Wall clock time and date at job start Tue Mar 31 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42898 * 109.46604 * 2 1 4 4 C 1.35976 * 116.99568 * 180.02562 * 3 2 1 5 5 C 1.38729 * 119.98228 * 0.22815 * 4 3 2 6 6 C 1.38084 * 120.01411 * 180.23287 * 5 4 3 7 7 C 1.38860 * 119.98571 * 359.51778 * 6 5 4 8 8 N 1.40021 * 120.02146 * 180.27219 * 7 6 5 9 9 C 1.46502 * 120.00591 * 172.71842 * 8 7 6 10 10 C 1.50700 * 109.47404 * 95.66164 * 9 8 7 11 11 H 1.07997 * 119.99606 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00171 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99841 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99863 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47235 * 89.99850 * 14 12 10 16 16 H 1.48502 * 109.46649 * 209.99402 * 14 12 10 17 17 H 1.48495 * 109.47003 * 329.99348 * 14 12 10 18 18 C 1.34783 * 119.99747 * 352.71867 * 8 7 6 19 19 O 1.21711 * 120.00090 * 5.60455 * 18 8 7 20 20 C 1.46629 * 119.99818 * 185.59933 * 18 8 7 21 21 C 1.36560 * 125.98701 * 175.30629 * 20 18 8 22 22 C 1.40360 * 106.70561 * 180.02562 * 21 20 18 23 23 C 1.35129 * 107.11807 * 359.97438 * 22 21 20 24 24 C 1.50707 * 125.61441 * 180.02562 * 23 22 21 25 25 C 1.52995 * 109.47109 * 90.00042 * 24 23 22 26 26 O 1.33941 * 108.76983 * 359.73424 * 23 22 21 27 27 C 1.38868 * 119.96508 * 0.25665 * 7 6 5 28 28 C 1.38082 * 119.98315 * 359.97438 * 27 7 6 29 29 H 1.08996 * 109.46766 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46749 * 299.99476 * 1 2 3 31 31 H 1.08995 * 109.47190 * 59.99491 * 1 2 3 32 32 H 1.09003 * 109.46749 * 240.00524 * 2 1 3 33 33 H 1.08995 * 109.47190 * 120.00509 * 2 1 3 34 34 H 1.08000 * 119.99398 * 0.02850 * 5 4 3 35 35 H 1.08000 * 120.00848 * 179.79680 * 6 5 4 36 36 H 1.08998 * 109.47244 * 215.66629 * 9 8 7 37 37 H 1.09002 * 109.46853 * 335.66355 * 9 8 7 38 38 H 0.97004 * 120.00081 * 180.02562 * 13 12 10 39 39 H 1.07999 * 126.64938 * 359.96190 * 21 20 18 40 40 H 1.08003 * 126.44168 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.46658 * 210.00415 * 24 23 22 42 42 H 1.09008 * 109.46839 * 329.99609 * 24 23 22 43 43 H 1.09002 * 109.47089 * 299.99382 * 25 24 23 44 44 H 1.08996 * 109.47391 * 59.99790 * 25 24 23 45 45 H 1.09003 * 109.46809 * 180.02562 * 25 24 23 46 46 H 1.08008 * 120.01209 * 180.02562 * 27 7 6 47 47 H 1.08000 * 119.99616 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5255 -0.0005 5 6 4.1991 0.4251 -0.0058 6 6 5.5681 0.6052 -0.0015 7 6 6.0993 1.8882 -0.0020 8 7 7.4874 2.0718 -0.0034 9 6 8.0486 3.4154 -0.1647 10 6 8.3484 4.0007 1.1912 11 1 8.1420 3.4289 2.0838 12 6 8.8862 5.2663 1.2922 13 7 9.1380 5.9624 0.2052 14 14 9.2585 5.9914 2.9729 15 1 10.6463 5.6398 3.3674 16 1 9.1193 7.4688 2.9163 17 1 8.3059 5.4423 3.9709 18 6 8.3074 1.0122 0.1437 19 8 7.8468 -0.1140 0.1752 20 6 9.7543 1.2163 0.2655 21 6 10.6839 0.2458 0.5079 22 6 11.9334 0.8842 0.5449 23 6 11.7146 2.1995 0.3256 24 6 12.7749 3.2695 0.2777 25 6 13.2831 3.4199 -1.1576 26 8 10.4010 2.3948 0.1516 27 6 5.2530 2.9893 -0.0014 28 6 3.8842 2.8075 -0.0009 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.7859 -0.5728 -0.0100 35 1 6.2257 -0.2515 -0.0024 36 1 8.9682 3.3576 -0.7470 37 1 7.3295 4.0496 -0.6833 38 1 9.5168 6.8526 0.2762 39 1 10.4944 -0.8085 0.6457 40 1 12.8899 0.4128 0.7163 41 1 12.3515 4.2158 0.6143 42 1 13.6030 2.9898 0.9290 43 1 13.7066 2.4735 -1.4941 44 1 12.4551 3.6995 -1.8088 45 1 14.0503 4.1935 -1.1921 46 1 5.6653 3.9875 -0.0022 47 1 3.2259 3.6637 -0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069846533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:50 Heat of formation + Delta-G solvation = -30.368550 kcal Electronic energy + Delta-G solvation = -30220.559425 eV Core-core repulsion = 26142.725972 eV Total energy + Delta-G solvation = -4077.833453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.59375 -41.73740 -40.51619 -38.40409 -36.76546 -35.04275 -34.57993 -33.71048 -32.75209 -31.86032 -30.73185 -29.61901 -28.66478 -25.66629 -25.40957 -24.40316 -23.96307 -22.84679 -22.31134 -21.59933 -20.88336 -19.22240 -18.85915 -18.52411 -18.19585 -17.29446 -17.01731 -16.97098 -16.49717 -16.13449 -15.89864 -15.66510 -15.37377 -15.07980 -14.70473 -14.49047 -14.40248 -14.26351 -14.01067 -13.96527 -13.82865 -13.73881 -13.34346 -13.20770 -13.15347 -13.06408 -12.87092 -12.63881 -12.47447 -12.41534 -12.17108 -12.04983 -11.94480 -11.86386 -11.59387 -10.88072 -10.65539 -10.57475 -10.50226 -9.97630 -9.44354 -8.52197 -8.16983 -6.32177 -0.08649 0.37954 0.59828 1.35849 1.38874 1.45623 1.48419 1.72619 2.07565 2.20056 2.32204 2.40087 2.87660 3.10743 3.44709 3.81612 3.92556 3.98408 4.06945 4.09389 4.18762 4.26213 4.28870 4.37764 4.40410 4.46510 4.51099 4.54934 4.62974 4.71038 4.87031 4.88173 4.93316 4.97612 5.02090 5.06043 5.10820 5.15678 5.22259 5.24732 5.32865 5.34358 5.42770 5.58071 5.60974 5.65843 5.95364 6.01724 6.17714 6.31320 6.51611 6.72584 6.98308 7.35406 8.86419 Molecular weight = 343.16amu Principal moments of inertia in cm(-1) A = 0.012586 B = 0.003446 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.228240 B = 8122.551236 C = 9708.464555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 O -0.329 6.329 4 C 0.099 3.901 5 C -0.183 4.183 6 C -0.146 4.146 7 C 0.102 3.898 8 N -0.531 5.531 9 C 0.246 3.754 10 C -0.529 4.529 11 H 0.038 0.962 12 C 0.039 3.961 13 N -0.909 5.909 14 Si 0.943 3.057 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.280 1.280 18 C 0.591 3.409 19 O -0.542 6.542 20 C -0.107 4.107 21 C -0.121 4.121 22 C -0.223 4.223 23 C 0.009 3.991 24 C -0.049 4.049 25 C -0.140 4.140 26 O -0.135 6.135 27 C -0.114 4.114 28 C -0.133 4.133 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.154 0.846 35 H 0.175 0.825 36 H 0.043 0.957 37 H 0.034 0.966 38 H 0.268 0.732 39 H 0.171 0.829 40 H 0.189 0.811 41 H 0.063 0.937 42 H 0.125 0.875 43 H 0.073 0.927 44 H 0.034 0.966 45 H 0.085 0.915 46 H 0.129 0.871 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 -9.444 -1.362 9.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 O -0.244 6.244 4 C 0.053 3.947 5 C -0.202 4.202 6 C -0.165 4.165 7 C 0.007 3.993 8 N -0.250 5.250 9 C 0.127 3.873 10 C -0.567 4.567 11 H 0.057 0.943 12 C -0.162 4.162 13 N -0.548 5.548 14 Si 0.768 3.232 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.205 1.205 18 C 0.384 3.616 19 O -0.426 6.426 20 C -0.159 4.159 21 C -0.142 4.142 22 C -0.241 4.241 23 C -0.045 4.045 24 C -0.086 4.086 25 C -0.197 4.197 26 O -0.029 6.029 27 C -0.134 4.134 28 C -0.152 4.152 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.171 0.829 35 H 0.191 0.809 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.188 0.812 40 H 0.206 0.794 41 H 0.082 0.918 42 H 0.144 0.856 43 H 0.092 0.908 44 H 0.054 0.946 45 H 0.104 0.896 46 H 0.147 0.853 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.162 -9.357 -1.495 9.719 hybrid contribution 0.252 0.617 0.872 1.097 sum -1.910 -8.739 -0.623 8.968 Atomic orbital electron populations 1.21793 0.91104 1.04194 1.03211 1.23078 0.97103 0.80982 1.02122 1.86037 1.18132 1.31138 1.89065 1.18986 0.82822 0.93931 0.98940 1.21379 0.92825 0.98969 1.06980 1.22520 0.96405 0.97563 1.00022 1.18245 0.82324 0.95133 1.03561 1.45821 1.04338 1.10101 1.64692 1.19482 0.93980 0.76223 0.97645 1.21198 1.43048 1.00890 0.91586 0.94321 1.25358 0.94720 0.96618 0.99545 1.69993 1.43734 1.12175 1.28888 0.85789 0.78891 0.77868 0.80616 1.19439 1.20091 1.20479 1.17064 0.84170 0.83848 0.76520 1.90365 1.74197 1.23839 1.54187 1.21746 0.92733 0.85225 1.16166 1.22116 0.91383 1.00288 1.00381 1.21805 0.99719 0.92099 1.10517 1.23730 0.83008 0.97840 0.99899 1.20335 0.93206 0.94533 1.00530 1.21711 1.00958 1.03374 0.93692 1.84638 1.19069 1.31696 1.67485 1.20865 0.92653 0.98157 1.01746 1.20319 0.93627 0.95892 1.05363 0.88058 0.91873 0.91728 0.91278 0.91508 0.82895 0.80881 0.93981 0.94809 0.92236 0.81167 0.79380 0.91831 0.85648 0.90770 0.94644 0.89612 0.85341 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.28 71.99 0.74 -1.38 16 2 C 0.04 0.84 5.46 71.99 0.39 1.23 16 3 O -0.33 -9.38 10.14 -93.28 -0.95 -10.32 16 4 C 0.10 3.26 6.69 22.50 0.15 3.41 16 5 C -0.18 -5.99 9.03 22.35 0.20 -5.78 16 6 C -0.15 -5.77 9.05 22.38 0.20 -5.57 16 7 C 0.10 4.48 6.49 38.13 0.25 4.73 16 8 N -0.53 -25.27 2.70 -639.65 -1.73 -27.00 16 9 C 0.25 12.59 4.21 85.63 0.36 12.95 16 10 C -0.53 -28.55 8.05 25.60 0.21 -28.35 16 11 H 0.04 2.21 7.81 -2.91 -0.02 2.18 16 12 C 0.04 2.05 5.46 84.65 0.46 2.52 16 13 N -0.91 -49.38 13.29 21.45 0.28 -49.10 16 14 Si 0.94 42.28 29.54 68.60 2.03 44.31 16 15 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 16 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 C 0.59 27.22 7.54 86.43 0.65 27.87 16 19 O -0.54 -24.40 13.27 -4.38 -0.06 -24.45 16 20 C -0.11 -4.57 6.68 24.07 0.16 -4.41 16 21 C -0.12 -4.19 10.63 22.39 0.24 -3.96 16 22 C -0.22 -6.60 10.77 22.07 0.24 -6.37 16 23 C 0.01 0.31 6.57 24.97 0.16 0.48 16 24 C -0.05 -1.36 6.47 29.85 0.19 -1.17 16 25 C -0.14 -3.35 9.89 71.98 0.71 -2.63 16 26 O -0.13 -5.98 6.44 -5.13 -0.03 -6.01 16 27 C -0.11 -4.72 9.15 22.38 0.20 -4.52 16 28 C -0.13 -4.72 9.98 22.35 0.22 -4.50 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.25 7.65 -2.39 -0.02 1.24 16 33 H 0.07 1.24 7.67 -2.39 -0.02 1.23 16 34 H 0.15 3.95 6.29 -2.91 -0.02 3.93 16 35 H 0.17 7.16 4.52 -62.65 -0.28 6.87 16 36 H 0.04 2.29 5.69 -2.39 -0.01 2.28 16 37 H 0.03 1.80 6.21 -2.39 -0.01 1.79 16 38 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 39 H 0.17 5.10 8.06 -2.91 -0.02 5.08 16 40 H 0.19 3.86 8.06 -2.91 -0.02 3.84 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.13 2.51 8.14 -2.38 -0.02 2.49 16 43 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.13 5.69 6.23 -2.91 -0.02 5.67 16 47 H 0.15 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -65.13 388.77 6.01 -59.12 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.72 Total: 28.90 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 5.75 Total: -15.45 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -1.44 Total: -76.10 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -1.04 Total: -40.79 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -65.13 6.01 -59.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069846533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.751 kcal (2) G-P(sol) polarization free energy of solvation -65.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds