Wall clock time and date at job start Tue Mar 31 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99742 * 2 1 4 4 H 1.48504 * 109.46778 * 270.00297 * 3 2 1 5 5 H 1.48499 * 109.47209 * 30.00353 * 3 2 1 6 6 H 1.48496 * 109.46893 * 150.00295 * 3 2 1 7 7 C 1.37880 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99702 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.46886 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00383 * 89.99957 * 10 9 7 12 12 C 1.50707 * 109.46935 * 270.00600 * 11 10 9 13 13 C 1.38227 * 119.62059 * 95.01845 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.74122 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61137 * 274.99275 * 12 11 10 18 18 C 1.34777 * 119.99928 * 270.00390 * 10 9 7 19 19 O 1.21287 * 120.00124 * 180.02562 * 18 10 9 20 20 C 1.50698 * 120.00377 * 359.97438 * 18 10 9 21 21 S 1.81397 * 109.47334 * 180.02562 * 20 18 10 22 22 C 1.76202 * 102.99935 * 180.02562 * 21 20 18 23 23 C 1.38973 * 120.08030 * 359.72100 * 22 21 20 24 24 C 1.38087 * 119.91841 * 179.72108 * 23 22 21 25 25 C 1.38294 * 120.07934 * 0.53915 * 24 23 22 26 26 C 1.38306 * 120.16390 * 359.75883 * 25 24 23 27 27 C 1.38083 * 120.07498 * 359.96344 * 26 25 24 28 28 H 0.96992 * 120.00111 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47036 * 59.99986 * 9 7 2 30 30 H 1.08997 * 109.47234 * 299.99688 * 9 7 2 31 31 H 1.08997 * 109.47679 * 150.00067 * 11 10 9 32 32 H 1.09003 * 109.46652 * 30.00027 * 11 10 9 33 33 H 1.07998 * 120.41916 * 359.95342 * 13 12 11 34 34 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 35 35 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 36 36 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 37 37 H 1.08996 * 109.47123 * 300.00770 * 20 18 10 38 38 H 1.09001 * 109.46493 * 60.00386 * 20 18 10 39 39 H 1.08006 * 120.03770 * 0.02562 * 23 22 21 40 40 H 1.08004 * 119.95751 * 180.27831 * 24 23 22 41 41 H 1.08000 * 119.92200 * 179.74294 * 25 24 23 42 42 H 1.07994 * 119.96370 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.03750 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 4.2437 -3.2661 -1.2696 12 6 2.9876 -3.9766 -1.7041 13 6 2.1220 -3.3565 -2.5855 14 6 0.9722 -4.0210 -2.9829 15 6 0.7297 -5.2859 -2.4688 16 6 1.6412 -5.8424 -1.5919 17 7 2.7274 -5.1827 -1.2392 18 6 4.2250 -3.2102 1.1663 19 8 4.6298 -4.3535 1.1664 20 6 3.9748 -2.4994 2.4713 21 16 4.3688 -3.6103 3.8502 22 6 4.0200 -2.6226 5.2670 23 6 3.5646 -1.3187 5.1122 24 6 3.2867 -0.5496 6.2249 25 6 3.4718 -1.0715 7.4921 26 6 3.9307 -2.3666 7.6501 27 6 4.2052 -3.1435 6.5420 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6803 0.8888 30 1 3.8746 -0.6799 -0.8911 31 1 5.0457 -3.9927 -1.1395 32 1 4.5315 -2.5395 -2.0296 33 1 2.3406 -2.3683 -2.9624 34 1 0.2795 -3.5627 -3.6734 35 1 -0.1579 -5.8311 -2.7538 36 1 1.4618 -6.8287 -1.1903 37 1 4.6052 -1.6121 2.5285 38 1 2.9269 -2.2050 2.5295 39 1 3.4235 -0.9092 4.1228 40 1 2.9285 0.4623 6.1053 41 1 3.2576 -0.4663 8.3606 42 1 4.0745 -2.7708 8.6412 43 1 4.5640 -4.1546 6.6661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069770251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:33 Heat of formation + Delta-G solvation = 36.733357 kcal Electronic energy + Delta-G solvation = -26706.955639 eV Core-core repulsion = 23036.670381 eV Total energy + Delta-G solvation = -3670.285258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 342.114 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -39.91058 -38.85912 -38.79870 -35.32475 -32.84255 -32.02095 -31.65387 -31.07971 -30.85629 -29.38733 -28.23904 -25.81423 -23.06448 -22.76428 -22.60290 -22.39930 -21.67647 -18.89376 -17.61926 -17.25373 -16.70210 -16.27577 -16.11872 -15.74581 -15.39172 -15.29570 -14.87100 -14.66789 -14.35885 -14.21072 -13.45388 -13.39946 -13.23185 -13.13595 -12.90556 -12.83835 -12.69380 -12.36842 -12.12795 -12.04265 -11.68862 -11.40048 -11.29282 -11.09268 -11.02009 -10.75693 -10.40497 -9.89675 -9.73376 -9.63820 -9.42082 -9.28572 -8.95422 -8.92684 -8.83593 -8.51152 -7.91826 -7.14582 -6.30627 -4.33112 1.29309 1.42916 1.50698 1.66941 1.81348 2.64655 3.07098 3.14271 3.16469 3.18165 3.70382 3.78099 4.15744 4.40710 4.74652 4.91236 4.95953 4.98932 5.02637 5.14465 5.21987 5.26016 5.34625 5.44496 5.50232 5.57530 5.60132 5.75632 5.79664 5.83224 5.93155 6.03919 6.13361 6.21755 6.27790 6.36152 6.42638 6.47326 6.54777 6.58512 6.66128 6.96270 7.13085 7.17147 7.31399 7.92976 8.27383 8.53341 8.70431 8.79843 9.27491 10.81436 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.009751 B = 0.004107 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.677201 B = 6815.673592 C = 8628.361582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.079 3.921 3 Si 0.866 3.134 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.205 3.795 10 N -0.583 5.583 11 C 0.174 3.826 12 C 0.118 3.882 13 C -0.127 4.127 14 C -0.079 4.079 15 C -0.177 4.177 16 C 0.087 3.913 17 N -0.461 5.461 18 C 0.539 3.461 19 O -0.528 6.528 20 C -0.138 4.138 21 S -0.048 6.048 22 C -0.092 4.092 23 C -0.134 4.134 24 C -0.099 4.099 25 C -0.134 4.134 26 C -0.105 4.105 27 C -0.105 4.105 28 H 0.266 0.734 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.147 0.853 37 H 0.110 0.890 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.895 -2.506 3.885 7.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.098 0.902 9 C 0.083 3.917 10 N -0.315 5.315 11 C 0.050 3.950 12 C -0.021 4.021 13 C -0.148 4.148 14 C -0.105 4.105 15 C -0.197 4.197 16 C -0.070 4.070 17 N -0.170 5.170 18 C 0.325 3.675 19 O -0.405 6.405 20 C -0.289 4.289 21 S 0.197 5.803 22 C -0.205 4.205 23 C -0.158 4.158 24 C -0.119 4.119 25 C -0.155 4.155 26 C -0.125 4.125 27 C -0.129 4.129 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.164 0.836 37 H 0.128 0.872 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.965 -4.529 4.237 9.326 hybrid contribution -1.310 3.030 -0.540 3.345 sum 5.655 -1.499 3.697 6.920 Atomic orbital electron populations 1.69888 1.06175 1.27152 1.49054 1.24861 0.94663 0.98647 0.94312 0.87016 0.80438 0.84292 0.79015 1.19845 1.20875 1.18907 1.21334 0.88747 0.95017 1.52632 0.90242 1.19929 0.96310 0.77672 0.97739 1.47737 1.64603 1.15362 1.03785 1.20135 0.93449 0.95605 0.85794 1.21511 0.97119 0.90706 0.92800 1.21913 0.94721 1.00116 0.98027 1.21478 0.96444 0.94214 0.98373 1.22039 1.00745 0.96943 1.00001 1.22621 0.90203 0.99434 0.94783 1.67532 1.19576 1.08250 1.21622 1.19330 0.77792 0.86070 0.84350 1.90708 1.46095 1.16881 1.86832 1.23863 1.08404 1.01887 0.94721 1.85909 1.81862 1.19018 0.93491 1.22181 1.02612 0.97514 0.98217 1.21346 1.01214 0.93354 0.99892 1.21087 0.98706 0.99724 0.92341 1.21118 1.01316 0.95925 0.97156 1.21031 0.99022 0.94281 0.98119 1.20707 1.01663 1.00046 0.90485 0.92347 0.94875 0.94932 0.88943 0.89294 0.84850 0.85393 0.85605 0.83575 0.87222 0.85303 0.85468 0.85840 0.86163 0.85866 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.53 13.96 55.43 0.77 -23.75 16 2 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 18.62 27.47 -169.99 -4.67 13.95 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.26 -5.31 6.54 56.52 0.37 -4.94 16 7 C -0.54 -13.18 9.69 -34.44 -0.33 -13.51 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 9 C 0.20 4.17 4.08 -5.20 -0.02 4.15 16 10 N -0.58 -11.42 2.44 -176.43 -0.43 -11.85 16 11 C 0.17 3.08 5.76 -5.19 -0.03 3.05 16 12 C 0.12 2.22 6.36 -82.58 -0.53 1.69 16 13 C -0.13 -2.25 9.57 -39.44 -0.38 -2.63 16 14 C -0.08 -1.28 10.18 -39.28 -0.40 -1.68 16 15 C -0.18 -2.71 10.11 -39.44 -0.40 -3.11 16 16 C 0.09 1.47 11.18 -17.55 -0.20 1.27 16 17 N -0.46 -9.08 10.27 -9.47 -0.10 -9.18 16 18 C 0.54 10.94 7.69 -10.99 -0.08 10.85 16 19 O -0.53 -11.79 15.44 5.55 0.09 -11.71 16 20 C -0.14 -2.50 3.37 36.00 0.12 -2.38 16 21 S -0.05 -0.82 21.06 -107.50 -2.26 -3.09 16 22 C -0.09 -1.42 6.11 -39.04 -0.24 -1.66 16 23 C -0.13 -2.02 9.36 -39.36 -0.37 -2.39 16 24 C -0.10 -1.29 10.04 -39.62 -0.40 -1.69 16 25 C -0.13 -1.56 10.04 -39.54 -0.40 -1.95 16 26 C -0.10 -1.21 10.04 -39.61 -0.40 -1.61 16 27 C -0.10 -1.41 9.79 -39.37 -0.39 -1.80 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.03 0.66 5.50 -51.93 -0.29 0.37 16 30 H 0.03 0.63 7.32 -51.93 -0.38 0.25 16 31 H 0.09 1.64 7.42 -51.93 -0.39 1.25 16 32 H 0.09 1.30 7.79 -51.93 -0.40 0.90 16 33 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 34 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 35 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.11 1.77 7.00 -51.93 -0.36 1.40 16 38 H 0.13 2.51 7.62 -51.92 -0.40 2.11 16 39 H 0.13 1.95 5.88 -52.48 -0.31 1.64 16 40 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 42 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 43 H 0.13 1.51 8.06 -52.48 -0.42 1.08 16 LS Contribution 379.61 15.07 5.72 5.72 Total: -1.00 -30.99 379.61 -10.91 -41.89 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.50 Total: 9.48 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -4.53 Total: -11.47 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.25 Total: -44.78 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.67 Total: 13.95 kcal Atomic # 16 Polarization: -0.82 SS G_CDS: -2.26 Total: -3.09 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.99 -10.91 -41.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069770251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.627 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds