Wall clock time and date at job start Tue Mar 31 2020 05:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00159 * 2 1 4 4 H 1.48501 * 109.46938 * 270.00471 * 3 2 1 5 5 H 1.48506 * 109.47103 * 29.99859 * 3 2 1 6 6 H 1.48492 * 109.47271 * 149.99946 * 3 2 1 7 7 C 1.37882 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99791 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00087 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.46878 * 179.97438 * 9 7 2 11 11 C 1.46847 * 111.00076 * 294.21231 * 10 9 7 12 12 C 1.53035 * 109.52159 * 174.16265 * 11 10 9 13 13 C 1.53114 * 109.28064 * 59.17886 * 12 11 10 14 14 C 1.53121 * 109.16038 * 302.34819 * 13 12 11 15 15 H 1.09001 * 109.53315 * 297.69199 * 14 13 12 16 16 N 1.46499 * 109.50541 * 177.59513 * 14 13 12 17 17 S 1.65600 * 120.00188 * 95.19463 * 16 14 13 18 18 O 1.42099 * 106.40049 * 311.46141 * 17 16 14 19 19 O 1.42103 * 106.40238 * 178.54517 * 17 16 14 20 20 C 1.76195 * 107.22059 * 65.00225 * 17 16 14 21 21 C 1.38269 * 119.98803 * 270.23601 * 20 17 16 22 22 C 1.38223 * 120.05333 * 180.27225 * 21 20 17 23 23 C 1.38220 * 120.02561 * 359.76978 * 22 21 20 24 24 C 1.38447 * 119.97159 * 359.97438 * 23 22 21 25 25 F 1.35096 * 120.02523 * 179.97438 * 24 23 22 26 26 C 1.38172 * 119.98753 * 89.99549 * 20 17 16 27 27 C 1.46841 * 110.99635 * 170.00427 * 10 9 7 28 28 H 0.96993 * 119.99814 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47052 * 60.00284 * 9 7 2 30 30 H 1.08994 * 109.47283 * 300.00060 * 9 7 2 31 31 H 1.08996 * 109.46208 * 294.17905 * 11 10 9 32 32 H 1.09000 * 109.46131 * 54.14557 * 11 10 9 33 33 H 1.09000 * 109.50519 * 179.12003 * 12 11 10 34 34 H 1.09002 * 109.50312 * 299.19787 * 12 11 10 35 35 H 1.09001 * 109.52867 * 182.44365 * 13 12 11 36 36 H 1.09001 * 109.52576 * 62.25028 * 13 12 11 37 37 H 0.97002 * 120.00217 * 275.19768 * 16 14 13 38 38 H 1.08005 * 119.97358 * 0.02562 * 21 20 17 39 39 H 1.07994 * 119.98872 * 179.74471 * 22 21 20 40 40 H 1.07998 * 120.01498 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.01574 * 359.97438 * 26 20 17 42 42 H 1.08999 * 109.46557 * 65.82521 * 27 10 9 43 43 H 1.09004 * 109.45784 * 305.84924 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0018 11 6 2.9741 -3.6498 -1.2527 12 6 4.0540 -4.7302 -1.1603 13 6 3.3911 -6.0875 -0.9095 14 6 2.5582 -6.0106 0.3730 15 1 3.2114 -5.7994 1.2197 16 7 1.8745 -7.2881 0.5895 17 16 2.5525 -8.4336 1.5747 18 8 3.9078 -8.5617 1.1674 19 8 1.6436 -9.5256 1.6050 20 6 2.5838 -7.7668 3.2053 21 6 3.6789 -7.0393 3.6335 22 6 3.7073 -6.5204 4.9144 23 6 2.6387 -6.7242 5.7670 24 6 1.5394 -7.4479 5.3375 25 9 0.4945 -7.6482 6.1702 26 6 1.5119 -7.9669 4.0539 27 6 1.5216 -4.8931 0.2361 28 1 -0.4849 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8896 31 1 2.3054 -3.8748 -2.0836 32 1 3.4437 -2.6800 -1.4170 33 1 4.6140 -4.7659 -2.0947 34 1 4.7316 -4.4981 -0.3386 35 1 4.1590 -6.8533 -0.7997 36 1 2.7436 -6.3375 -1.7499 37 1 1.0247 -7.4630 0.1558 38 1 4.5144 -6.8798 2.9681 39 1 4.5649 -5.9559 5.2491 40 1 2.6612 -6.3190 6.7679 41 1 0.6547 -8.5315 3.7178 42 1 0.8598 -5.1123 -0.6017 43 1 0.9364 -4.8263 1.1533 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069520344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:55 Heat of formation + Delta-G solvation = -93.142047 kcal Electronic energy + Delta-G solvation = -28092.996737 eV Core-core repulsion = 23986.310435 eV Total energy + Delta-G solvation = -4106.686303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.120 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -49.20250 -39.26306 -38.76855 -37.37553 -36.02868 -35.06443 -32.94760 -31.80014 -31.70630 -30.89359 -28.89052 -26.95265 -23.95339 -23.84540 -23.15997 -22.49467 -21.26710 -20.08045 -19.37633 -18.55485 -17.57379 -16.94587 -16.62882 -16.47317 -16.11840 -15.98492 -15.90117 -15.23587 -14.62361 -14.36219 -14.26552 -14.24117 -13.67491 -13.60861 -13.56165 -13.11229 -12.92207 -12.64714 -12.44203 -12.29670 -12.24212 -12.14399 -12.03883 -11.90815 -11.34043 -11.14556 -11.08833 -10.84170 -10.81544 -10.69704 -10.42234 -10.12277 -9.96624 -9.82386 -9.38515 -9.21131 -9.17548 -8.49492 -7.35296 -6.08426 -4.10005 0.11042 0.41006 0.76938 2.71013 3.05281 3.27825 3.34586 3.38220 3.55139 3.80837 4.13994 4.37022 4.45355 4.49566 4.65438 4.77142 4.86477 4.94458 5.03704 5.14564 5.24121 5.27638 5.42796 5.49371 5.56910 5.58032 5.69239 5.75046 5.80665 5.90501 6.07527 6.13683 6.19038 6.25127 6.38682 6.41036 6.67062 6.70273 6.84070 7.22223 7.26956 7.73061 8.01136 8.11316 8.46198 8.97547 9.54566 11.02482 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.011416 B = 0.003425 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.040659 B = 8172.066901 C = 9572.081095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.533 5.533 11 C 0.060 3.940 12 C -0.116 4.116 13 C -0.135 4.135 14 C 0.156 3.844 15 H 0.091 0.909 16 N -1.108 6.108 17 S 2.699 3.301 18 O -0.949 6.949 19 O -0.961 6.961 20 C -0.651 4.651 21 C -0.028 4.028 22 C -0.107 4.107 23 C -0.098 4.098 24 C 0.079 3.921 25 F -0.135 7.135 26 C -0.053 4.053 27 C 0.052 3.948 28 H 0.261 0.739 29 H -0.008 1.008 30 H 0.030 0.970 31 H 0.021 0.979 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.419 0.581 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.152 0.848 42 H 0.030 0.970 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.052 -16.088 6.501 18.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.070 3.930 10 N -0.259 5.259 11 C -0.068 4.068 12 C -0.155 4.155 13 C -0.175 4.175 14 C 0.049 3.951 15 H 0.109 0.891 16 N -0.868 5.868 17 S 2.786 3.214 18 O -0.939 6.939 19 O -0.951 6.951 20 C -0.737 4.737 21 C -0.047 4.047 22 C -0.126 4.126 23 C -0.117 4.117 24 C 0.059 3.941 25 F -0.113 7.113 26 C -0.073 4.073 27 C -0.079 4.079 28 H 0.071 0.929 29 H 0.010 0.990 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.254 0.746 38 H 0.167 0.833 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.170 0.830 42 H 0.048 0.952 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.647 -16.674 6.787 19.190 hybrid contribution -1.073 1.352 -0.009 1.726 sum 5.574 -15.322 6.778 17.657 Atomic orbital electron populations 1.69955 1.06094 1.26849 1.50897 1.24989 0.94848 0.99339 0.95397 0.86504 0.79805 0.83083 0.78063 1.20722 1.21290 1.19742 1.21139 0.93513 0.89804 1.50193 0.91746 1.19717 0.89989 0.87172 0.96167 1.62007 1.27815 1.01936 1.34104 1.22020 0.94995 0.99334 0.90483 1.21615 0.98347 0.93783 1.01719 1.22100 0.99505 0.98640 0.97231 1.20901 0.93831 0.81425 0.98914 0.89145 1.55557 1.36563 1.31781 1.62921 1.01853 0.73882 0.72610 0.73020 1.93606 1.34837 1.84967 1.80468 1.93594 1.64999 1.49656 1.86828 1.30997 1.01784 1.15920 1.24975 1.21088 0.95856 0.91245 0.96544 1.21222 0.98590 0.99370 0.93373 1.21523 0.92411 0.96408 1.01327 1.17709 0.86103 1.01283 0.89038 1.91535 1.55626 1.93469 1.70702 1.20849 0.97933 0.96606 0.91921 1.22234 0.94484 0.90243 1.00929 0.92890 0.99047 0.95183 0.96078 0.89532 0.91737 0.91141 0.90790 0.91798 0.74625 0.83282 0.83689 0.83834 0.83038 0.95177 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.97 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.51 -13.60 8.43 -34.44 -0.29 -13.89 16 8 H 0.06 1.70 7.12 -52.48 -0.37 1.32 16 9 C 0.19 4.80 4.72 -4.97 -0.02 4.77 16 10 N -0.53 -10.49 4.65 -236.12 -1.10 -11.59 16 11 C 0.06 1.06 5.29 -3.83 -0.02 1.04 16 12 C -0.12 -1.61 6.09 -26.65 -0.16 -1.78 16 13 C -0.14 -1.73 5.61 -26.61 -0.15 -1.88 16 14 C 0.16 2.02 2.82 -67.85 -0.19 1.83 16 15 H 0.09 1.13 7.22 -51.93 -0.37 0.76 16 16 N -1.11 -11.94 5.48 -4.82 -0.03 -11.97 16 17 S 2.70 30.94 5.65 -107.50 -0.61 30.33 16 18 O -0.95 -12.73 16.62 -57.17 -0.95 -13.68 16 19 O -0.96 -12.94 17.28 -57.17 -0.99 -13.92 16 20 C -0.65 -7.14 5.82 -39.59 -0.23 -7.37 16 21 C -0.03 -0.28 8.89 -39.58 -0.35 -0.63 16 22 C -0.11 -0.94 10.04 -39.59 -0.40 -1.34 16 23 C -0.10 -0.90 10.03 -39.51 -0.40 -1.30 16 24 C 0.08 0.86 7.30 -39.41 -0.29 0.57 16 25 F -0.13 -1.55 17.27 2.25 0.04 -1.51 16 26 C -0.05 -0.59 9.50 -39.52 -0.38 -0.96 16 27 C 0.05 0.82 4.99 -3.84 -0.02 0.80 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 30 H 0.03 0.80 7.99 -51.93 -0.41 0.38 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 1.69 6.70 -51.93 -0.35 1.34 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.91 7.71 -51.93 -0.40 0.51 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.42 3.78 8.84 -34.47 -0.30 3.47 16 38 H 0.15 1.30 7.62 -52.48 -0.40 0.90 16 39 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 41 H 0.15 1.49 7.62 -52.49 -0.40 1.09 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 1.18 8.02 -51.93 -0.42 0.76 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -32.65 368.16 -11.31 -43.96 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.95 Total: 0.82 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -2.99 Total: -18.70 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.39 Total: -48.79 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -1.94 Total: -27.60 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 30.94 SS G_CDS: -0.61 Total: 30.33 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.65 -11.31 -43.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069520344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.180 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds