Wall clock time and date at job start Tue Mar 31 2020 06:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.46928 * 2 1 4 4 C 1.47448 * 111.00170 * 55.44833 * 3 2 1 5 5 C 1.54315 * 107.23128 * 123.25642 * 4 3 2 6 6 C 1.55261 * 103.08741 * 22.21050 * 5 4 3 7 7 C 1.47849 * 111.00359 * 176.29522 * 3 2 1 8 8 H 1.09002 * 110.37017 * 332.57428 * 7 3 2 9 9 C 1.52995 * 110.37617 * 94.80153 * 7 3 2 10 10 H 1.09008 * 109.99538 * 58.81219 * 9 7 3 11 11 C 1.54330 * 109.99534 * 297.77566 * 9 7 3 12 12 C 1.55151 * 103.01871 * 218.66625 * 11 9 7 13 13 C 1.54908 * 101.58782 * 35.30152 * 12 11 9 14 14 N 1.47019 * 109.88042 * 179.90179 * 9 7 3 15 15 C 1.34773 * 125.65215 * 298.39391 * 14 9 7 16 16 O 1.21548 * 120.00119 * 0.39367 * 15 14 9 17 17 C 1.47886 * 120.00232 * 180.38951 * 15 14 9 18 18 C 1.39922 * 120.02614 * 155.76463 * 17 15 14 19 19 C 1.38326 * 120.35911 * 180.27787 * 18 17 15 20 20 C 1.37756 * 120.40780 * 359.48439 * 19 18 17 21 21 C 1.40741 * 120.04305 * 0.51414 * 20 19 18 22 22 C 1.41442 * 120.18025 * 179.72481 * 21 20 19 23 23 H 1.07997 * 120.00019 * 210.42747 * 22 21 20 24 24 C 1.39939 * 120.00011 * 30.42592 * 22 21 20 25 25 N 1.30826 * 119.99697 * 8.61946 * 24 22 21 26 26 Si 1.86797 * 119.99978 * 188.62087 * 24 22 21 27 27 H 1.48500 * 109.47270 * 89.99823 * 26 24 22 28 28 H 1.48498 * 109.46936 * 209.99913 * 26 24 22 29 29 H 1.48505 * 109.46888 * 329.99525 * 26 24 22 30 30 C 1.38990 * 120.02300 * 335.78436 * 17 15 14 31 31 H 1.08997 * 109.46665 * 173.71799 * 1 2 3 32 32 H 1.08997 * 109.47146 * 293.71815 * 1 2 3 33 33 H 1.08998 * 109.47172 * 53.72059 * 1 2 3 34 34 H 1.09000 * 109.47327 * 240.00576 * 2 1 3 35 35 H 1.08993 * 109.47343 * 119.99864 * 2 1 3 36 36 H 1.09000 * 109.89022 * 242.66590 * 4 3 2 37 37 H 1.09004 * 109.88251 * 3.69301 * 4 3 2 38 38 H 1.08999 * 110.70382 * 140.67112 * 5 4 3 39 39 H 1.08999 * 110.70743 * 263.72926 * 5 4 3 40 40 H 1.09000 * 111.08554 * 206.38698 * 6 5 4 41 41 H 1.08998 * 110.94615 * 82.52669 * 6 5 4 42 42 H 1.08995 * 110.85607 * 100.19427 * 11 9 7 43 43 H 1.09004 * 110.66364 * 337.04213 * 11 9 7 44 44 H 1.09002 * 111.00343 * 277.22861 * 12 11 9 45 45 H 1.09001 * 111.00910 * 153.37958 * 12 11 9 46 46 H 1.08995 * 110.36925 * 204.15426 * 13 12 11 47 47 H 1.09008 * 110.45739 * 81.87684 * 13 12 11 48 48 H 1.07999 * 119.82110 * 359.97438 * 18 17 15 49 49 H 1.07996 * 119.79707 * 179.74419 * 19 18 17 50 50 H 1.08002 * 119.97915 * 180.23787 * 20 19 18 51 51 H 0.96998 * 119.99616 * 180.02562 * 25 24 22 52 52 H 1.07997 * 120.20921 * 359.97438 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4597 2.1435 1.1337 5 6 2.6496 2.6969 1.9456 6 6 3.8090 2.6992 0.9131 7 6 3.4949 1.4256 0.0892 8 1 3.8684 0.5397 0.6028 9 6 4.1103 1.5294 -1.3077 10 1 3.7477 2.4268 -1.8090 11 6 3.7441 0.2822 -2.1397 12 6 5.0466 -0.0036 -2.9328 13 6 6.1322 0.3969 -1.9029 14 7 5.5764 1.5713 -1.2062 15 6 6.2933 2.5226 -0.5758 16 8 5.7262 3.4438 -0.0216 17 6 7.7701 2.4456 -0.5581 18 6 8.5297 3.6074 -0.3814 19 6 9.9114 3.5442 -0.3695 20 6 10.5555 2.3359 -0.5209 21 6 9.8083 1.1567 -0.6998 22 6 10.4667 -0.0847 -0.8614 23 1 10.0131 -0.8630 -1.4571 24 6 11.7057 -0.3044 -0.2493 25 7 12.1767 0.5669 0.6055 26 14 12.6873 -1.8416 -0.6527 27 1 13.5841 -1.5683 -1.8043 28 1 13.5008 -2.2330 0.5263 29 1 11.7571 -2.9457 -1.0008 30 6 8.4045 1.2193 -0.7175 31 1 -0.3632 -1.0215 -0.1124 32 1 -0.3633 0.4134 0.9408 33 1 -0.3633 0.6081 -0.8284 34 1 1.8934 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 0.8485 2.9665 0.7635 37 1 0.8559 1.4849 1.7582 38 1 2.4410 3.7084 2.2941 39 1 2.8813 2.0416 2.7853 40 1 4.7760 2.6146 1.4090 41 1 3.7703 3.5896 0.2856 42 1 2.9187 0.4972 -2.8183 43 1 3.4975 -0.5561 -1.4881 44 1 5.1056 0.6198 -3.8250 45 1 5.1234 -1.0600 -3.1905 46 1 7.0590 0.6613 -2.4121 47 1 6.3063 -0.4155 -1.1973 48 1 8.0345 4.5593 -0.2584 49 1 10.4888 4.4471 -0.2366 50 1 11.6346 2.2940 -0.5067 51 1 13.0357 0.4148 1.0295 52 1 7.8223 0.3200 -0.8542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069899320.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:28 Heat of formation + Delta-G solvation = 10.799840 kcal Electronic energy + Delta-G solvation = -31133.912786 eV Core-core repulsion = 27291.416285 eV Total energy + Delta-G solvation = -3842.496501 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.49573 -38.72280 -37.25931 -36.74671 -33.68714 -33.32850 -31.80216 -30.74614 -29.91643 -29.34952 -28.44809 -26.85222 -25.30190 -24.18706 -23.15830 -21.90222 -21.21553 -20.57676 -20.38333 -19.97521 -18.81729 -17.35162 -16.68846 -16.33793 -15.93259 -15.51865 -15.25963 -14.76757 -14.58336 -14.18835 -14.02622 -13.68421 -13.58670 -13.27371 -13.10642 -12.91745 -12.90926 -12.64723 -12.46128 -12.27519 -12.07201 -11.85585 -11.75330 -11.67089 -11.31832 -11.25788 -11.18406 -11.13970 -10.96136 -10.82140 -10.53320 -10.51871 -10.50748 -10.30944 -10.24036 -10.03405 -9.44118 -9.29436 -8.84217 -8.39408 -8.17379 -7.62782 -7.43731 -6.75699 -4.47046 2.23288 2.72548 3.04352 3.06521 3.11467 3.31509 3.76148 3.89879 4.04496 4.56892 4.62295 4.64685 4.78993 4.87637 4.91100 5.04945 5.07894 5.20180 5.28852 5.33412 5.41418 5.47446 5.48786 5.56895 5.58059 5.69640 5.77351 5.79340 5.83836 5.89960 5.96598 5.98064 6.01965 6.05196 6.15948 6.16098 6.20029 6.30860 6.40128 6.50319 6.64065 6.75677 6.80189 6.92075 6.98164 7.02863 7.11506 7.19630 7.38469 7.63942 7.84286 7.91018 8.02915 8.11378 8.50370 8.80097 8.80627 8.85875 10.19461 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014996 B = 0.003044 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.711143 B = 9197.083257 C =10039.771953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.038 3.962 3 N -0.522 5.522 4 C 0.044 3.956 5 C -0.155 4.155 6 C -0.100 4.100 7 C 0.065 3.935 8 H 0.051 0.949 9 C 0.157 3.843 10 H 0.078 0.922 11 C -0.124 4.124 12 C -0.138 4.138 13 C 0.098 3.902 14 N -0.612 5.612 15 C 0.573 3.427 16 O -0.540 6.540 17 C -0.117 4.117 18 C -0.169 4.169 19 C -0.120 4.120 20 C -0.130 4.130 21 C 0.099 3.901 22 C -0.467 4.467 23 H 0.077 0.923 24 C 0.073 3.927 25 N -0.807 5.807 26 Si 0.912 3.088 27 H -0.269 1.269 28 H -0.278 1.278 29 H -0.263 1.263 30 C -0.196 4.196 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.029 0.971 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.069 0.931 48 H 0.099 0.901 49 H 0.095 0.905 50 H 0.123 0.877 51 H 0.280 0.720 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.991 -2.883 -3.007 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.090 4.090 3 N -0.247 5.247 4 C -0.083 4.083 5 C -0.194 4.194 6 C -0.138 4.138 7 C -0.044 4.044 8 H 0.069 0.931 9 C 0.052 3.948 10 H 0.096 0.904 11 C -0.162 4.162 12 C -0.177 4.177 13 C -0.025 4.025 14 N -0.346 5.346 15 C 0.367 3.633 16 O -0.420 6.420 17 C -0.120 4.120 18 C -0.189 4.189 19 C -0.138 4.138 20 C -0.149 4.149 21 C 0.097 3.903 22 C -0.497 4.497 23 H 0.095 0.905 24 C -0.143 4.143 25 N -0.434 5.434 26 Si 0.736 3.264 27 H -0.194 1.194 28 H -0.204 1.204 29 H -0.187 1.187 30 C -0.216 4.216 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.113 0.887 47 H 0.087 0.913 48 H 0.117 0.883 49 H 0.113 0.887 50 H 0.141 0.859 51 H 0.091 0.909 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.213 -2.088 -2.979 16.616 hybrid contribution 0.823 -1.214 0.858 1.699 sum -15.391 -3.301 -2.121 15.883 Atomic orbital electron populations 1.21873 0.95105 1.01598 1.02274 1.22435 0.95736 0.89831 1.00988 1.63442 1.06305 1.12207 1.42759 1.22799 0.96907 0.97646 0.90980 1.23002 0.96584 1.01110 0.98672 1.23141 0.96990 0.97515 0.96174 1.22977 0.86813 0.98776 0.95797 0.93066 1.21347 0.80176 0.98780 0.94466 0.90432 1.22758 0.97838 0.97153 0.98432 1.22887 0.94640 1.01934 0.98193 1.22706 0.97797 0.87916 0.94107 1.48369 1.05803 1.25043 1.55384 1.18538 0.87574 0.80570 0.76656 1.90728 1.71679 1.34393 1.45153 1.19280 0.89850 0.95460 1.07446 1.20457 0.93389 0.96061 1.09023 1.20714 0.93678 0.97320 1.02116 1.21623 1.00359 0.90982 1.01958 1.17571 0.90383 0.93271 0.89118 1.19496 1.02556 0.99289 1.28372 0.90470 1.25855 0.97291 0.98027 0.93135 1.69757 1.18299 1.34776 1.20523 0.86257 0.79777 0.81552 0.78778 1.19390 1.20364 1.18699 1.21771 0.95114 0.95390 1.09290 0.92431 0.92814 0.91737 0.90038 0.95242 0.90848 0.92892 0.91160 0.92385 0.89728 0.89105 0.90129 0.90881 0.90678 0.90080 0.88736 0.91265 0.88254 0.88656 0.85885 0.90922 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.56 37.16 0.36 -0.90 16 2 C 0.04 0.38 5.14 -3.82 -0.02 0.36 16 3 N -0.52 -6.26 4.79 -223.38 -1.07 -7.33 16 4 C 0.04 0.51 6.21 -2.84 -0.02 0.49 16 5 C -0.16 -2.00 6.94 -24.84 -0.17 -2.17 16 6 C -0.10 -1.59 4.21 -24.53 -0.10 -1.70 16 7 C 0.07 0.92 2.17 -66.19 -0.14 0.78 16 8 H 0.05 0.77 7.71 -51.93 -0.40 0.37 16 9 C 0.16 2.22 2.86 -66.95 -0.19 2.03 16 10 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 11 C -0.12 -1.36 5.24 -24.90 -0.13 -1.49 16 12 C -0.14 -1.52 7.09 -24.59 -0.17 -1.70 16 13 C 0.10 1.42 4.99 -2.53 -0.01 1.40 16 14 N -0.61 -10.16 3.06 -164.10 -0.50 -10.66 16 15 C 0.57 11.58 7.10 -12.31 -0.09 11.49 16 16 O -0.54 -11.52 11.41 5.32 0.06 -11.46 16 17 C -0.12 -2.61 5.72 -105.04 -0.60 -3.22 16 18 C -0.17 -3.84 9.59 -38.92 -0.37 -4.22 16 19 C -0.12 -2.74 10.01 -39.73 -0.40 -3.14 16 20 C -0.13 -3.23 8.64 -38.81 -0.34 -3.56 16 21 C 0.10 2.47 5.54 -106.87 -0.59 1.88 16 22 C -0.47 -11.63 9.06 -37.73 -0.34 -11.97 16 23 H 0.08 1.82 7.86 -52.49 -0.41 1.40 16 24 C 0.07 1.76 5.28 -17.34 -0.09 1.67 16 25 N -0.81 -20.30 10.84 55.55 0.60 -19.70 16 26 Si 0.91 18.07 29.57 -169.99 -5.03 13.04 16 27 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 28 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 29 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 30 C -0.20 -4.44 7.73 -38.44 -0.30 -4.74 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.44 6.46 -51.93 -0.34 0.10 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.77 5.27 -51.93 -0.27 0.50 16 35 H 0.03 0.31 8.00 -51.93 -0.42 -0.10 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.54 6.03 -51.93 -0.31 0.23 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.59 6.28 -51.93 -0.33 1.26 16 41 H 0.09 1.61 6.71 -51.93 -0.35 1.26 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.76 5.86 -51.93 -0.30 0.45 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.51 6.26 -51.93 -0.32 1.19 16 47 H 0.07 1.00 7.18 -51.92 -0.37 0.63 16 48 H 0.10 2.17 7.82 -52.49 -0.41 1.76 16 49 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 50 H 0.12 3.16 6.26 -52.49 -0.33 2.83 16 51 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 52 H 0.11 2.32 4.35 -52.49 -0.23 2.09 16 LS Contribution 385.74 15.07 5.81 5.81 Total: -1.00 -26.92 385.74 -12.01 -38.93 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -8.16 Total: 10.06 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -3.73 Total: -18.69 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: -0.97 Total: -37.69 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.06 Total: -11.46 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -26.92 -12.01 -38.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069899320.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.726 kcal (2) G-P(sol) polarization free energy of solvation -26.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds