Wall clock time and date at job start Tue Mar 31 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99742 * 2 1 4 4 H 1.48504 * 109.46778 * 270.00297 * 3 2 1 5 5 H 1.48499 * 109.47209 * 30.00353 * 3 2 1 6 6 H 1.48496 * 109.46893 * 150.00295 * 3 2 1 7 7 C 1.37880 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99702 * 179.97438 * 7 2 1 10 10 N 1.46497 * 109.46886 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00383 * 89.99957 * 10 9 7 12 12 C 1.50707 * 109.46935 * 270.00600 * 11 10 9 13 13 C 1.38227 * 119.62059 * 95.01845 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.74122 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61137 * 274.99275 * 12 11 10 18 18 C 1.34777 * 119.99928 * 270.00390 * 10 9 7 19 19 O 1.21287 * 120.00124 * 180.02562 * 18 10 9 20 20 C 1.50698 * 120.00377 * 359.97438 * 18 10 9 21 21 S 1.81397 * 109.47334 * 180.02562 * 20 18 10 22 22 C 1.76202 * 102.99935 * 180.02562 * 21 20 18 23 23 C 1.38973 * 120.08030 * 359.72100 * 22 21 20 24 24 C 1.38087 * 119.91841 * 179.72108 * 23 22 21 25 25 C 1.38294 * 120.07934 * 0.53915 * 24 23 22 26 26 C 1.38306 * 120.16390 * 359.75883 * 25 24 23 27 27 C 1.38083 * 120.07498 * 359.96344 * 26 25 24 28 28 H 0.96992 * 120.00111 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47036 * 59.99986 * 9 7 2 30 30 H 1.08997 * 109.47234 * 299.99688 * 9 7 2 31 31 H 1.08997 * 109.47679 * 150.00067 * 11 10 9 32 32 H 1.09003 * 109.46652 * 30.00027 * 11 10 9 33 33 H 1.07998 * 120.41916 * 359.95342 * 13 12 11 34 34 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 35 35 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 36 36 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 37 37 H 1.08996 * 109.47123 * 300.00770 * 20 18 10 38 38 H 1.09001 * 109.46493 * 60.00386 * 20 18 10 39 39 H 1.08006 * 120.03770 * 0.02562 * 23 22 21 40 40 H 1.08004 * 119.95751 * 180.27831 * 24 23 22 41 41 H 1.08000 * 119.92200 * 179.74294 * 25 24 23 42 42 H 1.07994 * 119.96370 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.03750 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 4.2437 -3.2661 -1.2696 12 6 2.9876 -3.9766 -1.7041 13 6 2.1220 -3.3565 -2.5855 14 6 0.9722 -4.0210 -2.9829 15 6 0.7297 -5.2859 -2.4688 16 6 1.6412 -5.8424 -1.5919 17 7 2.7274 -5.1827 -1.2392 18 6 4.2250 -3.2102 1.1663 19 8 4.6298 -4.3535 1.1664 20 6 3.9748 -2.4994 2.4713 21 16 4.3688 -3.6103 3.8502 22 6 4.0200 -2.6226 5.2670 23 6 3.5646 -1.3187 5.1122 24 6 3.2867 -0.5496 6.2249 25 6 3.4718 -1.0715 7.4921 26 6 3.9307 -2.3666 7.6501 27 6 4.2052 -3.1435 6.5420 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6803 0.8888 30 1 3.8746 -0.6799 -0.8911 31 1 5.0457 -3.9927 -1.1395 32 1 4.5315 -2.5395 -2.0296 33 1 2.3406 -2.3683 -2.9624 34 1 0.2795 -3.5627 -3.6734 35 1 -0.1579 -5.8311 -2.7538 36 1 1.4618 -6.8287 -1.1903 37 1 4.6052 -1.6121 2.5285 38 1 2.9269 -2.2050 2.5295 39 1 3.4235 -0.9092 4.1228 40 1 2.9285 0.4623 6.1053 41 1 3.2576 -0.4663 8.3606 42 1 4.0745 -2.7708 8.6412 43 1 4.5640 -4.1546 6.6661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069770251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:29 Heat of formation + Delta-G solvation = 20.538799 kcal Electronic energy + Delta-G solvation = -26707.657888 eV Core-core repulsion = 23036.670381 eV Total energy + Delta-G solvation = -3670.987506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 342.114 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -41.33652 -40.36227 -39.80988 -36.95512 -34.65501 -33.45284 -33.03490 -32.19781 -31.86721 -30.76010 -30.00200 -27.25466 -24.59335 -24.22593 -23.73026 -23.51919 -23.00420 -20.38417 -19.12372 -18.83902 -18.17794 -17.67946 -17.40986 -16.98153 -16.89603 -16.68657 -16.12216 -16.00422 -15.87253 -15.46392 -14.87898 -14.77961 -14.53817 -14.32128 -14.30778 -14.10387 -13.96181 -13.89796 -13.74372 -13.48719 -13.22267 -12.76088 -12.63621 -12.47240 -12.31557 -12.06532 -12.01566 -11.69058 -11.17138 -10.99580 -10.76642 -10.71701 -10.69123 -10.34352 -9.94152 -9.87829 -9.51433 -8.43357 -8.25900 -6.32570 0.17390 0.25813 0.35267 0.41536 0.48236 1.36390 1.39744 1.42432 1.49872 1.56997 2.21177 2.34822 2.77427 3.02874 3.08014 3.42845 3.51744 3.87094 3.91347 3.94089 4.01880 4.04746 4.22718 4.24489 4.28673 4.31914 4.48103 4.51430 4.56407 4.58359 4.68217 4.79638 4.80789 4.81268 4.92386 5.06847 5.27156 5.33167 5.34813 5.43662 5.45778 5.56024 5.58050 5.87614 6.00075 6.17164 6.47836 6.73544 7.13037 7.18506 7.32858 8.89731 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.009751 B = 0.004107 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.677201 B = 6815.673592 C = 8628.361582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.026 3.974 3 Si 0.931 3.069 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.237 1.237 7 C -0.524 4.524 8 H 0.028 0.972 9 C 0.209 3.791 10 N -0.582 5.582 11 C 0.169 3.831 12 C 0.098 3.902 13 C -0.141 4.141 14 C -0.089 4.089 15 C -0.170 4.170 16 C 0.071 3.929 17 N -0.497 5.497 18 C 0.532 3.468 19 O -0.553 6.553 20 C -0.126 4.126 21 S -0.079 6.079 22 C -0.109 4.109 23 C -0.154 4.154 24 C -0.108 4.108 25 C -0.126 4.126 26 C -0.099 4.099 27 C -0.114 4.114 28 H 0.265 0.735 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.138 0.862 34 H 0.152 0.848 35 H 0.162 0.838 36 H 0.169 0.831 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.141 0.859 41 H 0.155 0.845 42 H 0.159 0.841 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.688 -1.077 5.028 8.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.173 4.173 3 Si 0.754 3.246 4 H -0.188 1.188 5 H -0.218 1.218 6 H -0.160 1.160 7 C -0.563 4.563 8 H 0.046 0.954 9 C 0.088 3.912 10 N -0.313 5.313 11 C 0.046 3.954 12 C -0.041 4.041 13 C -0.162 4.162 14 C -0.114 4.114 15 C -0.190 4.190 16 C -0.087 4.087 17 N -0.207 5.207 18 C 0.318 3.682 19 O -0.432 6.432 20 C -0.276 4.276 21 S 0.165 5.835 22 C -0.222 4.222 23 C -0.178 4.178 24 C -0.128 4.128 25 C -0.146 4.146 26 C -0.119 4.119 27 C -0.137 4.137 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.137 0.863 33 H 0.156 0.844 34 H 0.169 0.831 35 H 0.180 0.820 36 H 0.186 0.814 37 H 0.146 0.854 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.158 0.842 41 H 0.172 0.828 42 H 0.176 0.824 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.784 -3.101 5.376 9.956 hybrid contribution -1.656 2.481 -0.807 3.090 sum 6.128 -0.621 4.568 7.669 Atomic orbital electron populations 1.70054 1.08322 1.28026 1.51440 1.25658 0.95244 1.02486 0.93941 0.85967 0.79965 0.79013 0.79646 1.18761 1.21765 1.15967 1.21312 0.90685 0.92880 1.51410 0.95387 1.19861 0.93559 0.78525 0.99292 1.47778 1.63985 1.15179 1.04382 1.20356 0.93103 0.96213 0.85710 1.21666 0.97890 0.90945 0.93588 1.22071 0.95371 1.00494 0.98249 1.21883 0.96309 0.94653 0.98599 1.22415 1.01279 0.96681 0.98603 1.23119 0.89982 1.00372 0.95184 1.67510 1.21229 1.09134 1.22816 1.19711 0.77358 0.85923 0.85201 1.90684 1.47292 1.17903 1.87291 1.23683 1.07332 1.02460 0.94146 1.85875 1.82617 1.20357 0.94657 1.22160 1.04659 0.97610 0.97775 1.21400 1.02421 0.93676 1.00304 1.21381 0.98528 1.00419 0.92437 1.21565 0.99344 0.96157 0.97584 1.21459 0.97419 0.94053 0.98966 1.20988 1.01590 1.00903 0.90266 0.92544 0.93464 0.92507 0.89466 0.86266 0.84397 0.83054 0.82013 0.81438 0.85385 0.87322 0.86643 0.84164 0.82758 0.82362 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.33 13.96 21.45 0.30 -53.03 16 2 C 0.03 1.32 5.47 84.65 0.46 1.78 16 3 Si 0.93 37.43 27.47 68.60 1.88 39.32 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 5 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.24 -8.39 6.54 99.48 0.65 -7.74 16 7 C -0.52 -26.03 9.69 25.60 0.25 -25.78 16 8 H 0.03 1.66 8.06 -2.91 -0.02 1.64 16 9 C 0.21 8.34 4.08 85.63 0.35 8.69 16 10 N -0.58 -22.94 2.44 -830.49 -2.03 -24.97 16 11 C 0.17 6.03 5.76 85.63 0.49 6.53 16 12 C 0.10 3.76 6.36 42.55 0.27 4.03 16 13 C -0.14 -5.05 9.57 22.36 0.21 -4.83 16 14 C -0.09 -2.82 10.18 22.47 0.23 -2.59 16 15 C -0.17 -5.06 10.11 22.36 0.23 -4.84 16 16 C 0.07 2.40 11.18 84.67 0.95 3.35 16 17 N -0.50 -20.16 10.27 -183.88 -1.89 -22.05 16 18 C 0.53 22.13 7.69 87.66 0.67 22.80 16 19 O -0.55 -25.54 15.44 -3.05 -0.05 -25.59 16 20 C -0.13 -4.67 3.37 71.24 0.24 -4.43 16 21 S -0.08 -2.80 21.06 -56.49 -1.19 -3.99 16 22 C -0.11 -3.37 6.11 22.62 0.14 -3.24 16 23 C -0.15 -4.61 9.36 22.41 0.21 -4.40 16 24 C -0.11 -2.62 10.04 22.25 0.22 -2.40 16 25 C -0.13 -2.50 10.04 22.30 0.22 -2.27 16 26 C -0.10 -1.99 10.04 22.25 0.22 -1.77 16 27 C -0.11 -2.91 9.79 22.41 0.22 -2.69 16 28 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.05 1.78 5.50 -2.39 -0.01 1.77 16 30 H 0.06 2.04 7.32 -2.39 -0.02 2.02 16 31 H 0.09 3.16 7.42 -2.39 -0.02 3.15 16 32 H 0.12 3.38 7.79 -2.39 -0.02 3.37 16 33 H 0.14 4.63 8.06 -2.91 -0.02 4.60 16 34 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 35 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 36 H 0.17 4.70 8.06 -2.91 -0.02 4.68 16 37 H 0.13 4.15 7.00 -2.39 -0.02 4.13 16 38 H 0.11 4.45 7.62 -2.39 -0.02 4.43 16 39 H 0.12 3.61 5.88 -2.91 -0.02 3.59 16 40 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 41 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 42 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 43 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -70.29 379.61 3.59 -66.71 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 0.96 Total: 35.67 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 5.59 Total: -12.06 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -3.62 Total: -100.05 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 1.88 Total: 39.32 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -1.19 Total: -3.99 kcal Total: -70.29 3.59 -66.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069770251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.244 kcal (2) G-P(sol) polarization free energy of solvation -70.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds