Wall clock time and date at job start Tue Mar 31 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.46928 * 2 1 4 4 C 1.47448 * 111.00170 * 55.44833 * 3 2 1 5 5 C 1.54315 * 107.23128 * 123.25642 * 4 3 2 6 6 C 1.55261 * 103.08741 * 22.21050 * 5 4 3 7 7 C 1.47849 * 111.00359 * 176.29522 * 3 2 1 8 8 H 1.09002 * 110.37017 * 332.57428 * 7 3 2 9 9 C 1.52995 * 110.37617 * 94.80153 * 7 3 2 10 10 H 1.09008 * 109.99538 * 58.81219 * 9 7 3 11 11 C 1.54330 * 109.99534 * 297.77566 * 9 7 3 12 12 C 1.55151 * 103.01871 * 218.66625 * 11 9 7 13 13 C 1.54908 * 101.58782 * 35.30152 * 12 11 9 14 14 N 1.47019 * 109.88042 * 179.90179 * 9 7 3 15 15 C 1.34773 * 125.65215 * 298.39391 * 14 9 7 16 16 O 1.21548 * 120.00119 * 0.39367 * 15 14 9 17 17 C 1.47886 * 120.00232 * 180.38951 * 15 14 9 18 18 C 1.39922 * 120.02614 * 155.76463 * 17 15 14 19 19 C 1.38326 * 120.35911 * 180.27787 * 18 17 15 20 20 C 1.37756 * 120.40780 * 359.48439 * 19 18 17 21 21 C 1.40741 * 120.04305 * 0.51414 * 20 19 18 22 22 C 1.41442 * 120.18025 * 179.72481 * 21 20 19 23 23 H 1.07997 * 120.00019 * 210.42747 * 22 21 20 24 24 C 1.39939 * 120.00011 * 30.42592 * 22 21 20 25 25 N 1.30826 * 119.99697 * 8.61946 * 24 22 21 26 26 Si 1.86797 * 119.99978 * 188.62087 * 24 22 21 27 27 H 1.48500 * 109.47270 * 89.99823 * 26 24 22 28 28 H 1.48498 * 109.46936 * 209.99913 * 26 24 22 29 29 H 1.48505 * 109.46888 * 329.99525 * 26 24 22 30 30 C 1.38990 * 120.02300 * 335.78436 * 17 15 14 31 31 H 1.08997 * 109.46665 * 173.71799 * 1 2 3 32 32 H 1.08997 * 109.47146 * 293.71815 * 1 2 3 33 33 H 1.08998 * 109.47172 * 53.72059 * 1 2 3 34 34 H 1.09000 * 109.47327 * 240.00576 * 2 1 3 35 35 H 1.08993 * 109.47343 * 119.99864 * 2 1 3 36 36 H 1.09000 * 109.89022 * 242.66590 * 4 3 2 37 37 H 1.09004 * 109.88251 * 3.69301 * 4 3 2 38 38 H 1.08999 * 110.70382 * 140.67112 * 5 4 3 39 39 H 1.08999 * 110.70743 * 263.72926 * 5 4 3 40 40 H 1.09000 * 111.08554 * 206.38698 * 6 5 4 41 41 H 1.08998 * 110.94615 * 82.52669 * 6 5 4 42 42 H 1.08995 * 110.85607 * 100.19427 * 11 9 7 43 43 H 1.09004 * 110.66364 * 337.04213 * 11 9 7 44 44 H 1.09002 * 111.00343 * 277.22861 * 12 11 9 45 45 H 1.09001 * 111.00910 * 153.37958 * 12 11 9 46 46 H 1.08995 * 110.36925 * 204.15426 * 13 12 11 47 47 H 1.09008 * 110.45739 * 81.87684 * 13 12 11 48 48 H 1.07999 * 119.82110 * 359.97438 * 18 17 15 49 49 H 1.07996 * 119.79707 * 179.74419 * 19 18 17 50 50 H 1.08002 * 119.97915 * 180.23787 * 20 19 18 51 51 H 0.96998 * 119.99616 * 180.02562 * 25 24 22 52 52 H 1.07997 * 120.20921 * 359.97438 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4597 2.1435 1.1337 5 6 2.6496 2.6969 1.9456 6 6 3.8090 2.6992 0.9131 7 6 3.4949 1.4256 0.0892 8 1 3.8684 0.5397 0.6028 9 6 4.1103 1.5294 -1.3077 10 1 3.7477 2.4268 -1.8090 11 6 3.7441 0.2822 -2.1397 12 6 5.0466 -0.0036 -2.9328 13 6 6.1322 0.3969 -1.9029 14 7 5.5764 1.5713 -1.2062 15 6 6.2933 2.5226 -0.5758 16 8 5.7262 3.4438 -0.0216 17 6 7.7701 2.4456 -0.5581 18 6 8.5297 3.6074 -0.3814 19 6 9.9114 3.5442 -0.3695 20 6 10.5555 2.3359 -0.5209 21 6 9.8083 1.1567 -0.6998 22 6 10.4667 -0.0847 -0.8614 23 1 10.0131 -0.8630 -1.4571 24 6 11.7057 -0.3044 -0.2493 25 7 12.1767 0.5669 0.6055 26 14 12.6873 -1.8416 -0.6527 27 1 13.5841 -1.5683 -1.8043 28 1 13.5008 -2.2330 0.5263 29 1 11.7571 -2.9457 -1.0008 30 6 8.4045 1.2193 -0.7175 31 1 -0.3632 -1.0215 -0.1124 32 1 -0.3633 0.4134 0.9408 33 1 -0.3633 0.6081 -0.8284 34 1 1.8934 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 0.8485 2.9665 0.7635 37 1 0.8559 1.4849 1.7582 38 1 2.4410 3.7084 2.2941 39 1 2.8813 2.0416 2.7853 40 1 4.7760 2.6146 1.4090 41 1 3.7703 3.5896 0.2856 42 1 2.9187 0.4972 -2.8183 43 1 3.4975 -0.5561 -1.4881 44 1 5.1056 0.6198 -3.8250 45 1 5.1234 -1.0600 -3.1905 46 1 7.0590 0.6613 -2.4121 47 1 6.3063 -0.4155 -1.1973 48 1 8.0345 4.5593 -0.2584 49 1 10.4888 4.4471 -0.2366 50 1 11.6346 2.2940 -0.5067 51 1 13.0357 0.4148 1.0295 52 1 7.8223 0.3200 -0.8542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069899320.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:27 Heat of formation + Delta-G solvation = -2.348917 kcal Electronic energy + Delta-G solvation = -31134.482959 eV Core-core repulsion = 27291.416285 eV Total energy + Delta-G solvation = -3843.066674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.79094 -40.02418 -38.81583 -38.18581 -35.48795 -34.28025 -33.18283 -31.88659 -31.73201 -30.88658 -29.41712 -27.98450 -27.14063 -25.50909 -24.14938 -23.30425 -22.78238 -21.89143 -21.67081 -21.03558 -20.23473 -18.96189 -18.01067 -17.62741 -17.29760 -16.93002 -16.67299 -16.49073 -15.81798 -15.46582 -15.18473 -15.05934 -14.81400 -14.59756 -14.50996 -14.12973 -14.05836 -13.95832 -13.72523 -13.56870 -13.34916 -13.23769 -12.92650 -12.88101 -12.84139 -12.59271 -12.48887 -12.21948 -12.19771 -12.07789 -11.96186 -11.87583 -11.67773 -11.59188 -11.38820 -11.32261 -11.17654 -11.08574 -10.40905 -9.63819 -9.46506 -9.33242 -9.23970 -8.57374 -6.38240 0.45443 0.93134 1.42141 1.49592 1.55014 1.99696 2.09414 2.23550 2.80966 3.01209 3.49212 3.58884 3.64357 3.78267 3.83935 3.96697 4.05129 4.11333 4.20800 4.22717 4.30286 4.38685 4.42206 4.49182 4.54369 4.58455 4.67136 4.68125 4.75154 4.84882 4.90748 4.96938 4.98625 5.00194 5.03635 5.06030 5.07151 5.13986 5.16169 5.18682 5.28406 5.32176 5.34671 5.37563 5.42158 5.47763 5.62142 5.81533 5.97845 6.01398 6.04313 6.19003 6.22353 6.54630 6.62388 6.92542 6.95016 7.27636 8.39735 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014996 B = 0.003044 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.711143 B = 9197.083257 C =10039.771953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.035 3.965 3 N -0.522 5.522 4 C 0.048 3.952 5 C -0.151 4.151 6 C -0.100 4.100 7 C 0.074 3.926 8 H 0.042 0.958 9 C 0.152 3.848 10 H 0.064 0.936 11 C -0.112 4.112 12 C -0.125 4.125 13 C 0.088 3.912 14 N -0.607 5.607 15 C 0.567 3.433 16 O -0.558 6.558 17 C -0.123 4.123 18 C -0.182 4.182 19 C -0.119 4.119 20 C -0.155 4.155 21 C 0.073 3.927 22 C -0.493 4.493 23 H 0.085 0.915 24 C 0.030 3.970 25 N -0.840 5.840 26 Si 0.985 3.015 27 H -0.263 1.263 28 H -0.275 1.275 29 H -0.254 1.254 30 C -0.193 4.193 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.025 0.975 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.110 0.890 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.105 0.895 49 H 0.116 0.884 50 H 0.109 0.891 51 H 0.285 0.715 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.162 -5.231 -4.033 19.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.093 4.093 3 N -0.247 5.247 4 C -0.080 4.080 5 C -0.190 4.190 6 C -0.138 4.138 7 C -0.035 4.035 8 H 0.060 0.940 9 C 0.049 3.951 10 H 0.082 0.918 11 C -0.149 4.149 12 C -0.162 4.162 13 C -0.034 4.034 14 N -0.340 5.340 15 C 0.358 3.642 16 O -0.439 6.439 17 C -0.126 4.126 18 C -0.202 4.202 19 C -0.137 4.137 20 C -0.175 4.175 21 C 0.071 3.929 22 C -0.523 4.523 23 H 0.103 0.897 24 C -0.183 4.183 25 N -0.467 5.467 26 Si 0.806 3.194 27 H -0.188 1.188 28 H -0.200 1.200 29 H -0.177 1.177 30 C -0.212 4.212 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.043 0.957 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.120 0.880 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.128 0.872 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.123 0.877 49 H 0.134 0.866 50 H 0.127 0.873 51 H 0.096 0.904 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.418 -4.448 -4.024 19.370 hybrid contribution 1.430 -0.409 1.206 1.915 sum -16.987 -4.858 -2.818 17.892 Atomic orbital electron populations 1.21830 0.93466 1.02675 1.02296 1.22556 0.97045 0.88415 1.01251 1.63464 1.04534 1.13745 1.42983 1.22824 0.96206 0.98129 0.90820 1.22971 0.96064 1.01763 0.98153 1.22877 0.96413 0.97637 0.96840 1.22792 0.88454 0.97128 0.95175 0.94022 1.21534 0.78345 1.00139 0.95126 0.91773 1.22753 0.98355 0.95562 0.98270 1.22866 0.92701 1.03708 0.96969 1.22842 0.98629 0.86995 0.94939 1.48375 1.07132 1.24468 1.53986 1.18274 0.86956 0.81477 0.77444 1.90736 1.71707 1.35416 1.46088 1.19611 0.91499 0.95230 1.06251 1.20639 0.93509 0.96669 1.09410 1.20913 0.94005 0.97587 1.01181 1.21589 0.99795 0.91924 1.04219 1.17938 0.91545 0.93709 0.89746 1.19803 1.03709 0.99547 1.29220 0.89693 1.26744 0.97872 1.01195 0.92443 1.69842 1.18880 1.36699 1.21304 0.85151 0.78149 0.77575 0.78547 1.18822 1.19999 1.17725 1.21974 0.94512 0.96308 1.08443 0.90806 0.92709 0.91828 0.89061 0.95704 0.90174 0.91116 0.90610 0.92252 0.93368 0.91429 0.88027 0.89662 0.90216 0.87206 0.90501 0.91045 0.87728 0.86566 0.87330 0.90405 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.56 71.98 0.69 -1.22 16 2 C 0.03 0.60 5.14 86.30 0.44 1.04 16 3 N -0.52 -11.48 4.79 -860.64 -4.12 -15.61 16 4 C 0.05 1.00 6.21 86.64 0.54 1.53 16 5 C -0.15 -3.83 6.94 31.82 0.22 -3.61 16 6 C -0.10 -3.25 4.21 32.02 0.13 -3.11 16 7 C 0.07 2.03 2.17 45.38 0.10 2.13 16 8 H 0.04 1.23 7.71 -2.39 -0.02 1.21 16 9 C 0.15 4.16 2.86 45.34 0.13 4.29 16 10 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 11 C -0.11 -2.09 5.24 31.78 0.17 -1.93 16 12 C -0.12 -2.36 7.09 31.98 0.23 -2.14 16 13 C 0.09 2.47 4.99 86.85 0.43 2.90 16 14 N -0.61 -20.16 3.06 -791.37 -2.42 -22.58 16 15 C 0.57 23.59 7.10 86.80 0.62 24.21 16 16 O -0.56 -24.87 11.41 -3.87 -0.04 -24.91 16 17 C -0.12 -5.65 5.72 -20.13 -0.12 -5.77 16 18 C -0.18 -8.56 9.59 22.70 0.22 -8.34 16 19 C -0.12 -5.62 10.01 22.18 0.22 -5.39 16 20 C -0.16 -8.06 8.64 22.77 0.20 -7.87 16 21 C 0.07 3.76 5.54 -21.32 -0.12 3.64 16 22 C -0.49 -24.98 9.06 23.47 0.21 -24.76 16 23 H 0.08 4.02 7.86 -2.91 -0.02 3.99 16 24 C 0.03 1.48 5.28 85.25 0.45 1.93 16 25 N -0.84 -43.27 10.84 21.82 0.24 -43.03 16 26 Si 0.98 36.80 29.57 68.60 2.03 38.82 16 27 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 28 H -0.28 -10.04 7.11 99.48 0.71 -9.33 16 29 H -0.25 -9.02 7.11 99.48 0.71 -8.32 16 30 C -0.19 -8.97 7.73 23.01 0.18 -8.79 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.71 6.46 -2.39 -0.02 0.70 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 1.38 5.27 -2.39 -0.01 1.37 16 35 H 0.02 0.46 8.00 -2.39 -0.02 0.44 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.25 6.03 -2.38 -0.01 1.24 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.05 1.91 6.28 -2.39 -0.02 1.90 16 41 H 0.07 2.50 6.71 -2.39 -0.02 2.48 16 42 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.08 1.44 5.86 -2.39 -0.01 1.42 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 45 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.08 2.45 6.26 -2.39 -0.01 2.43 16 47 H 0.07 1.98 7.18 -2.38 -0.02 1.97 16 48 H 0.10 4.73 7.82 -2.91 -0.02 4.70 16 49 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 50 H 0.11 5.87 6.26 -2.91 -0.02 5.85 16 51 H 0.29 13.43 8.30 -92.71 -0.77 12.66 16 52 H 0.13 5.47 4.35 -2.91 -0.01 5.46 16 Total: -1.00 -61.09 385.74 1.53 -59.56 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: 0.92 Total: 39.02 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 4.94 Total: -31.26 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -6.31 Total: -81.23 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.04 Total: -24.91 kcal Atomic # 14 Polarization: 36.80 SS G_CDS: 2.03 Total: 38.82 kcal Total: -61.09 1.53 -59.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069899320.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.210 kcal (2) G-P(sol) polarization free energy of solvation -61.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds