Wall clock time and date at job start Tue Mar 31 2020 06:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00368 * 2 1 4 4 H 1.48497 * 109.47189 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46821 * 300.00543 * 3 2 1 6 6 H 1.48506 * 109.46625 * 60.00164 * 3 2 1 7 7 C 1.38760 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00403 * 200.51859 * 7 2 1 9 9 N 1.36842 * 119.99535 * 20.52188 * 7 2 1 10 10 C 1.46500 * 120.00466 * 37.30074 * 9 7 2 11 11 C 1.50699 * 109.46797 * 92.42473 * 10 9 7 12 12 C 1.38244 * 119.98697 * 95.70848 * 11 10 9 13 13 C 1.38214 * 120.00844 * 180.27233 * 12 11 10 14 14 C 1.38348 * 119.99312 * 359.47197 * 13 12 11 15 15 Cl 1.73596 * 120.01751 * 180.23159 * 14 13 12 16 16 C 1.38353 * 119.97032 * 0.55361 * 14 13 12 17 17 C 1.38220 * 119.98550 * 359.69985 * 16 14 13 18 18 C 1.39385 * 119.99766 * 217.30082 * 9 7 2 19 19 C 1.39261 * 119.95341 * 179.97438 * 18 9 7 20 20 C 1.37932 * 120.19302 * 180.02562 * 19 18 9 21 21 C 1.38762 * 119.96438 * 359.97438 * 20 19 18 22 22 N 1.39395 * 133.22358 * 179.97438 * 21 20 19 23 23 H 0.96993 * 125.81894 * 0.04123 * 22 21 20 24 24 C 1.34630 * 108.35946 * 180.02562 * 22 21 20 25 25 O 1.21688 * 125.14656 * 179.97438 * 24 22 21 26 26 N 1.34628 * 109.70102 * 0.02562 * 24 22 21 27 27 H 0.96999 * 125.80621 * 179.97438 * 26 24 22 28 28 C 1.39298 * 108.38555 * 359.97438 * 26 24 22 29 29 C 1.38529 * 133.25387 * 180.32288 * 28 26 24 30 30 H 0.97000 * 119.99986 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.46907 * 332.42636 * 10 9 7 32 32 H 1.08994 * 109.47587 * 212.42281 * 10 9 7 33 33 H 1.07996 * 119.99026 * 0.02562 * 12 11 10 34 34 H 1.08008 * 120.00106 * 179.70547 * 13 12 11 35 35 H 1.07998 * 120.00570 * 179.68170 * 16 14 13 36 36 H 1.07999 * 119.99111 * 180.02562 * 17 16 14 37 37 H 1.07995 * 119.90186 * 0.02756 * 19 18 9 38 38 H 1.08002 * 120.01851 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.10812 * 359.93650 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0100 -1.2017 -0.0005 8 1 3.0386 -1.2315 0.3273 9 7 1.3908 -2.3489 -0.4165 10 6 0.4466 -2.3073 -1.5358 11 6 1.1780 -2.5977 -2.8210 12 6 1.1948 -3.8824 -3.3314 13 6 1.8702 -4.1503 -4.5071 14 6 2.5203 -3.1306 -5.1791 15 17 3.3637 -3.4652 -6.6590 16 6 2.5035 -1.8452 -4.6675 17 6 1.8322 -1.5794 -3.4889 18 6 1.6586 -3.5572 0.2247 19 6 1.0276 -4.7241 -0.1990 20 6 1.2886 -5.9223 0.4324 21 6 2.1826 -5.9667 1.4926 22 7 2.6418 -6.9970 2.3116 23 1 2.3774 -7.9285 2.2543 24 6 3.5153 -6.4789 3.1954 25 8 4.1006 -7.1112 4.0548 26 7 3.6422 -5.1552 2.9853 27 1 4.2110 -4.5526 3.4895 28 6 2.8178 -4.7983 1.9207 29 6 2.5590 -3.5966 1.2820 30 1 -0.4850 0.8400 0.0004 31 1 -0.0073 -1.3179 -1.5916 32 1 -0.3310 -3.0557 -1.3833 33 1 0.6835 -4.6774 -2.8091 34 1 1.8873 -5.1550 -4.9032 35 1 3.0152 -1.0497 -5.1889 36 1 1.8187 -0.5760 -3.0898 37 1 0.3320 -4.6907 -1.0244 38 1 0.7973 -6.8255 0.1017 39 1 3.0520 -2.6926 1.6079 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069973695.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:17 Heat of formation + Delta-G solvation = 53.243637 kcal Electronic energy + Delta-G solvation = -26694.606556 eV Core-core repulsion = 22821.734526 eV Total energy + Delta-G solvation = -3872.872030 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 343.083 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.72045 -39.34536 -38.08422 -36.67191 -36.15161 -34.45881 -33.48785 -32.16270 -31.04794 -30.77733 -29.08741 -27.43278 -26.15758 -23.90508 -22.63336 -22.39987 -21.80569 -21.22809 -20.43989 -17.93656 -17.48833 -16.90118 -16.60812 -15.94898 -15.89290 -15.67286 -15.16536 -14.97533 -14.78545 -14.25249 -13.96260 -13.62201 -13.27271 -13.21719 -13.19742 -12.95267 -12.49561 -12.09474 -11.81361 -11.76090 -11.61439 -11.33127 -11.13363 -10.86359 -10.80469 -10.74292 -10.64609 -10.54180 -10.35861 -10.25946 -9.97063 -9.24042 -8.74694 -8.36335 -8.29011 -7.62647 -6.75870 -6.31741 -4.10142 1.41737 1.59427 1.97852 2.28635 2.31659 3.00284 3.02816 3.10288 3.13237 3.37999 3.79037 3.98517 4.01347 4.43897 4.78607 4.87002 5.02619 5.11670 5.24569 5.42440 5.61146 5.64806 5.78947 5.83085 5.95767 6.00444 6.02856 6.15176 6.27850 6.42093 6.47569 6.56966 6.72604 6.81973 6.87684 6.99946 7.08156 7.13768 7.20975 7.21827 7.29852 7.52952 7.79824 7.96769 8.44835 8.71948 9.04862 9.43667 10.42448 Molecular weight = 343.08amu Principal moments of inertia in cm(-1) A = 0.008086 B = 0.004248 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3462.125421 B = 6589.676692 C = 9027.655670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.038 3.962 3 Si 0.910 3.090 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.310 4.310 8 H 0.089 0.911 9 N -0.433 5.433 10 C 0.146 3.854 11 C -0.076 4.076 12 C -0.102 4.102 13 C -0.116 4.116 14 C -0.043 4.043 15 Cl -0.090 7.090 16 C -0.117 4.117 17 C -0.082 4.082 18 C 0.236 3.764 19 C -0.215 4.215 20 C -0.051 4.051 21 C -0.030 4.030 22 N -0.640 5.640 23 H 0.424 0.576 24 C 0.679 3.321 25 O -0.589 6.589 26 N -0.647 5.647 27 H 0.427 0.573 28 C 0.144 3.856 29 C -0.202 4.202 30 H 0.271 0.729 31 H 0.120 0.880 32 H 0.063 0.937 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 -4.382 -7.568 8.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.168 4.168 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.438 4.438 8 H 0.107 0.893 9 N -0.120 5.120 10 C 0.022 3.978 11 C -0.078 4.078 12 C -0.121 4.121 13 C -0.135 4.135 14 C -0.070 4.070 15 Cl -0.061 7.061 16 C -0.135 4.135 17 C -0.100 4.100 18 C 0.120 3.880 19 C -0.239 4.239 20 C -0.073 4.073 21 C -0.130 4.130 22 N -0.286 5.286 23 H 0.263 0.737 24 C 0.379 3.621 25 O -0.468 6.468 26 N -0.292 5.292 27 H 0.268 0.732 28 C 0.042 3.958 29 C -0.230 4.230 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.082 0.918 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.150 0.850 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.312 -4.382 -7.263 8.488 hybrid contribution 0.641 0.709 0.026 0.956 sum 0.953 -3.673 -7.237 8.171 Atomic orbital electron populations 1.69976 1.06017 1.27918 1.45496 1.25357 0.95181 0.99812 0.96433 0.86123 0.80210 0.81808 0.78274 1.19052 1.20315 1.20561 1.19361 0.96011 0.84310 1.44102 0.89311 1.42230 1.40582 1.03643 1.25500 1.20550 0.90416 1.05448 0.81391 1.20830 0.97500 0.92806 0.96681 1.21169 0.99126 0.96764 0.95001 1.20937 0.98463 0.98172 0.95888 1.20829 1.00838 0.95403 0.89920 1.98334 1.77162 1.95681 1.34946 1.21014 1.00659 0.94879 0.96985 1.21090 0.95567 1.00210 0.93181 1.17686 0.93031 0.87246 0.90022 1.20320 1.06763 0.91291 1.05531 1.19516 0.96495 0.97563 0.93722 1.17513 1.07789 0.86226 1.01515 1.42566 1.43118 1.10486 1.32469 0.73651 1.15896 0.81653 0.81799 0.82713 1.91016 1.54234 1.63985 1.37611 1.42874 1.44008 1.08967 1.33345 0.73238 1.17688 0.93599 0.94463 0.90057 1.19260 1.07338 0.94893 1.01537 0.91885 0.86238 0.91830 0.85207 0.85629 0.85630 0.85023 0.86161 0.86829 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -19.96 11.43 55.49 0.63 -19.32 16 2 C 0.04 0.84 4.95 -17.45 -0.09 0.76 16 3 Si 0.91 17.70 29.60 -169.99 -5.03 12.67 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 6 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.31 -6.86 8.48 -15.12 -0.13 -6.99 16 8 H 0.09 1.99 6.82 -52.49 -0.36 1.63 16 9 N -0.43 -8.86 2.62 -114.40 -0.30 -9.16 16 10 C 0.15 2.70 4.89 -5.19 -0.03 2.68 16 11 C -0.08 -1.26 5.46 -104.62 -0.57 -1.83 16 12 C -0.10 -1.47 9.16 -39.59 -0.36 -1.83 16 13 C -0.12 -1.58 9.83 -39.55 -0.39 -1.97 16 14 C -0.04 -0.61 6.32 -39.50 -0.25 -0.86 16 15 Cl -0.09 -1.13 28.96 -51.86 -1.50 -2.64 16 16 C -0.12 -1.70 9.83 -39.55 -0.39 -2.09 16 17 C -0.08 -1.32 9.72 -39.59 -0.38 -1.71 16 18 C 0.24 4.57 6.51 -83.79 -0.55 4.03 16 19 C -0.21 -3.58 8.68 -39.31 -0.34 -3.92 16 20 C -0.05 -0.78 10.06 -39.50 -0.40 -1.17 16 21 C -0.03 -0.49 7.26 -83.68 -0.61 -1.10 16 22 N -0.64 -9.78 6.15 -14.23 -0.09 -9.87 16 23 H 0.42 5.18 8.96 -40.82 -0.37 4.82 16 24 C 0.68 11.94 9.21 -87.18 -0.80 11.14 16 25 O -0.59 -11.89 18.05 5.20 0.09 -11.79 16 26 N -0.65 -10.55 6.15 -14.31 -0.09 -10.64 16 27 H 0.43 5.92 8.96 -40.82 -0.37 5.56 16 28 C 0.14 2.54 7.25 -83.81 -0.61 1.94 16 29 C -0.20 -3.86 9.28 -39.22 -0.36 -4.22 16 30 H 0.27 6.02 8.31 -40.82 -0.34 5.68 16 31 H 0.12 2.48 5.46 -51.93 -0.28 2.19 16 32 H 0.06 1.10 6.22 -51.93 -0.32 0.78 16 33 H 0.13 1.66 6.01 -52.49 -0.32 1.35 16 34 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 37 H 0.12 1.80 4.11 -52.49 -0.22 1.59 16 38 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.13 2.48 6.43 -52.49 -0.34 2.15 16 LS Contribution 344.70 15.07 5.19 5.19 Total: -1.00 -26.23 344.70 -10.73 -36.96 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -3.39 Total: 15.75 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -6.25 Total: -7.15 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.16 Total: -48.99 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.23 -10.73 -36.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069973695.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.200 kcal (2) G-P(sol) polarization free energy of solvation -26.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds