Wall clock time and date at job start Tue Mar 31 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34773 * 126.36612 * 2 1 4 4 C 1.34426 * 107.69172 * 180.02562 * 3 2 1 5 5 C 1.47830 * 125.72705 * 179.97438 * 4 3 2 6 6 C 1.39566 * 120.14864 * 179.74842 * 5 4 3 7 7 C 1.37955 * 119.85602 * 179.71718 * 6 5 4 8 8 C 1.38360 * 120.14437 * 0.55699 * 7 6 5 9 9 C 1.38357 * 120.28807 * 359.71861 * 8 7 6 10 10 C 1.37956 * 120.14753 * 359.97438 * 9 8 7 11 11 N 1.31218 * 108.55280 * 359.97438 * 4 3 2 12 12 C 1.34164 * 108.64596 * 359.97438 * 11 4 3 13 13 C 1.50692 * 126.08262 * 180.25928 * 12 11 4 14 14 C 1.50693 * 109.47548 * 269.69573 * 13 12 11 15 15 O 1.21285 * 120.00049 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00207 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00121 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.46963 * 89.99674 * 17 16 14 19 19 H 1.07993 * 120.00183 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99611 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00368 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99751 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47045 * 89.99654 * 22 20 18 24 24 H 1.48497 * 109.47338 * 209.99634 * 22 20 18 25 25 H 1.48497 * 109.47172 * 329.99881 * 22 20 18 26 26 C 1.46500 * 120.00224 * 359.97438 * 16 14 13 27 27 C 1.52991 * 109.47372 * 120.00377 * 26 16 14 28 28 C 1.53001 * 109.47234 * 240.00627 * 26 16 14 29 29 H 1.09000 * 109.47296 * 269.97863 * 1 2 3 30 30 H 1.09006 * 109.46906 * 29.97716 * 1 2 3 31 31 H 1.09001 * 109.46947 * 149.97180 * 1 2 3 32 32 H 1.08005 * 120.06779 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.92917 * 180.27249 * 7 6 5 34 34 H 1.07994 * 119.85758 * 179.70023 * 8 7 6 35 35 H 1.08003 * 119.92537 * 180.02562 * 9 8 7 36 36 H 1.07999 * 120.07547 * 180.02562 * 10 9 8 37 37 H 1.09005 * 109.47176 * 29.69967 * 13 12 11 38 38 H 1.09003 * 109.46970 * 149.69450 * 13 12 11 39 39 H 1.08998 * 109.47288 * 209.99454 * 17 16 14 40 40 H 1.09004 * 109.47307 * 329.99866 * 17 16 14 41 41 H 0.97004 * 119.99865 * 180.02562 * 21 20 18 42 42 H 1.09004 * 109.46954 * 0.02562 * 26 16 14 43 43 H 1.09004 * 109.47154 * 60.00034 * 27 26 16 44 44 H 1.09003 * 109.47336 * 180.02562 * 27 26 16 45 45 H 1.09006 * 109.47123 * 300.00429 * 27 26 16 46 46 H 1.09005 * 109.47093 * 59.99344 * 28 26 16 47 47 H 1.08990 * 109.47271 * 179.97438 * 28 26 16 48 48 H 1.09004 * 109.46873 * 299.99711 * 28 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0853 0.0000 4 6 3.5796 0.6548 -0.0006 5 6 4.7817 1.5154 -0.0013 6 6 6.0541 0.9421 0.0034 7 6 7.1718 1.7508 -0.0032 8 6 7.0333 3.1274 -0.0029 9 6 5.7747 3.7021 -0.0018 10 6 4.6489 2.9048 -0.0016 11 7 3.5768 -0.6573 -0.0004 12 6 2.3047 -1.0836 0.0009 13 6 1.8501 -2.5203 0.0071 14 6 1.6920 -3.0033 -1.4115 15 8 1.9251 -2.2545 -2.3367 16 7 1.2907 -4.2672 -1.6523 17 6 1.1365 -4.7366 -3.0315 18 6 2.4382 -5.3266 -3.5098 19 1 3.2947 -5.3493 -2.8524 20 6 2.5358 -5.8366 -4.7871 21 7 1.4929 -5.8086 -5.5879 22 14 4.1494 -6.5673 -5.3803 23 1 4.1811 -8.0182 -5.0657 24 1 4.2694 -6.3763 -6.8480 25 1 5.2805 -5.8882 -4.6986 26 6 1.0086 -5.1717 -0.5349 27 6 -0.4482 -5.6332 -0.6076 28 6 1.9335 -6.3877 -0.6170 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5143 32 1 6.1636 -0.1324 0.0081 33 1 8.1570 1.3084 -0.0040 34 1 7.9113 3.7561 -0.0032 35 1 5.6734 4.7774 -0.0020 36 1 3.6671 3.3546 -0.0012 37 1 2.5914 -3.1338 0.5194 38 1 0.8943 -2.5967 0.5255 39 1 0.3565 -5.4970 -3.0715 40 1 0.8603 -3.8988 -3.6718 41 1 1.5615 -6.1677 -6.4864 42 1 1.1773 -4.6493 0.4068 43 1 -0.6174 -6.1554 -1.5494 44 1 -0.6582 -6.3058 0.2240 45 1 -1.1072 -4.7669 -0.5492 46 1 2.9715 -6.0588 -0.5653 47 1 1.7240 -7.0604 0.2145 48 1 1.7644 -6.9099 -1.5587 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069529785.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:29 Heat of formation + Delta-G solvation = -17.283376 kcal Electronic energy + Delta-G solvation = -29586.224477 eV Core-core repulsion = 25606.677102 eV Total energy + Delta-G solvation = -3979.547375 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.39580 -40.83074 -39.98084 -37.62214 -36.20068 -34.98011 -34.45234 -32.41527 -32.11468 -31.93718 -31.22587 -28.99757 -27.94485 -27.06360 -25.06225 -24.14680 -23.72071 -22.80298 -22.30154 -21.60516 -19.63727 -18.62504 -18.58600 -18.40845 -17.62501 -17.23875 -16.87563 -16.67826 -16.24653 -15.97938 -15.79844 -14.93997 -14.87069 -14.80246 -14.76351 -14.42816 -14.32887 -14.17705 -14.14880 -13.88894 -13.68207 -13.36815 -13.33130 -13.16039 -12.96931 -12.82191 -12.77170 -12.51791 -12.41340 -12.35656 -12.20067 -12.10568 -12.08891 -11.66502 -11.56821 -11.51776 -10.76425 -10.61949 -10.42212 -9.99220 -9.42691 -9.11245 -8.21232 -6.32366 -0.38553 0.37798 0.71740 1.32072 1.35337 1.45097 1.50665 1.59725 1.81411 2.32351 2.46416 2.80876 2.85169 3.08380 3.56222 3.66587 3.78450 3.93023 3.99000 4.03769 4.10336 4.22688 4.30261 4.32913 4.37455 4.43878 4.45475 4.55801 4.61185 4.67600 4.79484 4.86574 4.90859 4.98009 5.01046 5.05129 5.05492 5.07552 5.13957 5.17041 5.25818 5.41483 5.45404 5.46817 5.49317 5.58764 5.64442 5.89404 5.92188 6.11156 6.62579 6.73095 6.82596 7.30340 7.49740 8.85888 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.003066 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.948916 B = 9129.540025 C =10693.712778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.032 4.032 3 O -0.201 6.201 4 C 0.210 3.790 5 C -0.041 4.041 6 C -0.093 4.093 7 C -0.122 4.122 8 C -0.096 4.096 9 C -0.117 4.117 10 C -0.100 4.100 11 N -0.488 5.488 12 C -0.013 4.013 13 C -0.047 4.047 14 C 0.501 3.499 15 O -0.595 6.595 16 N -0.595 5.595 17 C 0.266 3.734 18 C -0.526 4.526 19 H 0.048 0.952 20 C 0.007 3.993 21 N -0.929 5.929 22 Si 0.958 3.042 23 H -0.261 1.261 24 H -0.282 1.282 25 H -0.279 1.279 26 C 0.122 3.878 27 C -0.156 4.156 28 C -0.154 4.154 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.154 0.846 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.135 0.865 37 H 0.118 0.882 38 H 0.150 0.850 39 H 0.030 0.970 40 H -0.010 1.010 41 H 0.265 0.735 42 H 0.117 0.883 43 H 0.037 0.963 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.038 0.962 47 H 0.092 0.908 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 14.264 19.707 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.086 4.086 3 O -0.088 6.088 4 C 0.007 3.993 5 C -0.042 4.042 6 C -0.112 4.112 7 C -0.139 4.139 8 C -0.114 4.114 9 C -0.134 4.134 10 C -0.119 4.119 11 N -0.217 5.217 12 C -0.134 4.134 13 C -0.086 4.086 14 C 0.290 3.710 15 O -0.476 6.476 16 N -0.326 5.326 17 C 0.145 3.855 18 C -0.565 4.565 19 H 0.067 0.933 20 C -0.191 4.191 21 N -0.569 5.569 22 Si 0.783 3.217 23 H -0.186 1.186 24 H -0.207 1.207 25 H -0.204 1.204 26 C 0.020 3.980 27 C -0.213 4.213 28 C -0.212 4.212 29 H 0.140 0.860 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.137 0.863 33 H 0.171 0.829 34 H 0.181 0.819 35 H 0.180 0.820 36 H 0.153 0.847 37 H 0.136 0.864 38 H 0.167 0.833 39 H 0.048 0.952 40 H 0.008 0.992 41 H 0.074 0.926 42 H 0.135 0.865 43 H 0.056 0.944 44 H 0.116 0.884 45 H 0.082 0.918 46 H 0.057 0.943 47 H 0.110 0.890 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.781 14.212 19.053 23.932 hybrid contribution 0.147 -0.392 -1.299 1.365 sum 2.928 13.820 17.753 22.688 Atomic orbital electron populations 1.20516 0.80724 1.05095 1.05805 1.23977 0.96392 0.83231 1.04958 1.84377 1.17373 1.36488 1.70605 1.24141 0.83624 0.88943 1.02606 1.17557 0.87176 0.92082 1.07396 1.21267 0.91099 1.00858 0.97973 1.21435 0.98560 0.94303 0.99633 1.21806 0.98791 0.94785 0.96024 1.21473 0.91381 1.01452 0.99132 1.21423 1.01090 0.90948 0.98452 1.70385 1.23768 1.09511 1.18031 1.21042 0.88115 0.97016 1.07228 1.20055 1.05490 0.89341 0.93758 1.20995 0.76624 0.81847 0.91574 1.90659 1.52156 1.56627 1.48175 1.48349 1.64882 1.10969 1.08400 1.18626 0.95894 0.92976 0.77981 1.21663 0.97838 1.38324 0.98661 0.93323 1.25761 0.99950 0.96734 0.96677 1.70042 1.31369 1.47313 1.08187 0.85561 0.79572 0.79228 0.77358 1.18587 1.20721 1.20410 1.21483 0.96172 0.91232 0.89097 1.22122 0.94430 1.02116 1.02663 1.22094 0.98613 0.97912 1.02535 0.86020 0.89239 0.89189 0.86269 0.82865 0.81886 0.81989 0.84707 0.86354 0.83263 0.95170 0.99175 0.92607 0.86499 0.94418 0.88353 0.91810 0.94273 0.88961 0.93780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 10.04 71.24 0.72 -0.61 16 2 C -0.03 -1.01 7.39 24.84 0.18 -0.82 16 3 O -0.20 -6.60 10.52 -8.33 -0.09 -6.68 16 4 C 0.21 7.34 7.90 87.33 0.69 8.03 16 5 C -0.04 -1.17 5.87 -20.10 -0.12 -1.29 16 6 C -0.09 -2.43 9.69 22.52 0.22 -2.21 16 7 C -0.12 -2.23 10.03 22.23 0.22 -2.01 16 8 C -0.10 -1.35 10.04 22.33 0.22 -1.12 16 9 C -0.12 -1.78 10.03 22.23 0.22 -1.56 16 10 C -0.10 -2.18 9.72 22.53 0.22 -1.96 16 11 N -0.49 -19.02 10.91 -293.19 -3.20 -22.22 16 12 C -0.01 -0.45 5.59 41.36 0.23 -0.22 16 13 C -0.05 -1.45 4.17 29.10 0.12 -1.32 16 14 C 0.50 21.86 7.67 87.65 0.67 22.53 16 15 O -0.60 -33.14 15.61 -3.04 -0.05 -33.19 16 16 N -0.59 -25.40 2.39 -802.14 -1.91 -27.32 16 17 C 0.27 14.53 4.60 85.63 0.39 14.93 16 18 C -0.53 -30.97 7.83 25.60 0.20 -30.77 16 19 H 0.05 2.89 7.63 -2.91 -0.02 2.87 16 20 C 0.01 0.43 5.46 84.66 0.46 0.89 16 21 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 22 Si 0.96 46.71 29.54 68.60 2.03 48.73 16 23 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 25 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 26 C 0.12 3.70 3.17 44.99 0.14 3.84 16 27 C -0.16 -4.03 9.17 71.98 0.66 -3.36 16 28 C -0.15 -4.89 8.47 71.98 0.61 -4.28 16 29 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.09 1.93 7.80 -2.39 -0.02 1.91 16 32 H 0.12 3.48 7.83 -2.91 -0.02 3.45 16 33 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.14 2.66 7.90 -2.91 -0.02 2.64 16 37 H 0.12 3.36 7.79 -2.38 -0.02 3.34 16 38 H 0.15 3.09 7.44 -2.39 -0.02 3.07 16 39 H 0.03 1.66 6.43 -2.39 -0.02 1.64 16 40 H -0.01 -0.63 7.42 -2.38 -0.02 -0.65 16 41 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.12 2.58 5.77 -2.39 -0.01 2.56 16 43 H 0.04 1.21 6.66 -2.39 -0.02 1.20 16 44 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 46 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 47 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.04 1.73 6.92 -2.39 -0.02 1.71 16 Total: -1.00 -87.42 401.32 4.09 -83.33 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.96 Total: 15.77 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 6.07 Total: -1.34 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -4.83 Total: -106.63 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.14 Total: -39.87 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -87.42 4.09 -83.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069529785.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.048 kcal (2) G-P(sol) polarization free energy of solvation -87.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds