Wall clock time and date at job start Tue Mar 31 2020 07:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47253 * 2 1 4 4 N 1.31814 * 119.10674 * 89.99987 * 3 2 1 5 5 C 1.32297 * 120.68887 * 180.02562 * 4 3 2 6 6 C 1.38775 * 119.07968 * 359.97438 * 5 4 3 7 7 C 1.37950 * 118.63865 * 359.87538 * 6 5 4 8 8 N 1.31688 * 119.10849 * 270.00463 * 3 2 1 9 9 C 1.50435 * 121.85845 * 180.20968 * 7 6 5 10 10 N 1.46712 * 110.36709 * 342.62755 * 9 7 6 11 11 C 1.46901 * 111.00148 * 288.88977 * 10 9 7 12 12 C 1.52999 * 109.46863 * 306.89150 * 11 10 9 13 13 C 1.50706 * 109.47075 * 185.29084 * 12 11 10 14 14 O 1.21287 * 119.99621 * 359.97438 * 13 12 11 15 15 N 1.34768 * 119.99975 * 179.97438 * 13 12 11 16 16 C 1.37101 * 119.99854 * 179.97438 * 15 13 12 17 17 H 1.07994 * 120.00053 * 21.63907 * 16 15 13 18 18 C 1.38952 * 119.99802 * 201.63640 * 16 15 13 19 19 N 1.31408 * 120.00463 * 5.82865 * 18 16 15 20 20 Si 1.86804 * 119.99672 * 185.83592 * 18 16 15 21 21 H 1.48500 * 109.47373 * 59.99709 * 20 18 16 22 22 H 1.48496 * 109.46912 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46944 * 299.99562 * 20 18 16 24 24 C 1.46505 * 120.00158 * 0.02562 * 15 13 12 25 25 C 1.47198 * 109.47374 * 83.89338 * 24 15 13 26 26 N 5.78376 * 53.53212 * 303.08563 * 2 1 3 27 27 C 1.47152 * 110.39632 * 52.41363 * 10 9 7 28 28 C 1.50421 * 119.46282 * 179.83027 * 6 5 4 29 29 H 1.08998 * 109.47626 * 60.00195 * 1 2 3 30 30 H 1.09009 * 109.47326 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47232 * 299.99474 * 1 2 3 32 32 H 1.09006 * 109.46676 * 239.99792 * 2 1 3 33 33 H 1.09002 * 109.47058 * 120.00518 * 2 1 3 34 34 H 1.08002 * 120.45921 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.32152 * 222.35640 * 9 7 6 36 36 H 1.09006 * 109.17702 * 102.80651 * 9 7 6 37 37 H 1.09003 * 109.46896 * 66.88589 * 11 10 9 38 38 H 1.08996 * 109.47498 * 186.88981 * 11 10 9 39 39 H 1.08996 * 109.47188 * 305.29001 * 12 11 10 40 40 H 1.09004 * 109.47252 * 65.29268 * 12 11 10 41 41 H 0.97003 * 119.99995 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.47088 * 203.89205 * 24 15 13 43 43 H 1.09001 * 109.47064 * 323.89193 * 24 15 13 44 44 H 1.08998 * 109.61769 * 48.55027 * 27 10 9 45 45 H 1.09005 * 109.61168 * 169.08796 * 27 10 9 46 46 H 1.08996 * 109.42737 * 43.27609 * 28 6 5 47 47 H 1.09002 * 109.39887 * 283.49064 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2461 2.0253 1.1517 5 6 2.6864 3.2723 1.1882 6 6 2.9224 3.9395 -0.0055 7 6 2.6906 3.2745 -1.1917 8 7 2.2458 2.0248 -1.1506 9 6 2.9263 3.9265 -2.5268 10 7 3.0068 5.3836 -2.3763 11 6 1.6889 5.9546 -2.0676 12 6 0.6737 5.4887 -3.1131 13 6 -0.6459 6.1758 -2.8731 14 8 -0.7629 6.9606 -1.9557 15 7 -1.6959 5.9183 -3.6778 16 6 -2.8965 6.5431 -3.4591 17 1 -2.9306 7.4673 -2.9015 18 6 -4.0695 5.9870 -3.9549 19 7 -4.0443 4.8072 -4.5329 20 14 -5.6822 6.9169 -3.7997 21 1 -5.5740 8.2173 -4.5085 22 1 -6.7764 6.1137 -4.4020 23 1 -5.9783 7.1584 -2.3647 24 6 -1.5546 4.9700 -4.7855 25 6 -1.7519 3.5994 -4.2863 26 7 -1.9077 2.5391 -3.8971 27 6 3.9909 5.7388 -1.3415 28 6 3.4195 5.3589 0.0259 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.8599 3.7642 2.1339 35 1 2.1053 3.6782 -3.1993 36 1 3.8613 3.5551 -2.9465 37 1 1.3713 5.6220 -1.0793 38 1 1.7519 7.0426 -2.0819 39 1 1.0377 5.7388 -4.1096 40 1 0.5410 4.4096 -3.0351 41 1 -4.8632 4.4189 -4.8787 42 1 -2.3009 5.1895 -5.5491 43 1 -0.5572 5.0599 -5.2158 44 1 4.9180 5.1926 -1.5153 45 1 4.1835 6.8112 -1.3725 46 1 4.1979 5.4537 0.7830 47 1 2.5935 6.0264 0.2716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070038772.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:33 Heat of formation + Delta-G solvation = 56.184670 kcal Electronic energy + Delta-G solvation = -30710.174482 eV Core-core repulsion = 26700.679760 eV Total energy + Delta-G solvation = -4009.494722 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.61529 -39.25755 -38.35085 -35.76996 -34.56385 -34.27866 -33.85394 -32.58405 -31.81354 -30.31554 -29.75936 -27.46001 -26.35771 -25.25926 -24.57833 -23.58506 -22.91572 -21.99022 -19.72053 -18.87913 -17.96367 -17.88350 -16.83796 -16.49036 -16.31010 -15.72486 -15.36730 -15.18050 -14.80327 -14.62484 -14.23507 -14.08727 -13.94563 -13.90984 -13.52298 -13.34145 -12.97765 -12.96588 -12.63727 -12.43259 -12.19854 -12.02903 -11.89088 -11.71660 -11.59045 -11.44663 -11.31900 -11.21820 -11.16324 -11.09985 -10.74186 -10.57501 -10.50405 -10.45422 -10.39921 -10.30062 -9.40067 -9.25931 -9.14337 -8.64092 -8.43247 -8.05463 -6.46579 -4.07511 0.82661 1.01596 3.11740 3.20060 3.22006 3.54361 3.60918 3.70203 3.79134 3.85745 4.00605 4.02367 4.12430 4.39611 4.58908 4.64957 4.78224 4.87542 4.92658 4.95560 5.12134 5.18622 5.21392 5.25307 5.27104 5.35863 5.40063 5.45662 5.58095 5.61626 5.67357 5.71753 5.80539 5.82569 5.82772 5.98391 6.04132 6.10546 6.23230 6.25180 6.30218 6.40259 6.69543 6.79723 6.91740 7.04320 7.43213 7.89535 8.08632 8.26933 8.77659 8.98023 9.17186 9.70476 10.56547 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.011400 B = 0.003732 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.593640 B = 7500.195943 C = 8755.860614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C 0.317 3.683 4 N -0.519 5.519 5 C 0.152 3.848 6 C -0.191 4.191 7 C 0.153 3.847 8 N -0.506 5.506 9 C 0.090 3.910 10 N -0.520 5.520 11 C 0.066 3.934 12 C -0.139 4.139 13 C 0.460 3.540 14 O -0.576 6.576 15 N -0.445 5.445 16 C -0.305 4.305 17 H 0.105 0.895 18 C 0.030 3.970 19 N -0.891 5.891 20 Si 0.934 3.066 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.274 1.274 24 C 0.220 3.780 25 C 0.247 3.753 26 N -0.477 5.477 27 C 0.052 3.948 28 C -0.112 4.112 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.166 0.834 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.045 0.955 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.274 0.726 42 H 0.140 0.860 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.780 -2.263 3.305 16.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.091 4.091 3 C 0.049 3.951 4 N -0.233 5.233 5 C -0.015 4.015 6 C -0.196 4.196 7 C 0.006 3.994 8 N -0.220 5.220 9 C -0.039 4.039 10 N -0.241 5.241 11 C -0.061 4.061 12 C -0.179 4.179 13 C 0.248 3.752 14 O -0.459 6.459 15 N -0.165 5.165 16 C -0.432 4.432 17 H 0.123 0.877 18 C -0.172 4.172 19 N -0.532 5.532 20 Si 0.761 3.239 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.199 1.199 24 C 0.093 3.907 25 C -0.071 4.071 26 N -0.158 5.158 27 C -0.076 4.076 28 C -0.151 4.151 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.183 0.817 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.158 0.842 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.109 0.891 46 H 0.103 0.897 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.150 -4.261 3.756 16.180 hybrid contribution -1.036 1.102 0.801 1.712 sum 14.114 -3.158 4.557 15.164 Atomic orbital electron populations 1.21697 0.93250 1.02493 1.02923 1.20331 0.97018 0.87980 1.03794 1.23205 0.91177 0.97291 0.83413 1.68244 1.13958 1.10527 1.30570 1.23149 0.90621 0.89793 0.97954 1.21100 1.04272 0.99164 0.95017 1.22285 0.90052 0.89994 0.97049 1.68236 1.13319 1.09990 1.30500 1.21273 1.04553 0.86831 0.91264 1.62823 1.08820 1.07965 1.44540 1.21953 0.86061 1.00771 0.97349 1.21690 0.94328 1.00841 1.01053 1.20067 0.85819 0.85986 0.83305 1.90534 1.84613 1.38778 1.32007 1.43581 1.10557 1.37308 1.25067 1.19697 0.82092 1.06412 1.35033 0.87694 1.25338 0.99710 0.95507 0.96661 1.69707 1.29366 1.15032 1.39068 0.85856 0.80259 0.78956 0.78841 1.19669 1.20911 1.19927 1.18883 1.01822 0.78503 0.91508 1.29560 0.90089 0.94487 0.93005 1.81086 1.12239 1.13916 1.08514 1.22261 0.95251 1.02350 0.87713 1.21024 1.01933 0.91560 1.00604 0.91771 0.91467 0.92481 0.89289 0.89496 0.81665 0.87230 0.87979 0.93722 0.89066 0.88800 0.90474 0.91539 0.84230 0.90404 0.90278 0.89118 0.89702 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.89 37.16 0.37 -1.55 16 2 C -0.05 -0.65 6.37 -27.88 -0.18 -0.83 16 3 C 0.32 4.82 6.89 -157.27 -1.08 3.73 16 4 N -0.52 -7.71 10.34 -10.71 -0.11 -7.83 16 5 C 0.15 1.96 10.98 -17.15 -0.19 1.77 16 6 C -0.19 -2.47 5.08 -104.66 -0.53 -3.00 16 7 C 0.15 2.21 6.26 -82.45 -0.52 1.69 16 8 N -0.51 -8.06 10.24 -7.17 -0.07 -8.14 16 9 C 0.09 1.13 5.53 -5.21 -0.03 1.10 16 10 N -0.52 -6.30 5.11 -236.18 -1.21 -7.51 16 11 C 0.07 1.00 3.79 -3.82 -0.01 0.99 16 12 C -0.14 -2.35 3.68 -27.88 -0.10 -2.45 16 13 C 0.46 10.23 7.56 -10.99 -0.08 10.14 16 14 O -0.58 -14.66 15.60 5.55 0.09 -14.57 16 15 N -0.44 -10.30 2.60 -117.93 -0.31 -10.61 16 16 C -0.31 -7.80 9.33 -14.93 -0.14 -7.94 16 17 H 0.11 2.81 7.37 -52.49 -0.39 2.42 16 18 C 0.03 0.74 5.21 -17.47 -0.09 0.65 16 19 N -0.89 -22.28 8.86 55.50 0.49 -21.79 16 20 Si 0.93 19.92 29.56 -169.99 -5.02 14.90 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 C 0.22 4.39 4.90 -6.83 -0.03 4.35 16 25 C 0.25 5.50 12.99 -20.62 -0.27 5.23 16 26 N -0.48 -11.46 18.57 42.32 0.79 -10.68 16 27 C 0.05 0.50 6.06 -3.69 -0.02 0.48 16 28 C -0.11 -1.12 5.20 -28.02 -0.15 -1.26 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.11 1.51 5.69 -51.93 -0.30 1.22 16 36 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.04 0.76 5.43 -51.93 -0.28 0.48 16 38 H 0.09 1.42 7.94 -51.93 -0.41 1.00 16 39 H 0.09 1.35 7.42 -51.93 -0.39 0.97 16 40 H 0.08 1.37 5.76 -51.93 -0.30 1.07 16 41 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 42 H 0.14 2.89 6.22 -51.93 -0.32 2.57 16 43 H 0.08 1.19 6.70 -51.93 -0.35 0.85 16 44 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.09 1.01 6.79 -51.93 -0.35 0.66 16 LS Contribution 380.81 15.07 5.74 5.74 Total: -1.00 -32.11 380.81 -9.12 -41.24 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.44 Total: 6.14 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: -3.06 Total: 13.11 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -0.42 Total: -66.55 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.09 Total: -14.57 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.11 -9.12 -41.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070038772.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.420 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds