Wall clock time and date at job start Tue Mar 31 2020 05:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00387 * 2 1 4 4 C 1.52995 * 109.47617 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46824 * 64.99777 * 4 3 2 6 6 C 1.46499 * 119.99936 * 85.00335 * 5 4 3 7 7 C 1.50704 * 109.46882 * 84.99554 * 6 5 4 8 8 H 1.07992 * 120.00253 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99387 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00317 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99593 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47347 * 59.99966 * 11 9 7 13 13 H 1.48498 * 109.47065 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47381 * 299.99760 * 11 9 7 15 15 S 1.65597 * 120.00079 * 264.72374 * 5 4 3 16 16 O 1.42095 * 106.40469 * 203.54076 * 15 5 4 17 17 O 1.42098 * 106.40441 * 336.46418 * 15 5 4 18 18 C 1.76207 * 107.21624 * 90.00391 * 15 5 4 19 19 C 1.38361 * 119.84883 * 269.72732 * 18 15 5 20 20 C 1.37958 * 120.13967 * 179.72487 * 19 18 15 21 21 C 1.39583 * 119.85523 * 0.54925 * 20 19 18 22 22 C 1.47844 * 120.14445 * 179.70896 * 21 20 19 23 23 N 1.34770 * 120.00092 * 0.02562 * 22 21 20 24 24 O 1.21552 * 119.99474 * 180.02562 * 22 21 20 25 25 C 1.39577 * 119.70703 * 359.72181 * 21 20 19 26 26 C 1.37958 * 119.85497 * 0.02562 * 25 21 20 27 27 H 1.08989 * 109.46947 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46604 * 300.00035 * 1 2 3 29 29 H 1.08996 * 109.46789 * 59.99787 * 1 2 3 30 30 H 1.09005 * 109.46916 * 59.99866 * 3 2 1 31 31 H 1.08999 * 109.46972 * 300.00402 * 3 2 1 32 32 H 1.08999 * 109.46886 * 305.00420 * 4 3 2 33 33 H 1.08999 * 109.47559 * 184.99651 * 4 3 2 34 34 H 1.08991 * 109.47463 * 204.99792 * 6 5 4 35 35 H 1.09000 * 109.46878 * 325.00020 * 6 5 4 36 36 H 0.97005 * 120.00079 * 179.97438 * 10 9 7 37 37 H 1.07999 * 119.93436 * 359.97438 * 19 18 15 38 38 H 1.07999 * 120.07536 * 180.24822 * 20 19 18 39 39 H 0.96999 * 120.00483 * 0.02562 * 23 22 21 40 40 H 0.97002 * 119.99601 * 180.02562 * 23 22 21 41 41 H 1.08003 * 120.07492 * 179.97438 * 25 21 20 42 42 H 1.08000 * 119.92670 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1808 1.3890 -2.4462 7 6 5.5682 1.9769 -2.4180 8 1 6.2308 1.7579 -1.5939 9 6 5.9913 2.7945 -3.4445 10 7 5.1844 3.0607 -4.4484 11 14 7.7111 3.5227 -3.4101 12 1 8.7125 2.4265 -3.3885 13 1 7.9186 4.3596 -4.6191 14 1 7.8693 4.3616 -2.1949 15 16 4.2479 -1.0678 -1.3173 16 8 5.1480 -1.2821 -2.3957 17 8 4.5181 -1.4825 0.0147 18 6 2.7286 -1.8322 -1.7780 19 6 1.8349 -2.2322 -0.8004 20 6 0.6411 -2.8261 -1.1545 21 6 0.3409 -3.0335 -2.5018 22 6 -0.9338 -3.6752 -2.8882 23 7 -1.8090 -4.0609 -1.9388 24 8 -1.1922 -3.8549 -4.0623 25 6 1.2494 -2.6326 -3.4826 26 6 2.4374 -2.0351 -3.1152 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.8515 0.5682 0.8409 33 1 3.9786 2.1765 0.0889 34 1 4.0654 0.7728 -3.3378 35 1 3.4456 2.1934 -2.4627 36 1 5.4820 3.6362 -5.1704 37 1 2.0704 -2.0756 0.2418 38 1 -0.0576 -3.1344 -0.3908 39 1 -1.6030 -3.9172 -1.0019 40 1 -2.6451 -4.4823 -2.1924 41 1 1.0234 -2.7906 -4.5268 42 1 3.1415 -1.7248 -3.8731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069842038.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:01 Heat of formation + Delta-G solvation = -118.206641 kcal Electronic energy + Delta-G solvation = -29151.602493 eV Core-core repulsion = 25031.456519 eV Total energy + Delta-G solvation = -4120.145974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.113 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.23128 -38.38200 -37.86964 -36.59732 -35.54847 -35.16012 -34.16080 -32.58343 -31.24626 -31.01846 -29.57128 -26.81438 -26.01942 -24.58914 -23.17996 -22.64052 -21.70809 -20.85543 -18.84379 -18.22899 -17.44608 -17.11437 -16.77113 -16.50955 -16.17066 -15.73046 -15.39787 -15.26570 -15.00181 -14.84924 -14.68288 -14.30701 -14.20426 -13.58124 -13.38973 -12.95762 -12.71093 -12.70202 -12.49979 -12.03020 -11.85477 -11.61721 -11.46165 -11.43535 -11.17115 -11.04956 -11.01786 -10.68425 -10.62940 -10.49228 -10.21931 -10.04421 -10.01664 -9.81411 -9.63460 -9.28593 -8.91118 -8.46194 -8.12263 -6.08381 -4.12914 0.40201 1.07806 1.35351 2.56489 3.18320 3.32857 3.37187 3.41329 3.52221 3.73174 3.96423 4.38632 4.45315 4.56309 4.57420 4.84576 5.01310 5.19990 5.25787 5.29692 5.35342 5.41430 5.47366 5.51944 5.53621 5.60609 5.61857 5.81464 5.97771 6.02830 6.14917 6.23177 6.27525 6.44266 6.45232 6.79879 6.99071 7.14225 7.20785 7.35257 7.54855 7.88580 7.93331 8.16469 8.89341 9.52660 10.99988 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.003866 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.416905 B = 7240.131562 C = 7709.565976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.389 6.389 3 C 0.035 3.965 4 C 0.125 3.875 5 N -0.976 5.976 6 C 0.256 3.744 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.064 3.936 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.276 1.276 15 S 2.688 3.312 16 O -0.943 6.943 17 O -0.973 6.973 18 C -0.640 4.640 19 C 0.016 3.984 20 C -0.128 4.128 21 C -0.096 4.096 22 C 0.562 3.438 23 N -0.851 5.851 24 O -0.536 6.536 25 C -0.090 4.090 26 C -0.022 4.022 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.039 0.961 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.149 0.851 38 H 0.127 0.873 39 H 0.401 0.599 40 H 0.405 0.595 41 H 0.140 0.860 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.268 -8.786 10.439 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.308 6.308 3 C -0.043 4.043 4 C -0.002 4.002 5 N -0.815 5.815 6 C 0.135 3.865 7 C -0.571 4.571 8 H 0.080 0.920 9 C -0.139 4.139 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.202 1.202 15 S 2.776 3.224 16 O -0.934 6.934 17 O -0.964 6.964 18 C -0.725 4.725 19 C -0.003 4.003 20 C -0.147 4.147 21 C -0.100 4.100 22 C 0.348 3.652 23 N -0.415 5.415 24 O -0.413 6.413 25 C -0.109 4.109 26 C -0.041 4.041 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.166 0.834 38 H 0.145 0.855 39 H 0.231 0.769 40 H 0.236 0.764 41 H 0.158 0.842 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.414 -9.305 9.604 18.940 hybrid contribution -0.504 0.691 0.054 0.857 sum -13.918 -8.614 9.657 19.005 Atomic orbital electron populations 1.22714 0.81918 1.02253 0.99885 1.87923 1.19300 1.28248 1.95368 1.23251 0.95583 0.84713 1.00745 1.21306 0.90709 1.01555 0.86650 1.57365 1.82146 1.23528 1.18436 1.19101 0.97086 0.90329 0.80018 1.21444 0.99127 1.29277 1.07208 0.92040 1.24916 0.97641 0.96230 0.95063 1.69906 1.36059 1.37289 1.10100 0.86584 0.84589 0.79100 0.77347 1.19918 1.21224 1.20191 1.02159 0.73830 0.72972 0.73434 1.93610 1.59466 1.84730 1.55562 1.93489 1.83777 1.81932 1.37180 1.31600 1.25047 1.14906 1.00925 1.20776 0.90906 0.89162 0.99465 1.21242 0.97976 1.01076 0.94405 1.20048 0.94651 1.00686 0.94580 1.18388 0.83877 0.77544 0.85378 1.43757 1.22813 1.64873 1.10102 1.90828 1.77273 1.55197 1.17968 1.21305 0.92844 0.96952 0.99836 1.21039 0.95885 0.92470 0.94724 0.90159 0.94275 0.94191 0.92628 0.92256 0.89301 0.87746 0.94274 0.94619 0.92594 0.83379 0.85529 0.76885 0.76443 0.84194 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.29 101.05 1.04 1.31 16 2 O -0.39 -4.89 5.95 -35.23 -0.21 -5.10 16 3 C 0.04 0.46 6.28 37.16 0.23 0.69 16 4 C 0.12 1.96 6.07 -4.04 -0.02 1.93 16 5 N -0.98 -19.07 2.71 -115.66 -0.31 -19.39 16 6 C 0.26 6.07 5.10 -5.19 -0.03 6.04 16 7 C -0.53 -14.24 9.38 -34.44 -0.32 -14.56 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16 11 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 S 2.69 52.44 5.52 -107.50 -0.59 51.85 16 16 O -0.94 -21.94 16.23 -57.17 -0.93 -22.87 16 17 O -0.97 -19.33 15.81 -57.17 -0.90 -20.23 16 18 C -0.64 -10.32 5.46 -39.49 -0.22 -10.54 16 19 C 0.02 0.21 5.97 -39.64 -0.24 -0.03 16 20 C -0.13 -1.34 7.55 -39.18 -0.30 -1.64 16 21 C -0.10 -1.19 5.87 -104.97 -0.62 -1.81 16 22 C 0.56 6.62 8.05 -12.33 -0.10 6.52 16 23 N -0.85 -5.82 8.82 30.53 0.27 -5.55 16 24 O -0.54 -8.39 17.18 5.32 0.09 -8.30 16 25 C -0.09 -1.28 9.60 -39.18 -0.38 -1.66 16 26 C -0.02 -0.35 9.50 -39.64 -0.38 -0.73 16 27 H 0.08 0.62 5.77 -51.93 -0.30 0.32 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 32 H 0.09 1.33 6.91 -51.93 -0.36 0.97 16 33 H 0.10 1.61 8.11 -51.93 -0.42 1.19 16 34 H 0.04 0.99 7.61 -51.93 -0.40 0.60 16 35 H 0.04 0.85 8.05 -51.93 -0.42 0.43 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.15 1.86 6.73 -52.49 -0.35 1.51 16 38 H 0.13 0.79 6.17 -52.49 -0.32 0.47 16 39 H 0.40 1.61 6.86 -40.82 -0.28 1.33 16 40 H 0.40 2.16 8.93 -40.82 -0.36 1.80 16 41 H 0.14 1.92 7.65 -52.48 -0.40 1.52 16 42 H 0.15 2.38 7.60 -52.49 -0.40 1.98 16 LS Contribution 359.98 15.07 5.42 5.42 Total: -1.00 -35.07 359.98 -8.11 -43.18 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.25 Total: 2.17 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -1.41 Total: -12.80 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.69 Total: -49.56 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -1.95 Total: -56.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 52.44 SS G_CDS: -0.59 Total: 51.85 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.07 -8.11 -43.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069842038.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.022 kcal (2) G-P(sol) polarization free energy of solvation -35.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds