Wall clock time and date at job start Tue Mar 31 2020 06:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42898 * 109.46604 * 2 1 4 4 C 1.35976 * 116.99568 * 180.02562 * 3 2 1 5 5 C 1.38729 * 119.98228 * 0.22815 * 4 3 2 6 6 C 1.38084 * 120.01411 * 180.23287 * 5 4 3 7 7 C 1.38860 * 119.98571 * 359.51778 * 6 5 4 8 8 N 1.40021 * 120.02146 * 180.27219 * 7 6 5 9 9 C 1.46502 * 120.00591 * 172.71842 * 8 7 6 10 10 C 1.50700 * 109.47404 * 95.66164 * 9 8 7 11 11 H 1.07997 * 119.99606 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00171 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99841 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99863 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47235 * 89.99850 * 14 12 10 16 16 H 1.48502 * 109.46649 * 209.99402 * 14 12 10 17 17 H 1.48495 * 109.47003 * 329.99348 * 14 12 10 18 18 C 1.34783 * 119.99747 * 352.71867 * 8 7 6 19 19 O 1.21711 * 120.00090 * 5.60455 * 18 8 7 20 20 C 1.46629 * 119.99818 * 185.59933 * 18 8 7 21 21 C 1.36560 * 125.98701 * 175.30629 * 20 18 8 22 22 C 1.40360 * 106.70561 * 180.02562 * 21 20 18 23 23 C 1.35129 * 107.11807 * 359.97438 * 22 21 20 24 24 C 1.50707 * 125.61441 * 180.02562 * 23 22 21 25 25 C 1.52995 * 109.47109 * 90.00042 * 24 23 22 26 26 O 1.33941 * 108.76983 * 359.73424 * 23 22 21 27 27 C 1.38868 * 119.96508 * 0.25665 * 7 6 5 28 28 C 1.38082 * 119.98315 * 359.97438 * 27 7 6 29 29 H 1.08996 * 109.46766 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46749 * 299.99476 * 1 2 3 31 31 H 1.08995 * 109.47190 * 59.99491 * 1 2 3 32 32 H 1.09003 * 109.46749 * 240.00524 * 2 1 3 33 33 H 1.08995 * 109.47190 * 120.00509 * 2 1 3 34 34 H 1.08000 * 119.99398 * 0.02850 * 5 4 3 35 35 H 1.08000 * 120.00848 * 179.79680 * 6 5 4 36 36 H 1.08998 * 109.47244 * 215.66629 * 9 8 7 37 37 H 1.09002 * 109.46853 * 335.66355 * 9 8 7 38 38 H 0.97004 * 120.00081 * 180.02562 * 13 12 10 39 39 H 1.07999 * 126.64938 * 359.96190 * 21 20 18 40 40 H 1.08003 * 126.44168 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.46658 * 210.00415 * 24 23 22 42 42 H 1.09008 * 109.46839 * 329.99609 * 24 23 22 43 43 H 1.09002 * 109.47089 * 299.99382 * 25 24 23 44 44 H 1.08996 * 109.47391 * 59.99790 * 25 24 23 45 45 H 1.09003 * 109.46809 * 180.02562 * 25 24 23 46 46 H 1.08008 * 120.01209 * 180.02562 * 27 7 6 47 47 H 1.08000 * 119.99616 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5255 -0.0005 5 6 4.1991 0.4251 -0.0058 6 6 5.5681 0.6052 -0.0015 7 6 6.0993 1.8882 -0.0020 8 7 7.4874 2.0718 -0.0034 9 6 8.0486 3.4154 -0.1647 10 6 8.3484 4.0007 1.1912 11 1 8.1420 3.4289 2.0838 12 6 8.8862 5.2663 1.2922 13 7 9.1380 5.9624 0.2052 14 14 9.2585 5.9914 2.9729 15 1 10.6463 5.6398 3.3674 16 1 9.1193 7.4688 2.9163 17 1 8.3059 5.4423 3.9709 18 6 8.3074 1.0122 0.1437 19 8 7.8468 -0.1140 0.1752 20 6 9.7543 1.2163 0.2655 21 6 10.6839 0.2458 0.5079 22 6 11.9334 0.8842 0.5449 23 6 11.7146 2.1995 0.3256 24 6 12.7749 3.2695 0.2777 25 6 13.2831 3.4199 -1.1576 26 8 10.4010 2.3948 0.1516 27 6 5.2530 2.9893 -0.0014 28 6 3.8842 2.8075 -0.0009 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.7859 -0.5728 -0.0100 35 1 6.2257 -0.2515 -0.0024 36 1 8.9682 3.3576 -0.7470 37 1 7.3295 4.0496 -0.6833 38 1 9.5168 6.8526 0.2762 39 1 10.4944 -0.8085 0.6457 40 1 12.8899 0.4128 0.7163 41 1 12.3515 4.2158 0.6143 42 1 13.6030 2.9898 0.9290 43 1 13.7066 2.4735 -1.4941 44 1 12.4551 3.6995 -1.8088 45 1 14.0503 4.1935 -1.1921 46 1 5.6653 3.9875 -0.0022 47 1 3.2259 3.6637 -0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069846533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:51 Heat of formation + Delta-G solvation = -16.653372 kcal Electronic energy + Delta-G solvation = -30219.964691 eV Core-core repulsion = 26142.725972 eV Total energy + Delta-G solvation = -4077.238718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.15011 -40.21931 -39.14983 -36.95273 -35.13137 -33.83193 -32.66780 -32.31237 -31.73649 -30.46371 -29.33430 -27.97511 -27.06898 -24.26155 -23.97852 -23.05680 -22.50907 -21.52334 -20.95106 -20.20770 -19.38351 -17.93982 -17.13356 -16.79738 -16.51667 -15.96400 -15.83905 -15.52291 -14.90968 -14.55846 -14.28602 -14.20129 -14.11621 -13.66464 -13.40798 -13.19786 -13.08189 -12.82464 -12.62809 -12.58258 -12.45847 -12.42838 -12.18635 -12.03522 -11.84935 -11.54651 -11.32919 -11.25834 -11.10891 -10.78677 -10.75920 -10.64986 -10.63944 -10.25204 -9.95624 -9.48942 -8.99923 -8.92250 -8.58776 -8.50695 -8.03542 -6.96126 -6.20553 -4.26532 1.42749 1.84728 2.06485 2.80247 3.17762 3.19501 3.27077 3.32247 3.42506 3.62778 3.77742 4.29519 4.39235 4.86876 4.88191 4.95497 5.12484 5.14617 5.17928 5.29549 5.35224 5.37598 5.44900 5.46550 5.49558 5.68321 5.70636 5.75024 5.90484 5.94108 5.98339 6.04531 6.08818 6.12614 6.23309 6.28984 6.32782 6.42622 6.50432 6.78756 6.81125 6.88162 6.90989 7.06885 7.18292 7.51443 7.60729 7.70699 7.83715 7.95272 8.01478 8.60568 8.77822 9.38623 10.86111 Molecular weight = 343.16amu Principal moments of inertia in cm(-1) A = 0.012586 B = 0.003446 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.228240 B = 8122.551236 C = 9708.464555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.322 6.322 4 C 0.089 3.911 5 C -0.191 4.191 6 C -0.139 4.139 7 C 0.134 3.866 8 N -0.523 5.523 9 C 0.225 3.775 10 C -0.526 4.526 11 H 0.059 0.941 12 C 0.073 3.927 13 N -0.887 5.887 14 Si 0.890 3.110 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.600 3.400 19 O -0.533 6.533 20 C -0.061 4.061 21 C -0.136 4.136 22 C -0.238 4.238 23 C 0.023 3.977 24 C -0.049 4.049 25 C -0.146 4.146 26 O -0.101 6.101 27 C -0.103 4.103 28 C -0.132 4.132 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.122 0.878 35 H 0.182 0.818 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.265 0.735 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.147 0.853 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.062 -8.074 -2.077 8.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.237 6.237 4 C 0.044 3.956 5 C -0.210 4.210 6 C -0.158 4.158 7 C 0.038 3.962 8 N -0.241 5.241 9 C 0.107 3.893 10 C -0.565 4.565 11 H 0.077 0.923 12 C -0.130 4.130 13 N -0.526 5.526 14 Si 0.718 3.282 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C 0.392 3.608 19 O -0.416 6.416 20 C -0.114 4.114 21 C -0.157 4.157 22 C -0.257 4.257 23 C -0.031 4.031 24 C -0.086 4.086 25 C -0.203 4.203 26 O 0.007 5.993 27 C -0.123 4.123 28 C -0.151 4.151 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.140 0.860 35 H 0.198 0.802 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.164 0.836 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.472 -7.972 -2.205 8.632 hybrid contribution 0.423 0.268 1.117 1.224 sum -2.048 -7.704 -1.088 8.045 Atomic orbital electron populations 1.21761 0.93243 1.02456 1.03311 1.22667 0.95352 0.82784 1.01190 1.86018 1.19671 1.28411 1.89593 1.18964 0.81706 0.94358 1.00533 1.21122 0.94011 0.97354 1.08556 1.22554 0.95264 0.98611 0.99371 1.17930 0.82736 0.93958 1.01531 1.45881 1.03496 1.10710 1.63991 1.19925 0.95141 0.75427 0.98806 1.21245 1.42775 1.00705 0.91750 0.92277 1.24787 0.95035 0.96503 0.96697 1.69919 1.43363 1.11868 1.27408 0.86602 0.78953 0.78309 0.84360 1.20452 1.20971 1.19766 1.16781 0.83376 0.83964 0.76701 1.90394 1.73712 1.24028 1.53489 1.21671 0.92788 0.84259 1.12697 1.21729 0.91282 0.99878 1.02799 1.21388 0.98839 0.93147 1.12303 1.22890 0.83729 0.95905 1.00610 1.20129 0.93206 0.96636 0.98660 1.21738 1.01438 1.01614 0.95531 1.84699 1.17244 1.30923 1.66447 1.20963 0.91629 0.99214 1.00470 1.20143 0.94377 0.94498 1.06097 0.90728 0.91687 0.91689 0.92371 0.92360 0.86041 0.80158 0.92443 0.93277 0.92548 0.83071 0.83624 0.89119 0.89383 0.92635 0.91802 0.91922 0.83575 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.63 5.46 37.16 0.20 0.83 16 3 O -0.32 -4.90 10.14 -19.67 -0.20 -5.10 16 4 C 0.09 1.52 6.69 -39.22 -0.26 1.26 16 5 C -0.19 -3.23 9.03 -39.46 -0.36 -3.59 16 6 C -0.14 -2.69 9.05 -39.41 -0.36 -3.05 16 7 C 0.13 2.80 6.49 -83.65 -0.54 2.26 16 8 N -0.52 -11.69 2.70 -116.17 -0.31 -12.01 16 9 C 0.23 5.39 4.21 -5.19 -0.02 5.37 16 10 C -0.53 -13.53 8.05 -34.44 -0.28 -13.81 16 11 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 12 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 13 N -0.89 -23.39 13.29 55.43 0.74 -22.65 16 14 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 C 0.60 13.16 7.54 -12.87 -0.10 13.07 16 19 O -0.53 -11.60 13.27 5.18 0.07 -11.53 16 20 C -0.06 -1.27 6.68 -36.80 -0.25 -1.51 16 21 C -0.14 -2.41 10.63 -39.39 -0.42 -2.83 16 22 C -0.24 -3.79 10.77 -39.89 -0.43 -4.22 16 23 C 0.02 0.41 6.57 -35.41 -0.23 0.18 16 24 C -0.05 -0.71 6.47 -27.88 -0.18 -0.89 16 25 C -0.15 -1.84 9.89 37.16 0.37 -1.47 16 26 O -0.10 -2.15 6.44 4.97 0.03 -2.12 16 27 C -0.10 -2.02 9.15 -39.41 -0.36 -2.38 16 28 C -0.13 -2.33 9.98 -39.46 -0.39 -2.72 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.61 7.65 -51.93 -0.40 0.22 16 33 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 34 H 0.12 1.72 6.29 -52.49 -0.33 1.39 16 35 H 0.18 3.64 4.52 -56.26 -0.25 3.38 16 36 H 0.06 1.45 5.69 -51.93 -0.30 1.15 16 37 H 0.05 1.21 6.21 -51.93 -0.32 0.89 16 38 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 39 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16 40 H 0.15 1.83 8.06 -52.48 -0.42 1.41 16 41 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 42 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.15 2.99 6.23 -52.48 -0.33 2.67 16 47 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 388.77 15.07 5.86 5.86 Total: -1.00 -28.70 388.77 -8.68 -37.38 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.52 Total: 7.52 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -3.32 Total: -12.66 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.42 Total: -34.66 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.10 Total: -18.75 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.70 -8.68 -37.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069846533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.729 kcal (2) G-P(sol) polarization free energy of solvation -28.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds