16 LS Contribution 389.84 15.07 5.87 5.87 Total: -1.00 -37.03 389.84 -9.41 -46.43 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.63 Total: 0.10 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -3.78 Total: 6.86 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.03 Total: -53.08 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.17 Total: -23.31 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.03 -9.41 -46.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069417091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.318 kcal (2) G-P(sol) polarization free energy of solvation -37.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds