Wall clock time and date at job start Tue Mar 31 2020 05:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00159 * 2 1 4 4 H 1.48501 * 109.46938 * 270.00471 * 3 2 1 5 5 H 1.48506 * 109.47103 * 29.99859 * 3 2 1 6 6 H 1.48492 * 109.47271 * 149.99946 * 3 2 1 7 7 C 1.37882 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99791 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00087 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.46878 * 179.97438 * 9 7 2 11 11 C 1.46847 * 111.00076 * 294.21231 * 10 9 7 12 12 C 1.53035 * 109.52159 * 174.16265 * 11 10 9 13 13 C 1.53114 * 109.28064 * 59.17886 * 12 11 10 14 14 C 1.53121 * 109.16038 * 302.34819 * 13 12 11 15 15 H 1.09001 * 109.53315 * 297.69199 * 14 13 12 16 16 N 1.46499 * 109.50541 * 177.59513 * 14 13 12 17 17 S 1.65600 * 120.00188 * 95.19463 * 16 14 13 18 18 O 1.42099 * 106.40049 * 311.46141 * 17 16 14 19 19 O 1.42103 * 106.40238 * 178.54517 * 17 16 14 20 20 C 1.76195 * 107.22059 * 65.00225 * 17 16 14 21 21 C 1.38269 * 119.98803 * 270.23601 * 20 17 16 22 22 C 1.38223 * 120.05333 * 180.27225 * 21 20 17 23 23 C 1.38220 * 120.02561 * 359.76978 * 22 21 20 24 24 C 1.38447 * 119.97159 * 359.97438 * 23 22 21 25 25 F 1.35096 * 120.02523 * 179.97438 * 24 23 22 26 26 C 1.38172 * 119.98753 * 89.99549 * 20 17 16 27 27 C 1.46841 * 110.99635 * 170.00427 * 10 9 7 28 28 H 0.96993 * 119.99814 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47052 * 60.00284 * 9 7 2 30 30 H 1.08994 * 109.47283 * 300.00060 * 9 7 2 31 31 H 1.08996 * 109.46208 * 294.17905 * 11 10 9 32 32 H 1.09000 * 109.46131 * 54.14557 * 11 10 9 33 33 H 1.09000 * 109.50519 * 179.12003 * 12 11 10 34 34 H 1.09002 * 109.50312 * 299.19787 * 12 11 10 35 35 H 1.09001 * 109.52867 * 182.44365 * 13 12 11 36 36 H 1.09001 * 109.52576 * 62.25028 * 13 12 11 37 37 H 0.97002 * 120.00217 * 275.19768 * 16 14 13 38 38 H 1.08005 * 119.97358 * 0.02562 * 21 20 17 39 39 H 1.07994 * 119.98872 * 179.74471 * 22 21 20 40 40 H 1.07998 * 120.01498 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.01574 * 359.97438 * 26 20 17 42 42 H 1.08999 * 109.46557 * 65.82521 * 27 10 9 43 43 H 1.09004 * 109.45784 * 305.84924 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0018 11 6 2.9741 -3.6498 -1.2527 12 6 4.0540 -4.7302 -1.1603 13 6 3.3911 -6.0875 -0.9095 14 6 2.5582 -6.0106 0.3730 15 1 3.2114 -5.7994 1.2197 16 7 1.8745 -7.2881 0.5895 17 16 2.5525 -8.4336 1.5747 18 8 3.9078 -8.5617 1.1674 19 8 1.6436 -9.5256 1.6050 20 6 2.5838 -7.7668 3.2053 21 6 3.6789 -7.0393 3.6335 22 6 3.7073 -6.5204 4.9144 23 6 2.6387 -6.7242 5.7670 24 6 1.5394 -7.4479 5.3375 25 9 0.4945 -7.6482 6.1702 26 6 1.5119 -7.9669 4.0539 27 6 1.5216 -4.8931 0.2361 28 1 -0.4849 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8896 31 1 2.3054 -3.8748 -2.0836 32 1 3.4437 -2.6800 -1.4170 33 1 4.6140 -4.7659 -2.0947 34 1 4.7316 -4.4981 -0.3386 35 1 4.1590 -6.8533 -0.7997 36 1 2.7436 -6.3375 -1.7499 37 1 1.0247 -7.4630 0.1558 38 1 4.5144 -6.8798 2.9681 39 1 4.5649 -5.9559 5.2491 40 1 2.6612 -6.3190 6.7679 41 1 0.6547 -8.5315 3.7178 42 1 0.8598 -5.1123 -0.6017 43 1 0.9364 -4.8263 1.1533 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069520344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:50 Heat of formation + Delta-G solvation = -116.418691 kcal Electronic energy + Delta-G solvation = -28094.006088 eV Core-core repulsion = 23986.310435 eV Total energy + Delta-G solvation = -4107.695654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.120 amu Computer time = 4.18 seconds Orbital eigenvalues (eV) -50.04365 -40.12807 -39.95512 -38.38908 -37.03241 -36.42121 -34.70786 -33.20339 -32.54258 -31.65882 -30.19836 -28.73134 -25.54184 -24.70871 -23.97071 -23.69434 -22.89192 -21.09820 -20.48224 -19.44621 -18.64973 -18.37170 -17.79593 -17.38781 -17.29460 -16.86337 -16.75004 -16.60862 -16.10218 -15.70909 -15.65962 -15.04081 -14.96973 -14.83551 -14.53995 -14.40867 -13.97558 -13.76120 -13.69606 -13.42855 -13.29789 -13.26374 -13.23110 -12.94184 -12.86303 -12.64169 -12.55437 -12.33318 -12.17488 -11.99290 -11.81050 -11.64478 -11.42386 -11.05929 -10.61652 -10.59327 -10.41903 -9.96722 -9.00418 -8.18312 -6.27670 -0.77334 -0.40656 -0.00351 1.43984 1.44656 1.56149 1.81117 2.24722 2.42734 2.65755 2.99516 3.14994 3.29151 3.38193 3.64200 3.75899 3.82053 3.88220 3.93009 4.09894 4.19462 4.30530 4.34433 4.42235 4.50848 4.70178 4.75891 4.81039 4.83517 4.88977 4.94946 4.99206 5.08505 5.10578 5.19597 5.23297 5.29701 5.41360 5.53433 5.67026 5.68471 5.98211 6.08385 6.36221 6.65977 6.89123 7.42241 8.92844 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.011416 B = 0.003425 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.040659 B = 8172.066901 C = 9572.081095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.067 0.933 9 C 0.208 3.792 10 N -0.536 5.536 11 C 0.059 3.941 12 C -0.107 4.107 13 C -0.134 4.134 14 C 0.165 3.835 15 H 0.099 0.901 16 N -1.102 6.102 17 S 2.720 3.280 18 O -0.965 6.965 19 O -0.982 6.982 20 C -0.660 4.660 21 C -0.038 4.038 22 C -0.105 4.105 23 C -0.095 4.095 24 C 0.059 3.941 25 F -0.143 7.143 26 C -0.068 4.068 27 C 0.050 3.950 28 H 0.263 0.737 29 H -0.039 1.039 30 H 0.004 0.996 31 H 0.015 0.985 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.427 0.573 38 H 0.163 0.837 39 H 0.177 0.823 40 H 0.169 0.831 41 H 0.154 0.846 42 H 0.030 0.970 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.219 -16.146 6.916 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.082 3.918 10 N -0.261 5.261 11 C -0.069 4.069 12 C -0.145 4.145 13 C -0.174 4.174 14 C 0.058 3.942 15 H 0.117 0.883 16 N -0.862 5.862 17 S 2.809 3.191 18 O -0.955 6.955 19 O -0.972 6.972 20 C -0.747 4.747 21 C -0.057 4.057 22 C -0.124 4.124 23 C -0.114 4.114 24 C 0.039 3.961 25 F -0.121 7.121 26 C -0.088 4.088 27 C -0.080 4.080 28 H 0.072 0.928 29 H -0.021 1.021 30 H 0.022 0.978 31 H 0.033 0.967 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.264 0.736 38 H 0.181 0.819 39 H 0.194 0.806 40 H 0.186 0.814 41 H 0.172 0.828 42 H 0.049 0.951 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.822 -16.769 7.178 20.262 hybrid contribution -1.771 1.341 -0.106 2.223 sum 7.051 -15.428 7.072 18.379 Atomic orbital electron populations 1.70088 1.07786 1.27798 1.52049 1.25889 0.95647 1.03137 0.94947 0.85418 0.78684 0.78400 0.78341 1.19978 1.21142 1.18606 1.21469 0.93763 0.90844 1.49618 0.91482 1.19362 0.90093 0.88931 0.93428 1.61904 1.26775 1.02166 1.35294 1.22059 0.95607 0.99935 0.89317 1.21562 0.97047 0.92696 1.03222 1.22118 0.99845 0.98259 0.97135 1.20729 0.92917 0.80873 0.99723 0.88269 1.55376 1.36955 1.30751 1.63120 1.01075 0.73032 0.72098 0.72884 1.93578 1.35609 1.85303 1.81014 1.93565 1.65568 1.50825 1.87231 1.30835 1.02458 1.16950 1.24423 1.21425 0.95846 0.90894 0.97523 1.21625 0.99291 0.98783 0.92662 1.21884 0.91656 0.95316 1.02552 1.17961 0.86694 1.02300 0.89123 1.91512 1.56110 1.93654 1.70854 1.20976 0.98322 0.97112 0.92350 1.22290 0.95410 0.89642 1.00643 0.92825 1.02111 0.97794 0.96711 0.91653 0.89417 0.90686 0.89365 0.91174 0.73631 0.81916 0.80593 0.81394 0.82790 0.95139 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.26 13.29 21.45 0.28 -54.97 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 42.90 29.54 68.60 2.03 44.93 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.52 -28.14 8.43 25.60 0.22 -27.93 16 8 H 0.07 3.53 7.12 -2.91 -0.02 3.51 16 9 C 0.21 10.62 4.72 85.56 0.40 11.02 16 10 N -0.54 -21.20 4.65 -900.94 -4.19 -25.39 16 11 C 0.06 2.06 5.29 86.33 0.46 2.52 16 12 C -0.11 -2.73 6.09 30.64 0.19 -2.54 16 13 C -0.13 -3.10 5.61 30.67 0.17 -2.93 16 14 C 0.16 3.99 2.82 45.04 0.13 4.12 16 15 H 0.10 2.26 7.22 -2.39 -0.02 2.24 16 16 N -1.10 -22.27 5.48 -169.17 -0.93 -23.20 16 17 S 2.72 59.08 5.65 -56.49 -0.32 58.76 16 18 O -0.97 -24.08 16.62 -128.00 -2.13 -26.21 16 19 O -0.98 -25.80 17.28 -128.00 -2.21 -28.01 16 20 C -0.66 -13.70 5.82 22.26 0.13 -13.57 16 21 C -0.04 -0.68 8.89 22.27 0.20 -0.48 16 22 C -0.11 -1.57 10.04 22.26 0.22 -1.35 16 23 C -0.10 -1.56 10.03 22.32 0.22 -1.34 16 24 C 0.06 1.25 7.30 22.38 0.16 1.41 16 25 F -0.14 -3.24 17.27 44.97 0.78 -2.46 16 26 C -0.07 -1.46 9.50 22.31 0.21 -1.25 16 27 C 0.05 1.59 4.99 86.33 0.43 2.02 16 28 H 0.26 14.66 8.31 -92.71 -0.77 13.88 16 29 H -0.04 -2.17 8.12 -2.38 -0.02 -2.19 16 30 H 0.00 0.22 7.99 -2.39 -0.02 0.20 16 31 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 2.55 6.70 -2.39 -0.02 2.53 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.09 1.88 7.71 -2.39 -0.02 1.86 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.43 7.25 8.84 -96.75 -0.86 6.40 16 38 H 0.16 2.41 7.62 -2.91 -0.02 2.39 16 39 H 0.18 1.48 8.06 -2.91 -0.02 1.45 16 40 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.15 3.07 7.62 -2.91 -0.02 3.05 16 42 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 2.21 8.02 -2.38 -0.02 2.19 16 Total: -1.00 -70.66 368.16 -2.90 -73.57 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.18 Total: 12.72 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 3.61 Total: -29.74 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -4.83 Total: -103.56 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -4.34 Total: -54.22 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.78 Total: -2.46 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 59.08 SS G_CDS: -0.32 Total: 58.76 kcal Total: -70.66 -2.90 -73.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069520344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.853 kcal (2) G-P(sol) polarization free energy of solvation -70.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.18 seconds