Wall clock time and date at job start Tue Mar 31 2020 05:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35915 * 116.99609 * 2 1 4 4 C 1.38853 * 119.98448 * 359.73028 * 3 2 1 5 5 C 1.38253 * 120.23707 * 179.72580 * 4 3 2 6 6 C 1.37998 * 120.20856 * 0.54136 * 5 4 3 7 7 C 1.39582 * 119.96508 * 359.73179 * 6 5 4 8 8 C 1.47820 * 120.11656 * 179.97438 * 7 6 5 9 9 O 1.21568 * 119.99546 * 180.02562 * 8 7 6 10 10 N 1.34776 * 120.00286 * 0.02562 * 8 7 6 11 11 C 1.39489 * 119.99940 * 180.02562 * 10 8 7 12 12 N 1.32297 * 119.72989 * 359.97438 * 11 10 8 13 13 C 1.31955 * 121.68732 * 179.97438 * 12 11 10 14 14 C 1.38082 * 120.95633 * 0.02562 * 13 12 11 15 15 C 1.38782 * 119.36152 * 359.97438 * 14 13 12 16 16 C 1.38791 * 118.44588 * 359.74956 * 15 14 13 17 17 O 1.35979 * 120.49596 * 180.23997 * 16 15 14 18 18 C 1.42906 * 116.99908 * 0.25753 * 17 16 15 19 19 C 1.53003 * 109.46793 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.46838 * 179.97438 * 19 18 17 21 21 H 1.08005 * 120.00125 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00118 * 180.02562 * 20 19 18 23 23 N 1.31512 * 119.99621 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00078 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47177 * 89.99675 * 24 22 20 26 26 H 1.48501 * 109.46768 * 209.99826 * 24 22 20 27 27 H 1.48504 * 109.46967 * 329.99612 * 24 22 20 28 28 C 1.38450 * 119.97785 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47352 * 299.99773 * 1 2 3 30 30 H 1.08999 * 109.47144 * 59.99798 * 1 2 3 31 31 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.88268 * 359.97438 * 4 3 2 33 33 H 1.07997 * 119.89292 * 180.27548 * 5 4 3 34 34 H 1.08007 * 120.01700 * 179.70519 * 6 5 4 35 35 H 0.96993 * 120.00165 * 0.02562 * 10 8 7 36 36 H 1.08005 * 119.51690 * 179.97438 * 13 12 11 37 37 H 1.08002 * 120.31536 * 180.02562 * 14 13 12 38 38 H 1.08004 * 120.77383 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.46559 * 299.99515 * 18 17 16 40 40 H 1.08995 * 109.46971 * 59.99726 * 18 17 16 41 41 H 1.08997 * 109.47411 * 300.00088 * 19 18 17 42 42 H 1.09006 * 109.46804 * 60.00147 * 19 18 17 43 43 H 0.96999 * 119.99963 * 179.97438 * 23 22 20 44 44 H 1.08001 * 120.10521 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2893 2.3753 -0.0057 5 6 1.9114 3.6099 0.0000 6 6 3.2889 3.6934 0.0001 7 6 4.0579 2.5285 0.0001 8 6 5.5336 2.6140 -0.0004 9 8 6.2013 1.5981 -0.0009 10 7 6.1390 3.8182 -0.0003 11 6 7.5315 3.8988 -0.0013 12 7 8.2529 2.7898 -0.0018 13 6 9.5720 2.8210 -0.0033 14 6 10.2541 4.0215 -0.0038 15 6 9.5386 5.2107 -0.0033 16 6 8.1521 5.1480 -0.0076 17 8 7.4098 6.2873 -0.0122 18 6 8.1225 7.5259 -0.0181 19 6 7.1265 8.6873 -0.0233 20 6 7.8780 9.9935 -0.0288 21 1 8.9581 9.9952 -0.0290 22 6 7.1869 11.1866 -0.0336 23 7 5.8717 11.1846 -0.0328 24 14 8.1185 12.8057 -0.0411 25 1 8.3646 13.2286 -1.4432 26 1 7.3147 13.8424 0.6549 27 1 9.4167 12.6330 0.6590 28 6 3.4286 1.2831 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2110 2.3162 -0.0105 33 1 1.3175 4.5119 0.0001 34 1 3.7717 4.6596 -0.0003 35 1 5.6063 4.6288 0.0004 36 1 10.1262 1.8939 -0.0033 37 1 11.3341 4.0350 -0.0054 38 1 10.0488 6.1626 -0.0033 39 1 8.7495 7.5884 0.8714 40 1 8.7486 7.5806 -0.9086 41 1 6.4997 8.6245 -0.9128 42 1 6.5000 8.6327 0.8671 43 1 5.3855 12.0239 -0.0357 44 1 4.0182 0.3782 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069453644.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:50 Heat of formation + Delta-G solvation = -36.342875 kcal Electronic energy + Delta-G solvation = -28125.758460 eV Core-core repulsion = 24009.551508 eV Total energy + Delta-G solvation = -4116.206952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.04157 -40.36910 -39.22150 -37.83785 -37.21337 -34.91119 -33.48935 -31.84699 -31.41715 -30.92019 -30.25082 -28.93151 -27.63582 -25.46778 -24.69006 -23.12772 -22.74430 -22.51482 -21.04223 -20.30869 -19.00707 -18.13392 -17.48802 -16.90226 -16.49122 -16.18679 -16.08184 -16.00494 -15.80472 -15.65711 -14.98597 -14.94226 -14.59160 -14.33069 -13.98478 -13.88325 -13.76492 -13.57685 -12.87114 -12.82159 -12.53235 -12.41848 -12.11658 -12.01585 -11.94241 -11.43440 -11.25455 -11.07926 -11.00459 -10.74266 -10.69423 -10.32316 -10.06205 -9.79199 -9.42849 -9.31014 -9.20799 -9.07411 -8.54924 -8.53477 -7.67470 -6.19344 -4.24133 0.53855 1.14935 1.28066 1.44467 2.67417 2.79445 3.07931 3.21724 3.27882 3.30053 3.51359 3.63579 4.03938 4.29426 4.32854 4.47226 4.64610 4.72785 4.78196 4.79253 4.91856 4.94636 5.03254 5.11526 5.13924 5.17709 5.20728 5.32592 5.46133 5.66872 5.84794 5.88971 5.93455 6.04532 6.06902 6.11166 6.17304 6.29114 6.35809 6.52676 6.62326 7.04866 7.22935 7.32986 7.51163 7.62387 7.83599 8.03446 8.13059 8.31658 8.81001 9.40849 10.92103 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.009999 B = 0.002563 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.616927 B =10923.505918 C =13697.359537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.117 3.883 4 C -0.184 4.184 5 C -0.083 4.083 6 C -0.121 4.121 7 C -0.093 4.093 8 C 0.551 3.449 9 O -0.473 6.473 10 N -0.646 5.646 11 C 0.328 3.672 12 N -0.443 5.443 13 C 0.076 3.924 14 C -0.159 4.159 15 C -0.147 4.147 16 C 0.069 3.931 17 O -0.316 6.316 18 C 0.066 3.934 19 C 0.027 3.973 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.273 1.273 28 C -0.091 4.091 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.424 0.576 36 H 0.157 0.843 37 H 0.135 0.865 38 H 0.146 0.854 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.264 0.736 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.581 -18.550 0.086 19.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.072 3.928 4 C -0.203 4.203 5 C -0.101 4.101 6 C -0.140 4.140 7 C -0.096 4.096 8 C 0.337 3.663 9 O -0.343 6.343 10 N -0.294 5.294 11 C 0.096 3.904 12 N -0.158 5.158 13 C -0.081 4.081 14 C -0.180 4.180 15 C -0.174 4.174 16 C 0.017 3.983 17 O -0.229 6.229 18 C -0.008 4.008 19 C -0.011 4.011 20 C -0.566 4.566 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.111 4.111 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.263 0.737 36 H 0.175 0.825 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.074 0.926 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.898 -20.144 0.090 21.293 hybrid contribution 0.567 2.546 -0.016 2.608 sum -6.331 -17.599 0.073 18.703 Atomic orbital electron populations 1.23085 0.78223 1.04112 1.01434 1.86100 1.21462 1.26532 1.88811 1.18832 0.91962 0.84449 0.97558 1.21460 1.00351 0.92325 1.06195 1.20936 0.94290 0.97401 0.97512 1.21364 0.94292 0.97748 1.00582 1.19635 0.92384 0.93691 1.03884 1.18289 0.87269 0.83332 0.77398 1.90869 1.65220 1.33919 1.44331 1.43301 1.03934 1.10244 1.71922 1.17746 0.84581 0.87039 1.01070 1.67627 1.07872 1.26933 1.13396 1.22422 0.88763 0.97921 0.99004 1.21903 1.01223 0.92520 1.02350 1.21612 0.92174 1.00405 1.03215 1.19579 0.91154 0.87048 1.00513 1.86095 1.36270 1.12948 1.87583 1.23406 0.97307 0.80220 0.99883 1.19129 0.94118 0.88925 0.98887 1.20947 0.93073 0.90120 1.52487 0.92331 1.24978 0.94917 0.99413 0.94794 1.69959 1.06049 1.27131 1.49539 0.86485 0.79751 0.82881 0.78275 1.20459 1.21013 1.19741 1.20418 0.91331 0.98127 1.01203 0.92522 0.92531 0.88110 0.84986 0.84657 0.84850 0.73686 0.82536 0.84730 0.83671 0.92893 0.92902 0.95338 0.95329 0.92642 0.83715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.18 10.49 -19.47 -0.20 -3.38 16 3 C 0.12 1.27 6.68 -39.28 -0.26 1.01 16 4 C -0.18 -1.67 9.03 -39.35 -0.36 -2.03 16 5 C -0.08 -0.78 10.03 -39.66 -0.40 -1.18 16 6 C -0.12 -1.33 9.54 -39.17 -0.37 -1.70 16 7 C -0.09 -1.20 5.87 -104.99 -0.62 -1.82 16 8 C 0.55 8.58 7.74 -12.34 -0.10 8.48 16 9 O -0.47 -8.70 14.60 5.31 0.08 -8.63 16 10 N -0.65 -9.90 5.34 -12.16 -0.06 -9.96 16 11 C 0.33 5.55 7.44 -154.50 -1.15 4.40 16 12 N -0.44 -7.54 7.87 -12.24 -0.10 -7.63 16 13 C 0.08 1.03 11.17 -17.56 -0.20 0.84 16 14 C -0.16 -1.97 10.10 -39.44 -0.40 -2.37 16 15 C -0.15 -2.14 9.14 -39.18 -0.36 -2.49 16 16 C 0.07 1.14 6.72 -38.91 -0.26 0.88 16 17 O -0.32 -5.77 9.38 -19.67 -0.18 -5.96 16 18 C 0.07 1.28 4.70 37.16 0.17 1.46 16 19 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 20 C -0.53 -13.98 9.11 -34.44 -0.31 -14.29 16 21 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 24 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 28 C -0.09 -1.14 9.53 -39.02 -0.37 -1.52 16 29 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 30 H 0.06 0.26 7.64 -51.93 -0.40 -0.13 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.13 0.84 6.28 -52.49 -0.33 0.51 16 33 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.13 1.32 6.40 -52.48 -0.34 0.98 16 35 H 0.42 5.77 6.07 -40.82 -0.25 5.52 16 36 H 0.16 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.15 1.94 6.44 -52.48 -0.34 1.60 16 39 H 0.05 0.98 7.69 -51.93 -0.40 0.58 16 40 H 0.05 0.98 7.71 -51.93 -0.40 0.58 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.15 1.87 7.65 -52.49 -0.40 1.47 16 LS Contribution 377.45 15.07 5.69 5.69 Total: -1.00 -33.09 377.45 -8.63 -41.72 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.33 Total: 4.34 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -4.23 Total: -7.12 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.58 Total: -42.17 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.31 Total: -17.97 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.09 -8.63 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069453644.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.376 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds