Wall clock time and date at job start Tue Mar 31 2020 06:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34773 * 126.36612 * 2 1 4 4 C 1.34426 * 107.69172 * 180.02562 * 3 2 1 5 5 C 1.47830 * 125.72705 * 179.97438 * 4 3 2 6 6 C 1.39566 * 120.14864 * 179.74842 * 5 4 3 7 7 C 1.37955 * 119.85602 * 179.71718 * 6 5 4 8 8 C 1.38360 * 120.14437 * 0.55699 * 7 6 5 9 9 C 1.38357 * 120.28807 * 359.71861 * 8 7 6 10 10 C 1.37956 * 120.14753 * 359.97438 * 9 8 7 11 11 N 1.31218 * 108.55280 * 359.97438 * 4 3 2 12 12 C 1.34164 * 108.64596 * 359.97438 * 11 4 3 13 13 C 1.50692 * 126.08262 * 180.25928 * 12 11 4 14 14 C 1.50693 * 109.47548 * 269.69573 * 13 12 11 15 15 O 1.21285 * 120.00049 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00207 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00121 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.46963 * 89.99674 * 17 16 14 19 19 H 1.07993 * 120.00183 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99611 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00368 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99751 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47045 * 89.99654 * 22 20 18 24 24 H 1.48497 * 109.47338 * 209.99634 * 22 20 18 25 25 H 1.48497 * 109.47172 * 329.99881 * 22 20 18 26 26 C 1.46500 * 120.00224 * 359.97438 * 16 14 13 27 27 C 1.52991 * 109.47372 * 120.00377 * 26 16 14 28 28 C 1.53001 * 109.47234 * 240.00627 * 26 16 14 29 29 H 1.09000 * 109.47296 * 269.97863 * 1 2 3 30 30 H 1.09006 * 109.46906 * 29.97716 * 1 2 3 31 31 H 1.09001 * 109.46947 * 149.97180 * 1 2 3 32 32 H 1.08005 * 120.06779 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.92917 * 180.27249 * 7 6 5 34 34 H 1.07994 * 119.85758 * 179.70023 * 8 7 6 35 35 H 1.08003 * 119.92537 * 180.02562 * 9 8 7 36 36 H 1.07999 * 120.07547 * 180.02562 * 10 9 8 37 37 H 1.09005 * 109.47176 * 29.69967 * 13 12 11 38 38 H 1.09003 * 109.46970 * 149.69450 * 13 12 11 39 39 H 1.08998 * 109.47288 * 209.99454 * 17 16 14 40 40 H 1.09004 * 109.47307 * 329.99866 * 17 16 14 41 41 H 0.97004 * 119.99865 * 180.02562 * 21 20 18 42 42 H 1.09004 * 109.46954 * 0.02562 * 26 16 14 43 43 H 1.09004 * 109.47154 * 60.00034 * 27 26 16 44 44 H 1.09003 * 109.47336 * 180.02562 * 27 26 16 45 45 H 1.09006 * 109.47123 * 300.00429 * 27 26 16 46 46 H 1.09005 * 109.47093 * 59.99344 * 28 26 16 47 47 H 1.08990 * 109.47271 * 179.97438 * 28 26 16 48 48 H 1.09004 * 109.46873 * 299.99711 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0853 0.0000 4 6 3.5796 0.6548 -0.0006 5 6 4.7817 1.5154 -0.0013 6 6 6.0541 0.9421 0.0034 7 6 7.1718 1.7508 -0.0032 8 6 7.0333 3.1274 -0.0029 9 6 5.7747 3.7021 -0.0018 10 6 4.6489 2.9048 -0.0016 11 7 3.5768 -0.6573 -0.0004 12 6 2.3047 -1.0836 0.0009 13 6 1.8501 -2.5203 0.0071 14 6 1.6920 -3.0033 -1.4115 15 8 1.9251 -2.2545 -2.3367 16 7 1.2907 -4.2672 -1.6523 17 6 1.1365 -4.7366 -3.0315 18 6 2.4382 -5.3266 -3.5098 19 1 3.2947 -5.3493 -2.8524 20 6 2.5358 -5.8366 -4.7871 21 7 1.4929 -5.8086 -5.5879 22 14 4.1494 -6.5673 -5.3803 23 1 4.1811 -8.0182 -5.0657 24 1 4.2694 -6.3763 -6.8480 25 1 5.2805 -5.8882 -4.6986 26 6 1.0086 -5.1717 -0.5349 27 6 -0.4482 -5.6332 -0.6076 28 6 1.9335 -6.3877 -0.6170 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5143 32 1 6.1636 -0.1324 0.0081 33 1 8.1570 1.3084 -0.0040 34 1 7.9113 3.7561 -0.0032 35 1 5.6734 4.7774 -0.0020 36 1 3.6671 3.3546 -0.0012 37 1 2.5914 -3.1338 0.5194 38 1 0.8943 -2.5967 0.5255 39 1 0.3565 -5.4970 -3.0715 40 1 0.8603 -3.8988 -3.6718 41 1 1.5615 -6.1677 -6.4864 42 1 1.1773 -4.6493 0.4068 43 1 -0.6174 -6.1554 -1.5494 44 1 -0.6582 -6.3058 0.2240 45 1 -1.1072 -4.7669 -0.5492 46 1 2.9715 -6.0588 -0.5653 47 1 1.7240 -7.0604 0.2145 48 1 1.7644 -6.9099 -1.5587 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069529785.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:30 Heat of formation + Delta-G solvation = 6.695449 kcal Electronic energy + Delta-G solvation = -29585.184677 eV Core-core repulsion = 25606.677102 eV Total energy + Delta-G solvation = -3978.507576 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.20245 -39.25117 -39.08952 -36.02641 -34.89845 -33.44781 -32.77967 -31.23838 -31.09606 -30.81598 -29.83560 -27.19101 -26.70130 -25.88614 -23.44798 -22.90212 -22.67523 -21.42520 -21.17446 -20.39141 -18.16944 -17.53451 -16.99549 -16.43498 -16.27385 -16.20356 -15.65636 -15.14261 -14.96329 -14.63385 -14.26312 -13.95670 -13.67954 -13.61206 -13.46516 -13.36160 -13.17178 -12.95672 -12.87481 -12.67376 -12.29974 -12.26541 -11.73041 -11.67302 -11.58584 -11.53750 -11.29097 -11.15062 -11.08065 -10.88486 -10.83183 -10.54066 -10.36753 -10.33444 -9.98578 -9.64306 -9.50291 -9.18959 -8.85861 -8.38266 -8.03493 -7.61974 -5.99804 -4.02463 0.57381 1.17663 1.81176 2.60754 2.79549 3.32549 3.39507 3.42113 3.47994 3.66044 3.83987 4.05440 4.49031 4.64241 4.70971 4.77249 4.85358 4.90884 5.10687 5.15249 5.19509 5.26602 5.30575 5.34886 5.37638 5.43826 5.52146 5.56794 5.64272 5.67090 5.74070 5.82040 5.96866 6.01167 6.10117 6.13908 6.19727 6.24833 6.27885 6.28825 6.38610 6.42612 6.61040 6.68008 6.98891 7.14372 7.50042 7.60895 7.83140 7.97564 8.29827 8.46904 8.96192 9.14348 9.61578 11.08375 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.003066 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.948916 B = 9129.540025 C =10693.712778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.033 4.033 3 O -0.196 6.196 4 C 0.217 3.783 5 C -0.006 4.006 6 C -0.072 4.072 7 C -0.121 4.121 8 C -0.107 4.107 9 C -0.122 4.122 10 C -0.094 4.094 11 N -0.449 5.449 12 C 0.024 3.976 13 C -0.063 4.063 14 C 0.509 3.491 15 O -0.532 6.532 16 N -0.593 5.593 17 C 0.247 3.753 18 C -0.517 4.517 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.897 5.897 22 Si 0.894 3.106 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.132 3.868 27 C -0.162 4.162 28 C -0.158 4.158 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.035 0.965 40 H 0.040 0.960 41 H 0.262 0.738 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.048 0.952 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.575 13.264 17.173 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.086 4.086 3 O -0.084 6.084 4 C 0.014 3.986 5 C -0.007 4.007 6 C -0.091 4.091 7 C -0.139 4.139 8 C -0.126 4.126 9 C -0.140 4.140 10 C -0.113 4.113 11 N -0.177 5.177 12 C -0.099 4.099 13 C -0.104 4.104 14 C 0.294 3.706 15 O -0.409 6.409 16 N -0.326 5.326 17 C 0.128 3.872 18 C -0.556 4.556 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.536 5.536 22 Si 0.722 3.278 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C 0.027 3.973 27 C -0.220 4.220 28 C -0.216 4.216 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.157 0.843 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.141 13.255 16.468 21.248 hybrid contribution 0.309 -0.169 -0.531 0.637 sum 2.450 13.085 15.937 20.766 Atomic orbital electron populations 1.20288 0.83843 1.04833 1.03325 1.23179 0.94715 0.83832 1.06856 1.84370 1.17329 1.36171 1.70500 1.23505 0.82746 0.88871 1.03458 1.17292 0.87798 0.91045 1.04595 1.21249 0.90248 1.01284 0.96337 1.21125 0.98609 0.93591 1.00536 1.21334 0.97547 0.95128 0.98577 1.21043 0.92099 0.99956 1.00943 1.21230 0.99682 0.91912 0.98501 1.70432 1.22663 1.08272 1.16359 1.20727 0.87951 0.95940 1.05242 1.20078 1.02753 0.89918 0.97652 1.20030 0.78269 0.82523 0.89756 1.90697 1.49564 1.54938 1.45691 1.48317 1.65275 1.09991 1.08980 1.19226 0.97032 0.95385 0.75518 1.21454 0.97350 1.38378 0.98411 0.92371 1.24919 0.96531 0.96253 0.96472 1.69931 1.29428 1.46443 1.07809 0.86559 0.84129 0.79161 0.77986 1.20689 1.21196 1.19915 1.21014 0.94952 0.91866 0.89431 1.22162 0.95857 1.01202 1.02755 1.22144 0.99373 0.97266 1.02780 0.89835 0.90200 0.88819 0.84274 0.85124 0.85617 0.85376 0.85273 0.87624 0.87990 0.94745 0.94182 0.92860 0.90789 0.91270 0.92251 0.92935 0.92689 0.93256 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.04 36.01 0.36 -0.37 16 2 C -0.03 -0.51 7.39 -35.61 -0.26 -0.77 16 3 O -0.20 -3.15 10.52 4.08 0.04 -3.10 16 4 C 0.22 3.62 7.90 -13.89 -0.11 3.51 16 5 C -0.01 -0.09 5.87 -104.98 -0.62 -0.70 16 6 C -0.07 -0.91 9.69 -39.19 -0.38 -1.29 16 7 C -0.12 -1.18 10.03 -39.64 -0.40 -1.58 16 8 C -0.11 -0.92 10.04 -39.49 -0.40 -1.32 16 9 C -0.12 -1.10 10.03 -39.64 -0.40 -1.50 16 10 C -0.09 -1.05 9.72 -39.19 -0.38 -1.43 16 11 N -0.45 -8.33 10.91 -7.97 -0.09 -8.41 16 12 C 0.02 0.41 5.59 -82.88 -0.46 -0.05 16 13 C -0.06 -1.01 4.17 -29.04 -0.12 -1.13 16 14 C 0.51 10.80 7.67 -10.99 -0.08 10.71 16 15 O -0.53 -13.98 15.61 5.55 0.09 -13.90 16 16 N -0.59 -12.38 2.39 -167.47 -0.40 -12.78 16 17 C 0.25 6.38 4.60 -5.19 -0.02 6.36 16 18 C -0.52 -14.57 7.83 -34.44 -0.27 -14.83 16 19 H 0.06 1.66 7.63 -52.49 -0.40 1.26 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 22 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 26 C 0.13 2.10 3.17 -67.93 -0.22 1.88 16 27 C -0.16 -2.26 9.17 37.15 0.34 -1.92 16 28 C -0.16 -2.59 8.47 37.16 0.31 -2.27 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.07 7.80 -51.93 -0.40 0.66 16 32 H 0.14 1.84 7.83 -52.48 -0.41 1.43 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 35 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 36 H 0.13 1.30 7.90 -52.49 -0.41 0.89 16 37 H 0.11 1.57 7.79 -51.93 -0.40 1.17 16 38 H 0.10 1.22 7.44 -51.93 -0.39 0.83 16 39 H 0.03 0.89 6.43 -51.93 -0.33 0.56 16 40 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.07 0.95 5.77 -51.93 -0.30 0.65 16 43 H 0.07 1.12 6.66 -51.93 -0.35 0.78 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.08 1.58 6.92 -51.93 -0.36 1.22 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -36.21 401.32 -8.88 -45.09 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.09 Total: 0.95 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -3.20 Total: -5.09 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.25 Total: -47.21 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.13 Total: -17.00 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.21 -8.88 -45.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069529785.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.783 kcal (2) G-P(sol) polarization free energy of solvation -36.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds