Wall clock time and date at job start Tue Mar 31 2020 06:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99542 * 2 1 4 4 C 1.53001 * 109.47208 * 184.96262 * 3 2 1 5 5 N 1.46900 * 109.47178 * 64.21135 * 4 3 2 6 6 C 1.46894 * 110.99741 * 72.16085 * 5 4 3 7 7 C 1.53007 * 109.47015 * 200.28197 * 6 5 4 8 8 O 1.42897 * 109.47019 * 64.90423 * 7 6 5 9 9 C 1.42900 * 114.00030 * 174.38305 * 8 7 6 10 10 C 1.46899 * 111.00210 * 196.11814 * 5 4 3 11 11 C 1.50696 * 109.47403 * 63.87754 * 10 5 4 12 12 C 1.38112 * 120.03420 * 259.01279 * 11 10 5 13 13 C 1.38388 * 120.06063 * 179.97438 * 12 11 10 14 14 Cl 1.73599 * 119.94429 * 179.97438 * 13 12 11 15 15 C 1.38432 * 120.11011 * 0.02562 * 13 12 11 16 16 C 1.38072 * 120.05526 * 359.67979 * 15 13 12 17 17 C 1.38863 * 120.02643 * 78.98841 * 11 10 5 18 18 O 1.35767 * 120.05408 * 0.03011 * 17 11 10 19 19 C 1.34822 * 116.99619 * 186.54611 * 18 17 11 20 20 H 1.07998 * 120.00581 * 4.65314 * 19 18 17 21 21 C 1.38654 * 119.99760 * 184.64633 * 19 18 17 22 22 N 1.31562 * 119.99787 * 356.24009 * 21 19 18 23 23 Si 1.86804 * 120.00000 * 176.50795 * 21 19 18 24 24 H 1.48496 * 109.47265 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47003 * 120.00407 * 23 21 19 26 26 H 1.48497 * 109.47117 * 240.00345 * 23 21 19 27 27 H 1.08997 * 109.47325 * 64.96917 * 1 2 3 28 28 H 1.09006 * 109.46729 * 184.96667 * 1 2 3 29 29 H 1.08998 * 109.46947 * 304.96142 * 1 2 3 30 30 H 1.09003 * 109.47548 * 64.96628 * 3 2 1 31 31 H 1.09000 * 109.47512 * 304.96293 * 3 2 1 32 32 H 1.09006 * 109.46839 * 304.21256 * 4 3 2 33 33 H 1.09003 * 109.47565 * 184.21724 * 4 3 2 34 34 H 1.08999 * 109.47429 * 320.28163 * 6 5 4 35 35 H 1.08999 * 109.47182 * 80.28701 * 6 5 4 36 36 H 1.08999 * 109.46900 * 184.90324 * 7 6 5 37 37 H 1.09000 * 109.47202 * 304.90385 * 7 6 5 38 38 H 1.09000 * 109.46700 * 302.80803 * 9 8 7 39 39 H 1.09001 * 109.47104 * 62.81012 * 9 8 7 40 40 H 1.08995 * 109.47262 * 182.81068 * 9 8 7 41 41 H 1.09008 * 109.46782 * 303.88323 * 10 5 4 42 42 H 1.08997 * 109.47106 * 183.88546 * 10 5 4 43 43 H 1.08001 * 119.96828 * 359.97438 * 12 11 10 44 44 H 1.07996 * 119.96898 * 179.97438 * 15 13 12 45 45 H 1.07998 * 120.02704 * 180.32534 * 16 15 13 46 46 H 0.96997 * 119.99906 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5305 1.1870 -0.1248 5 7 3.8703 0.5926 -1.4245 6 6 3.6328 1.5452 -2.5172 7 6 3.5010 0.7839 -3.8378 8 8 2.3373 -0.0444 -3.7961 9 6 2.0496 -0.7051 -5.0301 10 6 5.2585 0.1125 -1.4370 11 6 5.4148 -0.9989 -0.4313 12 6 5.9860 -0.7420 0.7997 13 6 6.1293 -1.7620 1.7238 14 17 6.8482 -1.4359 3.2699 15 6 5.7013 -3.0423 1.4170 16 6 5.1241 -3.3030 0.1901 17 6 4.9842 -2.2821 -0.7413 18 8 4.4225 -2.5373 -1.9507 19 6 3.9039 -3.7677 -2.1372 20 1 3.8792 -4.4730 -1.3197 21 6 3.4019 -4.1275 -3.3786 22 7 3.3639 -3.2451 -4.3536 23 14 2.7729 -5.8631 -3.6644 24 1 2.9186 -6.6543 -2.4162 25 1 1.3406 -5.8126 -4.0536 26 1 3.5587 -6.5019 -4.7505 27 1 -0.3634 0.4348 -0.9311 28 1 -0.3633 -1.0239 0.0890 29 1 -0.3633 0.5889 0.8422 30 1 1.7607 1.8143 0.9311 31 1 1.6199 1.8770 -0.8422 32 1 3.9124 0.5532 0.6756 33 1 3.9795 2.1774 -0.0496 34 1 2.7138 2.0985 -2.3235 35 1 4.4693 2.2410 -2.5808 36 1 3.4120 1.4945 -4.6595 37 1 4.3839 0.1627 -3.9888 38 1 1.9369 0.0361 -5.8213 39 1 2.8673 -1.3813 -5.2794 40 1 1.1252 -1.2739 -4.9308 41 1 5.9289 0.9325 -1.1793 42 1 5.5052 -0.2598 -2.4313 43 1 6.3211 0.2559 1.0412 44 1 5.8146 -3.8367 2.1398 45 1 4.7856 -4.3008 -0.0467 46 1 3.0131 -3.4969 -5.2222 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069979576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:42 Heat of formation + Delta-G solvation = -79.056604 kcal Electronic energy + Delta-G solvation = -29963.379481 eV Core-core repulsion = 25881.001906 eV Total energy + Delta-G solvation = -4082.377575 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.138 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.37131 -38.01825 -36.93576 -36.68042 -35.92915 -35.22599 -32.24760 -31.34034 -30.28307 -28.86625 -27.79928 -25.90548 -25.63345 -25.03679 -24.27951 -22.24541 -21.57632 -21.02407 -19.75230 -17.96832 -16.96406 -16.14897 -16.00009 -15.62861 -15.33230 -15.25881 -14.85069 -14.49570 -14.45344 -14.41778 -13.85919 -13.72709 -13.47512 -13.28724 -13.05915 -12.75966 -12.24894 -12.13885 -12.02471 -11.93863 -11.74530 -11.52262 -11.36659 -11.10804 -11.00088 -10.91928 -10.80348 -10.69420 -10.42653 -10.34692 -10.26106 -10.19539 -10.03285 -9.30314 -9.11717 -8.74617 -8.54465 -8.16649 -7.58239 -7.07560 -6.38599 -3.92320 2.07602 2.23398 2.92192 3.14259 3.17413 3.20867 3.99880 4.21166 4.31645 4.64444 4.69717 5.17016 5.23870 5.34424 5.39749 5.52042 5.57333 5.60323 5.64920 5.71778 5.75800 5.76706 5.82764 5.86505 5.92670 5.98904 6.09220 6.11415 6.14723 6.22330 6.31306 6.38774 6.46325 6.54310 6.58369 6.78125 6.96632 7.01793 7.04300 7.26733 7.39821 7.59259 7.67689 7.70651 7.80580 8.04256 8.22150 9.06637 9.75769 10.74741 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008040 B = 0.005595 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3481.587581 B = 5003.026533 C = 6883.206682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.072 3.928 4 C 0.052 3.948 5 N -0.498 5.498 6 C 0.058 3.942 7 C 0.076 3.924 8 O -0.355 6.355 9 C 0.038 3.962 10 C 0.119 3.881 11 C -0.146 4.146 12 C -0.060 4.060 13 C -0.131 4.131 14 Cl -0.113 7.113 15 C -0.058 4.058 16 C -0.229 4.229 17 C 0.182 3.818 18 O -0.141 6.141 19 C -0.382 4.382 20 H 0.088 0.912 21 C 0.048 3.952 22 N -0.840 5.840 23 Si 0.933 3.067 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.278 1.278 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.027 0.973 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.029 0.971 37 H 0.052 0.948 38 H 0.003 0.997 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.024 0.976 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.133 0.867 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.490 8.315 3.942 9.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.273 6.273 3 C -0.005 4.005 4 C -0.076 4.076 5 N -0.221 5.221 6 C -0.070 4.070 7 C -0.002 4.002 8 O -0.273 6.273 9 C -0.059 4.059 10 C -0.008 4.008 11 C -0.148 4.148 12 C -0.080 4.080 13 C -0.158 4.158 14 Cl -0.085 7.085 15 C -0.077 4.077 16 C -0.249 4.249 17 C 0.125 3.875 18 O -0.041 6.041 19 C -0.458 4.458 20 H 0.105 0.895 21 C -0.157 4.157 22 N -0.474 5.474 23 Si 0.759 3.241 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.204 1.204 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.022 0.978 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.042 0.958 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.151 0.849 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.871 7.890 3.671 8.746 hybrid contribution 0.071 -0.018 -0.025 0.078 sum -0.800 7.872 3.646 8.712 Atomic orbital electron populations 1.22626 0.82544 1.02140 0.98763 1.88153 1.18051 1.26203 1.94925 1.22464 0.94008 0.85700 0.98351 1.22151 0.94109 0.97498 0.93799 1.61766 1.22690 1.36540 1.01153 1.22149 0.99954 0.93058 0.91859 1.22286 0.90578 0.92647 0.94651 1.87976 1.43583 1.62568 1.33162 1.22805 1.02777 0.95322 0.84970 1.20709 0.87508 0.93499 0.99066 1.18573 1.07819 0.92860 0.95537 1.20340 0.98631 0.97246 0.91752 1.20162 1.12122 0.95676 0.87835 1.98266 1.83398 1.95953 1.30858 1.20581 0.96564 0.94307 0.96271 1.21089 1.08513 1.00490 0.94763 1.19065 0.89728 0.91955 0.86734 1.84042 1.61143 1.33181 1.25721 1.21308 1.38185 0.88803 0.97514 0.89500 1.25126 0.96779 0.99139 0.94647 1.70024 1.42207 1.32718 1.02474 0.85761 0.78522 0.81078 0.78742 1.19317 1.20335 1.20418 0.94542 0.90116 0.95422 0.94298 0.93857 0.89332 0.94505 0.90949 0.94403 0.95265 0.92947 0.97820 0.89994 0.91616 0.95752 0.89574 0.86685 0.86814 0.84940 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 11.01 101.05 1.11 1.67 16 2 O -0.36 -6.85 10.64 -35.23 -0.37 -7.22 16 3 C 0.07 1.13 6.08 37.16 0.23 1.36 16 4 C 0.05 0.84 5.21 -3.82 -0.02 0.82 16 5 N -0.50 -9.09 4.28 -236.07 -1.01 -10.10 16 6 C 0.06 0.92 5.21 -3.82 -0.02 0.90 16 7 C 0.08 1.37 6.14 37.16 0.23 1.60 16 8 O -0.36 -7.65 10.65 -35.23 -0.38 -8.03 16 9 C 0.04 0.75 10.54 101.05 1.06 1.82 16 10 C 0.12 2.19 4.58 -4.98 -0.02 2.17 16 11 C -0.15 -2.94 4.54 -104.44 -0.47 -3.41 16 12 C -0.06 -1.08 8.14 -39.57 -0.32 -1.41 16 13 C -0.13 -2.38 6.32 -39.45 -0.25 -2.63 16 14 Cl -0.11 -1.79 28.95 -51.86 -1.50 -3.29 16 15 C -0.06 -1.10 9.82 -39.57 -0.39 -1.49 16 16 C -0.23 -4.92 9.13 -39.40 -0.36 -5.28 16 17 C 0.18 4.22 6.62 -39.11 -0.26 3.97 16 18 O -0.14 -3.72 9.02 0.02 0.00 -3.72 16 19 C -0.38 -10.11 9.44 30.89 0.29 -9.82 16 20 H 0.09 2.20 5.29 -52.49 -0.28 1.93 16 21 C 0.05 1.23 5.49 -17.51 -0.10 1.14 16 22 N -0.84 -21.83 11.03 55.48 0.61 -21.22 16 23 Si 0.93 19.85 29.55 -169.99 -5.02 14.82 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.65 6.44 -51.93 -0.33 0.32 16 32 H 0.09 1.56 5.81 -51.93 -0.30 1.26 16 33 H 0.04 0.50 8.05 -51.93 -0.42 0.08 16 34 H 0.07 1.10 6.21 -51.93 -0.32 0.78 16 35 H 0.04 0.52 7.99 -51.93 -0.41 0.10 16 36 H 0.03 0.45 8.13 -51.93 -0.42 0.03 16 37 H 0.05 1.05 6.71 -51.93 -0.35 0.70 16 38 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 39 H 0.08 1.79 5.59 -51.93 -0.29 1.50 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.02 0.39 7.99 -51.92 -0.41 -0.03 16 42 H 0.09 1.76 6.39 -51.93 -0.33 1.43 16 43 H 0.12 1.81 8.03 -52.49 -0.42 1.39 16 44 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 45 H 0.13 2.85 5.72 -52.49 -0.30 2.55 16 46 H 0.26 6.35 8.08 -40.82 -0.33 6.02 16 LS Contribution 387.04 15.07 5.83 5.83 Total: -1.00 -28.84 387.04 -7.81 -36.65 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.68 Total: 4.85 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 0.71 Total: -8.59 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: -0.40 Total: -31.31 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.75 Total: -18.97 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -1.50 Total: -3.29 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -28.84 -7.81 -36.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069979576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.404 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds