Wall clock time and date at job start Tue Mar 31 2020 05:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35705 * 117.00299 * 2 1 4 4 C 1.39003 * 119.90852 * 180.02562 * 3 2 1 5 5 C 1.37704 * 120.08830 * 180.02562 * 4 3 2 6 6 C 1.39752 * 119.90972 * 0.23014 * 5 4 3 7 7 C 1.47556 * 120.08883 * 179.72364 * 6 5 4 8 8 O 1.21589 * 120.00225 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00047 * 179.97438 * 7 6 5 10 10 C 1.39491 * 119.99993 * 180.02562 * 9 7 6 11 11 N 1.32289 * 119.72973 * 0.02562 * 10 9 7 12 12 C 1.31962 * 121.68637 * 179.97438 * 11 10 9 13 13 C 1.38085 * 120.95958 * 0.02681 * 12 11 10 14 14 C 1.38782 * 119.35611 * 359.97438 * 13 12 11 15 15 C 1.38793 * 118.44955 * 359.74390 * 14 13 12 16 16 O 1.35981 * 120.49719 * 180.24758 * 15 14 13 17 17 C 1.42901 * 117.00082 * 0.27344 * 16 15 14 18 18 C 1.52998 * 109.47046 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.46921 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00262 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99916 * 179.97438 * 19 18 17 22 22 N 1.31506 * 120.00020 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99993 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46995 * 60.00163 * 23 21 19 25 25 H 1.48497 * 109.47299 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47377 * 300.00200 * 23 21 19 27 27 C 1.39752 * 119.81813 * 359.51077 * 6 5 4 28 28 C 1.37697 * 119.91420 * 0.49042 * 27 6 5 29 29 H 1.08994 * 109.47417 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46849 * 300.00253 * 1 2 3 31 31 H 1.09006 * 109.47179 * 59.99704 * 1 2 3 32 32 H 1.07999 * 119.95588 * 0.02562 * 4 3 2 33 33 H 1.08002 * 120.04172 * 179.97438 * 5 4 3 34 34 H 0.96998 * 120.00029 * 0.02562 * 9 7 6 35 35 H 1.07998 * 119.52169 * 179.97438 * 12 11 10 36 36 H 1.08001 * 120.32085 * 179.97438 * 13 12 11 37 37 H 1.08001 * 120.77780 * 179.97438 * 14 13 12 38 38 H 1.08995 * 109.47123 * 300.00202 * 17 16 15 39 39 H 1.08997 * 109.46805 * 60.00273 * 17 16 15 40 40 H 1.08995 * 109.47238 * 300.00026 * 18 17 16 41 41 H 1.08997 * 109.47181 * 60.00398 * 18 17 16 42 42 H 0.97005 * 120.00197 * 179.97438 * 22 21 19 43 43 H 1.08001 * 120.04647 * 180.23347 * 27 6 5 44 44 H 1.07995 * 119.96188 * 179.74031 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 3.4334 1.2796 -0.0005 5 6 4.0625 2.5045 0.0000 6 6 3.3032 3.6778 0.0059 7 6 3.9732 4.9925 0.0127 8 8 5.1874 5.0561 0.0126 9 7 3.2393 6.1229 0.0179 10 6 3.8726 7.3657 0.0237 11 7 5.1940 7.4286 0.0236 12 6 5.8330 8.5831 0.0285 13 6 5.1409 9.7780 0.0346 14 6 3.7532 9.7605 0.0349 15 6 3.1075 8.5320 0.0237 16 8 1.7493 8.4663 0.0185 17 6 1.0397 9.7067 0.0191 18 6 -0.4656 9.4332 0.0135 19 6 -1.2138 10.7413 0.0135 20 1 -0.6700 11.6745 0.0175 21 6 -2.5926 10.7469 0.0083 22 7 -3.2547 9.6106 0.0039 23 14 -3.5201 12.3683 0.0090 24 1 -3.1536 13.1487 -1.2002 25 1 -4.9811 12.1029 0.0034 26 1 -3.1627 13.1426 1.2248 27 6 1.9077 3.6025 0.0010 28 6 1.2863 2.3737 0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 4.0194 0.3724 -0.0014 33 1 5.1411 2.5584 0.0000 34 1 2.2706 6.0722 0.0176 35 1 6.9129 8.5937 0.0287 36 1 5.6744 10.7171 0.0390 37 1 3.1889 10.6814 0.0400 38 1 1.3021 10.2750 0.9114 39 1 1.3086 10.2794 -0.8685 40 1 -0.7283 8.8648 -0.8786 41 1 -0.7341 8.8607 0.9013 42 1 -4.2247 9.6145 0.0006 43 1 1.3174 4.5069 0.0017 44 1 0.2080 2.3147 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069569219.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:53 Heat of formation + Delta-G solvation = -57.391686 kcal Electronic energy + Delta-G solvation = -28164.232251 eV Core-core repulsion = 24047.112554 eV Total energy + Delta-G solvation = -4117.119697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.15901 -41.28391 -40.32992 -39.13334 -38.04528 -36.08769 -35.44834 -32.97356 -32.60080 -32.08815 -31.49443 -30.18618 -28.30177 -27.16789 -25.53734 -24.40920 -24.00632 -23.32512 -22.58484 -21.40510 -19.94796 -19.31473 -18.89029 -18.50340 -18.03400 -17.21351 -17.18800 -17.08517 -16.74740 -16.49581 -16.24205 -16.12344 -15.83199 -15.32058 -15.16489 -14.84572 -14.71063 -14.45817 -14.34376 -14.17108 -13.70208 -13.69532 -13.53305 -13.29703 -12.83884 -12.81182 -12.72539 -12.45250 -12.11249 -11.88743 -11.88012 -11.71193 -11.64416 -11.47897 -11.39540 -10.59612 -10.42577 -10.22990 -10.18035 -9.39670 -8.86047 -8.25112 -6.37437 -0.31898 0.20897 0.24720 0.28644 1.42953 1.45332 1.53059 1.76462 1.77792 2.10268 2.23830 2.44525 2.70445 2.92054 3.10179 3.32867 3.60235 3.69450 3.80089 3.85128 3.99597 4.10311 4.12267 4.27911 4.29666 4.33525 4.39358 4.41834 4.47147 4.52571 4.74722 4.74869 4.87214 4.95589 5.02432 5.11753 5.16458 5.21711 5.28642 5.31523 5.51021 5.52628 5.55811 5.73677 6.08338 6.14207 6.27817 6.32281 6.76887 6.89867 7.20654 7.32426 8.87179 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.007946 B = 0.002880 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3523.114059 B = 9718.939035 C =13216.284352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.323 6.323 3 C 0.154 3.846 4 C -0.162 4.162 5 C -0.021 4.021 6 C -0.192 4.192 7 C 0.553 3.447 8 O -0.516 6.516 9 N -0.649 5.649 10 C 0.309 3.691 11 N -0.473 5.473 12 C 0.074 3.926 13 C -0.143 4.143 14 C -0.148 4.148 15 C 0.042 3.958 16 O -0.330 6.330 17 C 0.083 3.917 18 C 0.031 3.969 19 C -0.546 4.546 20 H 0.070 0.930 21 C 0.006 3.994 22 N -0.928 5.928 23 Si 0.969 3.031 24 H -0.265 1.265 25 H -0.285 1.285 26 H -0.265 1.265 27 C -0.044 4.044 28 C -0.215 4.215 29 H 0.123 0.877 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.158 0.842 33 H 0.145 0.855 34 H 0.425 0.575 35 H 0.188 0.812 36 H 0.177 0.823 37 H 0.158 0.842 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.266 0.734 43 H 0.138 0.862 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.816 -12.758 0.029 17.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.107 3.893 4 C -0.181 4.181 5 C -0.040 4.040 6 C -0.195 4.195 7 C 0.343 3.657 8 O -0.390 6.390 9 N -0.297 5.297 10 C 0.077 3.923 11 N -0.189 5.189 12 C -0.083 4.083 13 C -0.164 4.164 14 C -0.174 4.174 15 C -0.009 4.009 16 O -0.243 6.243 17 C 0.009 3.991 18 C -0.007 4.007 19 C -0.584 4.584 20 H 0.088 0.912 21 C -0.193 4.193 22 N -0.567 5.567 23 Si 0.793 3.207 24 H -0.190 1.190 25 H -0.210 1.210 26 H -0.190 1.190 27 C -0.063 4.063 28 C -0.233 4.233 29 H 0.142 0.858 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.175 0.825 33 H 0.162 0.838 34 H 0.265 0.735 35 H 0.205 0.795 36 H 0.195 0.805 37 H 0.176 0.824 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.075 0.925 43 H 0.156 0.844 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 12.880 -14.016 0.024 19.036 hybrid contribution -2.013 1.715 0.001 2.644 sum 10.867 -12.301 0.025 16.414 Atomic orbital electron populations 1.23454 0.75994 1.06025 1.02622 1.86034 1.23787 1.26297 1.87474 1.19483 0.92674 0.84734 0.92404 1.20588 0.91577 0.98821 1.07084 1.21122 1.00804 0.89906 0.92158 1.19708 0.94342 0.92260 1.13221 1.18693 0.86904 0.84178 0.75970 1.90812 1.13997 1.87124 1.47066 1.43411 1.11343 1.03029 1.71940 1.17975 0.88601 0.83916 1.01789 1.67684 1.05726 1.31003 1.14460 1.23092 1.01686 0.86203 0.97320 1.22301 0.92980 1.01157 0.99930 1.21916 0.96647 0.96606 1.02255 1.19733 0.84153 0.94166 1.02800 1.86020 1.14212 1.35553 1.88531 1.22974 0.92350 0.82886 1.00929 1.18934 0.88446 0.96965 0.96311 1.21370 0.91995 0.92937 1.52063 0.91151 1.25932 0.98783 1.00319 0.94308 1.70083 1.08122 1.27876 1.50596 0.85440 0.77011 0.78926 0.79327 1.18997 1.21017 1.19008 1.21306 0.92758 0.98810 0.93436 1.21433 1.01740 0.91289 1.08888 0.85844 0.91473 0.91478 0.82482 0.83766 0.73488 0.79527 0.80528 0.82400 0.91754 0.91761 0.97959 0.97949 0.92529 0.84395 0.82500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.25 16 2 O -0.32 -5.59 10.48 -90.25 -0.95 -6.53 16 3 C 0.15 3.01 6.70 22.64 0.15 3.16 16 4 C -0.16 -3.17 9.97 22.33 0.22 -2.94 16 5 C -0.02 -0.48 9.58 22.51 0.22 -0.27 16 6 C -0.19 -5.03 5.87 -20.09 -0.12 -5.15 16 7 C 0.55 17.89 7.73 86.70 0.67 18.56 16 8 O -0.52 -19.52 14.59 -4.00 -0.06 -19.58 16 9 N -0.65 -20.90 5.34 -310.88 -1.66 -22.56 16 10 C 0.31 10.66 7.44 133.02 0.99 11.65 16 11 N -0.47 -16.05 7.87 -192.62 -1.52 -17.57 16 12 C 0.07 1.88 11.17 84.64 0.95 2.82 16 13 C -0.14 -3.13 10.10 22.36 0.23 -2.90 16 14 C -0.15 -4.02 9.14 22.53 0.21 -3.82 16 15 C 0.04 1.41 6.72 22.71 0.15 1.56 16 16 O -0.33 -12.32 9.38 -93.34 -0.88 -13.19 16 17 C 0.08 3.22 4.70 71.98 0.34 3.56 16 18 C 0.03 1.53 5.34 29.85 0.16 1.69 16 19 C -0.55 -28.89 9.11 25.60 0.23 -28.66 16 20 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 21 C 0.01 0.30 5.46 84.66 0.46 0.76 16 22 N -0.93 -53.63 13.29 21.45 0.28 -53.35 16 23 Si 0.97 41.59 29.54 68.60 2.03 43.61 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 26 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 27 C -0.04 -1.00 9.53 22.51 0.21 -0.79 16 28 C -0.22 -4.15 9.01 22.33 0.20 -3.94 16 29 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.61 7.65 -2.38 -0.02 0.59 16 31 H 0.07 0.61 7.65 -2.38 -0.02 0.59 16 32 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.14 3.23 7.64 -2.91 -0.02 3.20 16 34 H 0.43 12.43 6.06 -92.71 -0.56 11.87 16 35 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.18 2.36 8.06 -2.91 -0.02 2.33 16 37 H 0.16 3.83 6.44 -2.91 -0.02 3.81 16 38 H 0.06 2.33 7.69 -2.39 -0.02 2.31 16 39 H 0.06 2.33 7.71 -2.39 -0.02 2.31 16 40 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 43 H 0.14 2.89 6.40 -2.91 -0.02 2.87 16 44 H 0.16 2.30 6.28 -2.91 -0.02 2.28 16 Total: -1.00 -72.56 377.37 4.12 -68.43 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.49 Total: 24.19 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 6.38 Total: -3.46 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -2.89 Total: -93.47 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -1.88 Total: -39.30 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -72.56 4.12 -68.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069569219.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.041 kcal (2) G-P(sol) polarization free energy of solvation -72.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds