Wall clock time and date at job start Tue Mar 31 2020 05:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31365 * 1 3 3 Si 1.86809 * 119.99545 * 2 1 4 4 H 1.48501 * 109.46917 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47027 * 300.00380 * 3 2 1 6 6 H 1.48496 * 109.47129 * 60.00372 * 3 2 1 7 7 C 1.39040 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99933 * 179.97438 * 7 2 1 9 9 N 1.36869 * 120.00415 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00526 * 179.97438 * 9 7 2 11 11 O 1.21588 * 119.99935 * 0.02562 * 10 9 7 12 12 C 1.47741 * 120.00354 * 179.97438 * 10 9 7 13 13 C 1.39562 * 120.11869 * 180.02562 * 12 10 9 14 14 C 1.38575 * 119.77178 * 179.97438 * 13 12 10 15 15 N 1.39961 * 119.99658 * 179.72229 * 14 13 12 16 16 C 1.46763 * 124.34895 * 173.97224 * 15 14 13 17 17 C 1.54663 * 105.37911 * 162.85423 * 16 15 14 18 18 C 1.54629 * 101.68562 * 25.76679 * 17 16 15 19 19 C 1.34416 * 124.34518 * 354.27150 * 15 14 13 20 20 O 1.21284 * 124.94460 * 0.39156 * 19 15 14 21 21 C 1.39010 * 120.01007 * 359.97438 * 14 13 12 22 22 C 1.38226 * 120.23352 * 359.97438 * 21 14 13 23 23 C 1.50701 * 119.88494 * 179.97438 * 22 21 14 24 24 F 1.39903 * 109.46982 * 180.02562 * 23 22 21 25 25 F 1.39899 * 109.47372 * 300.00322 * 23 22 21 26 26 F 1.39900 * 109.46775 * 60.00862 * 23 22 21 27 27 C 1.38005 * 120.22897 * 0.02562 * 22 21 14 28 28 H 0.97001 * 119.99999 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99259 * 359.97438 * 9 7 2 30 30 H 1.08001 * 120.11859 * 359.95088 * 13 12 10 31 31 H 1.08993 * 110.24929 * 281.98161 * 16 15 14 32 32 H 1.08999 * 110.24574 * 43.98697 * 16 15 14 33 33 H 1.08998 * 111.19400 * 267.59263 * 17 16 15 34 34 H 1.08992 * 110.81780 * 143.77701 * 17 16 15 35 35 H 1.08997 * 110.48771 * 216.30971 * 18 17 16 36 36 H 1.09003 * 110.48378 * 93.66625 * 18 17 16 37 37 H 1.07995 * 119.88453 * 179.97438 * 21 14 13 38 38 H 1.08002 * 120.00096 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6179 0.0000 4 1 3.7076 1.3466 -0.0006 5 1 1.8887 2.3966 -1.2124 6 1 1.8888 2.3965 1.2125 7 6 2.0089 -1.2041 -0.0005 8 1 3.0889 -1.2040 -0.0010 9 7 1.3247 -2.3895 -0.0005 10 6 1.9985 -3.5566 -0.0016 11 8 3.2144 -3.5566 -0.0021 12 6 1.2599 -4.8362 -0.0010 13 6 1.9553 -6.0462 -0.0015 14 6 1.2553 -7.2421 -0.0005 15 7 1.9479 -8.4583 -0.0069 16 6 1.3113 -9.7745 0.1208 17 6 2.3674 -10.7907 -0.3731 18 6 3.6855 -10.0285 -0.1034 19 6 3.2821 -8.5706 -0.1250 20 8 4.0508 -7.6387 -0.2335 21 6 -0.1348 -7.2340 0.0017 22 6 -0.8239 -6.0358 0.0033 23 6 -2.3309 -6.0362 0.0050 24 9 -2.7975 -4.7173 0.0059 25 9 -2.7984 -6.6951 -1.1371 26 9 -2.7956 -6.6964 1.1475 27 6 -0.1365 -4.8391 0.0022 28 1 -0.4850 0.8401 0.0004 29 1 0.3546 -2.3895 0.0002 30 1 3.0353 -6.0506 -0.0032 31 1 1.0540 -9.9697 1.1618 32 1 0.4199 -9.8246 -0.5045 33 1 2.2474 -10.9982 -1.4364 34 1 2.3223 -11.7105 0.2098 35 1 4.4129 -10.2348 -0.8885 36 1 4.0892 -10.2983 0.8725 37 1 -0.6783 -8.1673 0.0021 38 1 -0.6787 -3.9050 0.0039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069873703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:31 Heat of formation + Delta-G solvation = -185.653049 kcal Electronic energy + Delta-G solvation = -29675.566141 eV Core-core repulsion = 24875.194780 eV Total energy + Delta-G solvation = -4800.371362 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.08026 -47.56658 -47.56471 -41.21517 -39.21935 -37.59510 -36.69476 -34.18257 -33.53214 -31.76852 -31.23562 -29.35124 -28.04203 -25.97464 -25.37727 -23.72712 -22.62349 -21.93691 -20.36852 -19.24683 -18.52452 -18.42329 -18.23496 -17.74930 -17.03291 -16.61532 -16.39322 -15.91653 -15.32516 -14.78711 -14.59257 -14.48124 -14.22784 -14.12947 -14.05384 -13.98017 -13.90385 -13.71915 -13.69281 -13.64385 -13.53648 -13.19105 -12.79649 -12.45406 -12.41572 -12.00200 -11.71509 -11.66509 -11.48601 -11.43078 -11.20266 -10.42156 -10.40520 -10.35521 -9.71219 -9.70566 -8.91334 -8.58273 -8.15327 -8.04805 -6.62329 -3.93520 0.93527 1.12792 2.37890 2.50310 2.77446 3.08611 3.20286 3.27981 3.37980 3.75535 3.94276 4.01473 4.06061 4.14186 4.28940 4.39961 4.52581 4.58951 4.67429 4.91130 5.05780 5.10404 5.18138 5.22479 5.28073 5.31611 5.37693 5.47549 5.55276 5.64773 5.88784 6.08817 6.19004 6.42306 6.65971 6.90057 7.01803 7.37689 7.88596 7.90869 8.43151 8.99816 9.33424 9.90173 10.53932 Molecular weight = 342.10amu Principal moments of inertia in cm(-1) A = 0.010280 B = 0.003879 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.100775 B = 7217.062675 C = 9742.162734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.024 3.976 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.292 4.292 8 H 0.111 0.889 9 N -0.537 5.537 10 C 0.460 3.540 11 O -0.587 6.587 12 C -0.062 4.062 13 C -0.085 4.085 14 C 0.157 3.843 15 N -0.560 5.560 16 C 0.094 3.906 17 C -0.130 4.130 18 C -0.152 4.152 19 C 0.509 3.491 20 O -0.494 6.494 21 C -0.116 4.116 22 C -0.159 4.159 23 C 0.512 3.488 24 F -0.170 7.170 25 F -0.179 7.179 26 F -0.179 7.179 27 C -0.084 4.084 28 H 0.277 0.723 29 H 0.394 0.606 30 H 0.174 0.826 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.407 -21.730 0.245 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.180 4.180 3 Si 0.762 3.238 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.421 4.421 8 H 0.129 0.871 9 N -0.171 5.171 10 C 0.248 3.752 11 O -0.473 6.473 12 C -0.067 4.067 13 C -0.107 4.107 14 C 0.064 3.936 15 N -0.285 5.285 16 C -0.029 4.029 17 C -0.168 4.168 18 C -0.192 4.192 19 C 0.298 3.702 20 O -0.368 6.368 21 C -0.138 4.138 22 C -0.161 4.161 23 C 0.458 3.542 24 F -0.152 7.152 25 F -0.161 7.161 26 F -0.160 7.160 27 C -0.104 4.104 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.191 0.809 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.150 0.850 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.339 -21.013 0.182 21.277 hybrid contribution -0.806 0.763 0.029 1.111 sum -4.146 -20.249 0.211 20.670 Atomic orbital electron populations 1.69599 1.06188 1.28921 1.47490 1.25438 0.95727 1.00253 0.96595 0.85691 0.79850 0.80296 0.77957 1.18850 1.20420 1.20419 1.19951 0.93921 0.81949 1.46303 0.87100 1.41935 1.09541 1.04765 1.60817 1.17489 0.87517 0.82878 0.87338 1.90646 1.12838 1.86562 1.57273 1.20241 0.92148 0.95302 0.98985 1.21916 1.03680 0.88763 0.96330 1.17382 0.90331 0.84594 1.01338 1.45736 1.07829 1.05340 1.69595 1.22319 0.97261 0.80640 1.02646 1.22645 0.92958 0.98015 1.03173 1.22340 0.99325 0.91818 1.05682 1.21155 0.81318 0.92139 0.75601 1.90755 1.54919 1.44042 1.47046 1.20253 0.92099 0.97197 1.04216 1.19468 0.90380 0.95493 1.10792 1.18224 0.88661 0.73766 0.73596 1.93215 1.90167 1.35628 1.96154 1.93198 1.90402 1.81233 1.51221 1.93198 1.90492 1.81166 1.51191 1.21264 0.94134 0.97361 0.97671 0.91264 0.77108 0.80922 0.89908 0.89463 0.89513 0.88628 0.87437 0.87272 0.84979 0.83843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.36 13.05 55.50 0.72 -22.64 16 2 C 0.02 0.63 5.50 -17.45 -0.10 0.53 16 3 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 4 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.29 -8.08 9.68 -15.01 -0.15 -8.22 16 8 H 0.11 3.21 7.15 -52.49 -0.38 2.83 16 9 N -0.54 -13.92 5.23 -11.87 -0.06 -13.98 16 10 C 0.46 11.69 7.72 -12.38 -0.10 11.60 16 11 O -0.59 -16.99 15.92 5.29 0.08 -16.91 16 12 C -0.06 -1.29 5.87 -104.99 -0.62 -1.90 16 13 C -0.09 -1.66 8.83 -38.96 -0.34 -2.00 16 14 C 0.16 2.39 6.59 -83.73 -0.55 1.84 16 15 N -0.56 -6.77 3.14 -112.20 -0.35 -7.13 16 16 C 0.09 0.63 6.52 -3.02 -0.02 0.61 16 17 C -0.13 -0.59 7.19 -25.00 -0.18 -0.77 16 18 C -0.15 -1.08 6.86 -26.74 -0.18 -1.26 16 19 C 0.51 6.67 7.92 -10.86 -0.09 6.59 16 20 O -0.49 -9.01 14.81 5.55 0.08 -8.93 16 21 C -0.12 -1.56 8.96 -39.30 -0.35 -1.91 16 22 C -0.16 -2.41 5.36 -104.71 -0.56 -2.97 16 23 C 0.51 7.13 3.31 36.01 0.12 7.25 16 24 F -0.17 -2.60 15.96 2.25 0.04 -2.56 16 25 F -0.18 -2.38 17.23 2.25 0.04 -2.34 16 26 F -0.18 -2.37 17.23 2.25 0.04 -2.33 16 27 C -0.08 -1.50 8.92 -39.14 -0.35 -1.85 16 28 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.39 9.65 5.92 -40.82 -0.24 9.41 16 30 H 0.17 3.81 4.84 -52.49 -0.25 3.56 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.48 7.21 -51.93 -0.37 0.11 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.13 1.33 6.72 -52.49 -0.35 0.98 16 38 H 0.14 2.57 5.48 -52.49 -0.29 2.29 16 LS Contribution 339.02 15.07 5.11 5.11 Total: -1.00 -33.49 339.02 -5.92 -39.41 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -3.13 Total: 9.29 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -3.46 Total: 7.54 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.31 Total: -43.74 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: 0.17 Total: -25.84 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 0.11 Total: -7.24 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.49 -5.92 -39.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069873703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.246 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds