Wall clock time and date at job start Tue Mar 31 2020 07:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30062 * 124.93522 * 2 1 4 4 C 1.35873 * 109.55741 * 179.97438 * 3 2 1 5 5 C 1.39413 * 133.51883 * 179.97438 * 4 3 2 6 6 C 1.39115 * 119.50864 * 180.02562 * 5 4 3 7 7 C 1.47674 * 119.90403 * 179.97438 * 6 5 4 8 8 O 1.21576 * 119.99799 * 329.38359 * 7 6 5 9 9 N 1.34779 * 120.00336 * 149.38495 * 7 6 5 10 10 C 1.46497 * 119.99947 * 6.49737 * 9 7 6 11 11 C 1.50704 * 109.46933 * 99.05150 * 10 9 7 12 12 H 1.07994 * 120.00277 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99715 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00390 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99525 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47659 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.47118 * 120.00069 * 15 13 11 18 18 H 1.48501 * 109.46876 * 239.99723 * 15 13 11 19 19 C 1.46506 * 120.00207 * 186.50233 * 9 7 6 20 20 C 1.52998 * 109.47014 * 89.00613 * 19 9 7 21 21 C 1.52991 * 109.47331 * 63.53614 * 20 19 9 22 22 C 1.52997 * 109.46773 * 183.53852 * 20 19 9 23 23 C 1.52998 * 109.47069 * 303.53568 * 20 19 9 24 24 C 1.40140 * 120.19332 * 0.02562 * 6 5 4 25 25 C 1.36426 * 120.46155 * 0.25349 * 24 6 5 26 26 C 1.39079 * 120.14295 * 359.49409 * 25 24 6 27 27 N 1.36086 * 124.93476 * 179.97438 * 2 1 3 28 28 C 1.46504 * 126.30392 * 359.97438 * 27 2 1 29 29 H 1.08993 * 109.46542 * 90.02796 * 1 2 3 30 30 H 1.08992 * 109.47052 * 210.02665 * 1 2 3 31 31 H 1.09002 * 109.46765 * 330.03096 * 1 2 3 32 32 H 1.07999 * 120.24171 * 0.02562 * 5 4 3 33 33 H 1.08996 * 109.47703 * 219.05541 * 10 9 7 34 34 H 1.09004 * 109.47037 * 339.05815 * 10 9 7 35 35 H 0.97002 * 120.00284 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.46730 * 209.00831 * 19 9 7 37 37 H 1.09000 * 109.46602 * 329.00547 * 19 9 7 38 38 H 1.09007 * 109.47460 * 59.99727 * 21 20 19 39 39 H 1.08997 * 109.47816 * 179.97438 * 21 20 19 40 40 H 1.09004 * 109.47536 * 300.00287 * 21 20 19 41 41 H 1.09000 * 109.47823 * 59.99764 * 22 20 19 42 42 H 1.09001 * 109.47206 * 180.02562 * 22 20 19 43 43 H 1.09006 * 109.47225 * 299.99579 * 22 20 19 44 44 H 1.08998 * 109.47425 * 65.37478 * 23 20 19 45 45 H 1.09004 * 109.47075 * 185.37780 * 23 20 19 46 46 H 1.09003 * 109.47413 * 305.37009 * 23 20 19 47 47 H 1.08008 * 119.76756 * 179.97438 * 24 6 5 48 48 H 1.07998 * 119.93204 * 179.72377 * 25 24 6 49 49 H 1.09001 * 109.46830 * 90.01898 * 28 27 2 50 50 H 1.08999 * 109.47166 * 210.01616 * 28 27 2 51 51 H 1.08992 * 109.47089 * 330.02029 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2519 1.0663 0.0000 4 6 3.5620 0.7059 0.0006 5 6 4.7557 1.4261 0.0004 6 6 5.9678 0.7435 0.0006 7 6 7.2375 1.4976 -0.0002 8 8 7.2973 2.5867 -0.5372 9 7 8.3300 0.9785 0.5944 10 6 8.2996 -0.3902 1.1158 11 6 8.9467 -1.3206 0.1225 12 1 9.3415 -0.9313 -0.8042 13 6 9.0347 -2.6690 0.3970 14 7 8.5535 -3.1432 1.5253 15 14 9.8375 -3.8221 -0.8339 16 1 10.2950 -3.0458 -2.0142 17 1 11.0024 -4.4901 -0.1997 18 1 8.8539 -4.8473 -1.2661 19 6 9.5480 1.7831 0.7193 20 6 9.5024 2.5778 2.0258 21 6 9.4953 1.6106 3.2112 22 6 10.7319 3.4842 2.1145 23 6 8.2346 3.4336 2.0582 24 6 5.9875 -0.6578 0.0005 25 6 4.8214 -1.3659 -0.0051 26 6 3.6002 -0.7004 0.0000 27 7 2.2864 -1.1156 0.0005 28 6 1.8152 -2.5028 0.0016 29 1 -0.3632 -0.0005 -1.0276 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 4.7394 2.5060 0.0000 33 1 8.8429 -0.4316 2.0598 34 1 7.2655 -0.6942 1.2781 35 1 8.6157 -4.0917 1.7185 36 1 10.4182 1.1266 0.7234 37 1 9.6164 2.4718 -0.1228 38 1 10.3986 1.0009 3.1881 39 1 9.4633 2.1768 4.1420 40 1 8.6194 0.9648 3.1480 41 1 10.7370 4.1733 1.2700 42 1 10.6997 4.0501 3.0455 43 1 11.6352 2.8745 2.0914 44 1 7.3592 2.7850 2.0913 45 1 8.2486 4.0705 2.9428 46 1 8.1927 4.0551 1.1638 47 1 6.9325 -1.1808 0.0002 48 1 4.8466 -2.4456 -0.0096 49 1 1.6983 -2.8477 -1.0258 50 1 2.5411 -3.1327 0.5159 51 1 0.8557 -2.5602 0.5155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069950861.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:15 Heat of formation + Delta-G solvation = 49.979839 kcal Electronic energy + Delta-G solvation = -31361.410178 eV Core-core repulsion = 27455.186738 eV Total energy + Delta-G solvation = -3906.223440 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.93868 -39.72691 -37.17566 -36.17305 -34.59364 -34.00636 -32.46126 -31.34060 -30.07975 -28.29215 -27.40668 -27.01878 -26.88333 -26.61696 -25.43643 -23.22060 -22.04689 -21.74941 -19.95388 -19.23368 -18.18337 -17.33364 -16.78229 -16.63029 -15.92378 -15.66857 -15.29445 -14.84878 -14.52947 -14.25850 -13.89638 -13.81393 -13.61286 -13.48429 -13.33308 -13.07565 -12.92768 -12.77316 -12.72053 -12.47302 -12.40795 -12.34799 -11.91375 -11.78766 -11.50264 -11.19640 -11.10239 -11.04239 -10.93456 -10.90562 -10.62140 -10.38491 -10.26236 -10.17743 -10.11798 -9.85025 -9.70372 -9.54311 -9.02082 -8.65460 -7.89728 -7.67697 -7.55980 -6.30339 -4.39245 1.33384 1.63017 2.72135 3.01493 3.14572 3.24286 3.29387 3.57065 3.89773 4.22221 4.31384 4.45058 4.63422 4.69367 4.99561 5.01047 5.15588 5.24090 5.26118 5.27809 5.32383 5.34162 5.42563 5.51212 5.58806 5.79475 5.83490 5.93603 5.94111 5.95009 5.98929 6.16632 6.20320 6.25586 6.31806 6.38287 6.46525 6.54229 6.55860 6.63195 6.69615 6.80564 6.86019 6.91137 7.01852 7.03498 7.22720 7.30069 7.37659 7.57011 7.66623 7.94017 8.10303 8.37777 8.72186 9.05681 9.29157 10.73384 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.004475 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.136421 B = 6255.752284 C = 8681.965309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.260 3.740 3 N -0.487 5.487 4 C 0.022 3.978 5 C -0.012 4.012 6 C -0.137 4.137 7 C 0.563 3.437 8 O -0.566 6.566 9 N -0.584 5.584 10 C 0.201 3.799 11 C -0.542 4.542 12 H 0.066 0.934 13 C 0.069 3.931 14 N -0.881 5.881 15 Si 0.894 3.106 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.131 3.869 20 C -0.084 4.084 21 C -0.141 4.141 22 C -0.135 4.135 23 C -0.133 4.133 24 C -0.077 4.077 25 C -0.131 4.131 26 C 0.068 3.932 27 N -0.496 5.496 28 C 0.080 3.920 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.132 0.868 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.267 0.733 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.041 0.959 46 H 0.062 0.938 47 H 0.207 0.793 48 H 0.122 0.878 49 H 0.072 0.928 50 H 0.086 0.914 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.905 1.669 1.106 10.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.005 4.005 3 N -0.207 5.207 4 C -0.095 4.095 5 C -0.032 4.032 6 C -0.142 4.142 7 C 0.352 3.648 8 O -0.448 6.448 9 N -0.313 5.313 10 C 0.082 3.918 11 C -0.580 4.580 12 H 0.084 0.916 13 C -0.136 4.136 14 N -0.519 5.519 15 Si 0.721 3.279 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.207 1.207 19 C 0.008 3.992 20 C -0.085 4.085 21 C -0.198 4.198 22 C -0.193 4.193 23 C -0.190 4.190 24 C -0.095 4.095 25 C -0.152 4.152 26 C -0.041 4.041 27 N -0.187 5.187 28 C -0.063 4.063 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.150 0.850 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.081 0.919 47 H 0.223 0.777 48 H 0.140 0.860 49 H 0.091 0.909 50 H 0.104 0.896 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.188 2.751 0.956 10.596 hybrid contribution 0.661 -1.876 -0.493 2.050 sum -9.526 0.875 0.464 9.577 Atomic orbital electron populations 1.20287 0.84755 1.04175 1.03747 1.23475 0.95491 0.80917 1.00641 1.70338 1.01043 1.27298 1.22009 1.18738 0.91560 0.90331 1.08849 1.20208 0.87962 0.99574 0.95495 1.19725 0.92950 0.94165 1.07341 1.18031 0.83653 0.84814 0.78269 1.90668 1.85325 1.22228 1.46542 1.47943 1.10865 1.16023 1.56468 1.20459 1.00061 0.75953 0.95371 1.21553 1.39282 0.92179 1.04974 0.91572 1.24975 0.94974 0.98154 0.95458 1.69945 1.44483 1.14544 1.22882 0.86492 0.79334 0.80689 0.81417 1.19428 1.20733 1.20715 1.21362 0.87711 0.94089 0.96079 1.20949 0.95582 0.95619 0.96378 1.21975 1.02795 0.98777 0.96298 1.21782 0.97220 0.99062 1.01259 1.21838 0.96994 0.99165 1.01006 1.22914 1.01780 0.93397 0.91411 1.19709 0.88503 0.99672 1.07342 1.19183 0.85110 0.95203 1.04569 1.45021 1.04902 1.07256 1.61543 1.21933 1.01384 0.79725 1.03250 0.89802 0.90602 0.88887 0.85019 0.93888 0.91596 0.92337 0.90270 0.90947 0.92658 0.93783 0.91496 0.92808 0.92981 0.92733 0.93046 0.93967 0.91932 0.77667 0.86044 0.90949 0.89556 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.17 36.01 0.37 -0.23 16 2 C 0.26 3.68 7.85 -154.81 -1.22 2.47 16 3 N -0.49 -8.71 11.28 -8.25 -0.09 -8.81 16 4 C 0.02 0.42 7.22 -84.72 -0.61 -0.19 16 5 C -0.01 -0.24 9.64 -38.82 -0.37 -0.61 16 6 C -0.14 -2.86 5.57 -105.01 -0.58 -3.45 16 7 C 0.56 12.26 5.65 -12.41 -0.07 12.19 16 8 O -0.57 -13.07 14.67 5.30 0.08 -12.99 16 9 N -0.58 -12.21 2.01 -176.23 -0.35 -12.56 16 10 C 0.20 4.53 3.92 -5.19 -0.02 4.51 16 11 C -0.54 -13.16 7.49 -34.44 -0.26 -13.42 16 12 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 13 C 0.07 1.69 5.35 -17.82 -0.10 1.59 16 14 N -0.88 -22.33 13.29 55.43 0.74 -21.60 16 15 Si 0.89 19.39 29.54 -169.99 -5.02 14.37 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 C 0.13 2.44 4.59 -4.04 -0.02 2.43 16 20 C -0.08 -1.36 0.85 -154.52 -0.13 -1.49 16 21 C -0.14 -2.30 7.46 37.15 0.28 -2.03 16 22 C -0.14 -1.82 8.47 37.16 0.31 -1.51 16 23 C -0.13 -2.24 7.12 37.16 0.26 -1.97 16 24 C -0.08 -1.59 7.39 -39.52 -0.29 -1.88 16 25 C -0.13 -2.44 9.97 -39.92 -0.40 -2.84 16 26 C 0.07 1.22 6.87 -83.95 -0.58 0.65 16 27 N -0.50 -7.04 3.20 -118.45 -0.38 -7.42 16 28 C 0.08 0.73 10.95 59.85 0.66 1.38 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.44 7.01 -51.93 -0.36 0.08 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.13 2.59 7.92 -52.49 -0.42 2.17 16 33 H 0.04 1.01 5.76 -51.93 -0.30 0.71 16 34 H 0.07 1.55 4.02 -52.07 -0.21 1.34 16 35 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 36 H 0.08 1.48 8.06 -51.93 -0.42 1.06 16 37 H 0.07 1.38 7.37 -51.93 -0.38 1.00 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 1.23 5.82 -51.93 -0.30 0.93 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.96 6.64 -51.93 -0.34 0.62 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 1.12 7.29 -51.93 -0.38 0.74 16 47 H 0.21 4.68 3.11 -52.48 -0.16 4.52 16 48 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.08 0.52 6.99 -51.93 -0.36 0.16 16 LS Contribution 397.42 15.07 5.99 5.99 Total: -1.00 -29.74 397.42 -9.65 -39.38 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.84 Total: 8.06 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -2.77 Total: -4.42 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.09 Total: -50.39 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.08 Total: -12.99 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.74 -9.65 -39.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069950861.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.362 kcal (2) G-P(sol) polarization free energy of solvation -29.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds