Wall clock time and date at job start Tue Mar 31 2020 05:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39957 * 125.81888 * 2 1 4 4 C 1.35280 * 107.96859 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.19194 * 179.97438 * 4 3 2 6 6 N 1.35844 * 107.61783 * 359.97438 * 4 3 2 7 7 C 1.39832 * 126.10030 * 179.97438 * 6 4 3 8 8 C 1.39054 * 119.92692 * 325.25370 * 7 6 4 9 9 C 1.37721 * 120.07988 * 180.25276 * 8 7 6 10 10 C 1.39711 * 119.91727 * 359.49875 * 9 8 7 11 11 C 1.47674 * 120.07777 * 180.23043 * 10 9 8 12 12 O 1.21581 * 119.99519 * 317.44293 * 11 10 9 13 13 N 1.34771 * 120.00019 * 137.43736 * 11 10 9 14 14 C 1.46505 * 119.99628 * 212.59187 * 13 11 10 15 15 C 1.50703 * 109.46675 * 90.00462 * 14 13 11 16 16 H 1.07997 * 120.00502 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99517 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00169 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99736 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47314 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47098 * 119.99882 * 19 17 15 22 22 H 1.48505 * 109.46980 * 239.99732 * 19 17 15 23 23 C 1.46497 * 120.00123 * 32.59637 * 13 11 10 24 24 C 1.53006 * 109.47100 * 301.41404 * 23 13 11 25 25 C 1.52994 * 109.47214 * 61.41321 * 23 13 11 26 26 C 1.39704 * 119.84840 * 0.25293 * 10 9 8 27 27 C 1.37725 * 119.92165 * 359.97438 * 26 10 9 28 28 N 1.30831 * 125.81494 * 180.35174 * 2 1 3 29 29 H 1.09001 * 109.47375 * 89.99813 * 1 2 3 30 30 H 1.08998 * 109.47369 * 210.00155 * 1 2 3 31 31 H 1.09003 * 109.47209 * 330.00356 * 1 2 3 32 32 H 1.07999 * 126.01617 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47730 * 270.02829 * 5 4 3 34 34 H 1.09002 * 109.47381 * 30.02989 * 5 4 3 35 35 H 1.09003 * 109.47328 * 150.02267 * 5 4 3 36 36 H 1.08000 * 119.95811 * 0.02632 * 8 7 6 37 37 H 1.07996 * 120.04236 * 179.77081 * 9 8 7 38 38 H 1.09007 * 109.46847 * 210.00021 * 14 13 11 39 39 H 1.08991 * 109.47208 * 330.00152 * 14 13 11 40 40 H 0.97000 * 120.00339 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.47131 * 181.42048 * 23 13 11 42 42 H 1.09006 * 109.46621 * 13.46301 * 24 23 13 43 43 H 1.08997 * 109.47208 * 133.46192 * 24 23 13 44 44 H 1.09004 * 109.46877 * 253.46510 * 24 23 13 45 45 H 1.09001 * 109.47154 * 103.88604 * 25 23 13 46 46 H 1.09005 * 109.47089 * 223.88260 * 25 23 13 47 47 H 1.09000 * 109.47374 * 343.88521 * 25 23 13 48 48 H 1.07999 * 120.04259 * 180.02562 * 26 10 9 49 49 H 1.08002 * 119.96352 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3260 1.1349 0.0000 4 6 3.6137 0.7202 -0.0006 5 6 4.8336 1.6051 -0.0013 6 7 3.6082 -0.6382 -0.0003 7 6 4.7347 -1.4667 -0.0013 8 6 5.8796 -1.0801 -0.6893 9 6 6.9890 -1.8960 -0.6966 10 6 6.9668 -3.1086 -0.0030 11 6 8.1562 -3.9838 -0.0043 12 8 8.7791 -4.1615 -1.0332 13 7 8.5513 -4.5856 1.1351 14 6 9.9751 -4.8310 1.3781 15 6 10.5740 -3.6471 2.0928 16 1 9.9562 -2.7968 2.3407 17 6 11.9112 -3.6492 2.4291 18 7 12.6637 -4.6845 2.1267 19 14 12.6535 -2.1821 3.3156 20 1 11.6038 -1.1558 3.5391 21 1 13.2042 -2.6205 4.6231 22 1 13.7428 -1.6034 2.4886 23 6 7.5572 -4.9942 2.1305 24 6 6.7579 -3.7712 2.5850 25 6 6.6082 -6.0222 1.5113 26 6 5.8167 -3.4914 0.6914 27 6 4.7092 -2.6727 0.6906 28 7 2.2725 -1.0609 -0.0065 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.9893 2.1610 0.0004 33 1 5.1269 1.8187 -1.0291 34 1 4.6055 2.5387 0.5129 35 1 5.6507 1.0980 0.5118 36 1 5.8975 -0.1405 -1.2216 37 1 7.8766 -1.5969 -1.2342 38 1 10.0900 -5.7233 1.9937 39 1 10.4860 -4.9778 0.4267 40 1 13.6043 -4.6862 2.3637 41 1 8.0629 -5.4370 2.9885 42 1 6.9442 -2.9415 1.9028 43 1 5.6947 -4.0110 2.5837 44 1 7.0658 -3.4897 3.5920 45 1 6.8620 -7.0173 1.8767 46 1 5.5818 -5.7835 1.7903 47 1 6.7047 -5.9982 0.4258 48 1 5.7962 -4.4279 1.2290 49 1 3.8195 -2.9682 1.2269 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071185230.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:23 Heat of formation + Delta-G solvation = 147.257083 kcal Electronic energy + Delta-G solvation = -30088.274731 eV Core-core repulsion = 26213.581028 eV Total energy + Delta-G solvation = -3874.693704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.81661 -40.88668 -38.08512 -36.56093 -34.41126 -33.26774 -32.53601 -31.85711 -30.51875 -30.38534 -28.07546 -27.33470 -27.12146 -26.69255 -23.83480 -23.29403 -22.24468 -21.78367 -20.40633 -19.78977 -18.65465 -17.75319 -16.66272 -16.37118 -16.12311 -15.58617 -15.37404 -14.93369 -14.78777 -14.29927 -14.18836 -14.10137 -13.79944 -13.72182 -13.69178 -13.56259 -13.22449 -13.01329 -12.79878 -12.57094 -12.31274 -12.30093 -12.24465 -12.04624 -11.82006 -11.73417 -11.28164 -11.14809 -10.98537 -10.89588 -10.68955 -10.66639 -10.35273 -10.17769 -9.69519 -9.66942 -9.22982 -9.00835 -8.64158 -8.51364 -8.03287 -7.63779 -6.11306 -4.17912 0.65187 1.36042 1.82569 2.23544 2.51477 3.08429 3.23927 3.31950 3.35212 3.66347 3.88561 4.33446 4.36290 4.37207 4.69595 4.78243 4.84919 4.89472 4.94939 5.07706 5.15078 5.21078 5.22644 5.24482 5.30867 5.33303 5.34675 5.42698 5.53491 5.57560 5.59769 5.66305 5.73540 5.78442 5.82544 5.92626 5.94874 6.12898 6.14342 6.21465 6.29924 6.39572 6.49358 6.51496 6.60779 7.03628 7.10583 7.37155 7.52393 7.53524 7.86445 8.15126 8.32763 8.72609 8.92607 9.48151 10.95951 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015049 B = 0.002963 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.195034 B = 9448.699661 C =10309.724612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.075 3.925 3 C -0.267 4.267 4 C 0.090 3.910 5 C -0.100 4.100 6 N -0.322 5.322 7 C 0.172 3.828 8 C -0.157 4.157 9 C -0.041 4.041 10 C -0.145 4.145 11 C 0.572 3.428 12 O -0.528 6.528 13 N -0.607 5.607 14 C 0.248 3.752 15 C -0.534 4.534 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.897 3.103 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.136 3.864 24 C -0.201 4.201 25 C -0.181 4.181 26 C -0.069 4.069 27 C -0.152 4.152 28 N -0.287 5.287 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.150 0.850 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.033 0.967 39 H 0.045 0.955 40 H 0.264 0.736 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.183 0.817 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.481 8.823 -1.249 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 C -0.296 4.296 4 C -0.033 4.033 5 C -0.158 4.158 6 N -0.098 5.098 7 C 0.080 3.920 8 C -0.178 4.178 9 C -0.060 4.060 10 C -0.149 4.149 11 C 0.359 3.641 12 O -0.405 6.405 13 N -0.340 5.340 14 C 0.129 3.871 15 C -0.573 4.573 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.724 3.276 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.208 1.208 23 C 0.031 3.969 24 C -0.258 4.258 25 C -0.239 4.239 26 C -0.087 4.087 27 C -0.172 4.172 28 N -0.107 5.107 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.168 0.832 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.199 0.801 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.818 7.324 -1.776 22.140 hybrid contribution 0.527 1.820 0.667 2.009 sum -20.291 9.144 -1.109 22.284 Atomic orbital electron populations 1.20185 0.86417 1.03369 1.03031 1.22454 0.97094 0.90762 0.98919 1.21141 0.90775 0.99860 1.17793 1.21388 0.97611 0.83859 1.00470 1.20665 0.93400 0.98151 1.03603 1.45835 1.04157 1.03504 1.56319 1.17556 0.84207 0.91684 0.98524 1.20853 0.92704 1.01977 1.02234 1.20999 0.97700 0.92079 0.95252 1.20437 0.95923 0.97351 1.01214 1.17916 0.83160 0.79275 0.83718 1.90725 1.56729 1.61706 1.31330 1.48023 1.09217 1.59641 1.17115 1.19364 0.73185 0.96625 0.97915 1.21553 0.94555 1.03186 1.37963 0.92232 1.24947 0.96893 0.96283 0.95891 1.69944 1.06811 1.29494 1.46745 0.86464 0.79218 0.82579 0.79310 1.19755 1.20881 1.20849 1.21024 0.89748 0.93728 0.92371 1.23736 0.99014 1.00209 1.02804 1.22734 0.98559 1.00349 1.02214 1.22952 0.90586 1.02576 0.92581 1.20739 0.99506 0.94410 1.02558 1.77439 0.85475 1.22482 1.25315 0.90450 0.90827 0.90340 0.83212 0.89788 0.89471 0.90163 0.84964 0.84262 0.94859 0.93657 0.92664 0.88319 0.88747 0.91242 0.92166 0.91281 0.91271 0.91589 0.80083 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.44 36.00 0.38 -0.14 16 2 C 0.07 0.85 7.21 -82.38 -0.59 0.25 16 3 C -0.27 -2.79 10.65 -39.99 -0.43 -3.22 16 4 C 0.09 1.03 6.77 -81.87 -0.55 0.48 16 5 C -0.10 -0.83 8.59 36.01 0.31 -0.52 16 6 N -0.32 -4.40 3.74 -6.84 -0.03 -4.42 16 7 C 0.17 2.40 6.29 -83.60 -0.53 1.88 16 8 C -0.16 -2.10 8.27 -39.47 -0.33 -2.43 16 9 C -0.04 -0.63 9.65 -39.22 -0.38 -1.01 16 10 C -0.15 -2.47 4.27 -104.95 -0.45 -2.91 16 11 C 0.57 12.00 5.85 -12.41 -0.07 11.93 16 12 O -0.53 -13.00 16.80 5.29 0.09 -12.91 16 13 N -0.61 -12.63 2.38 -168.64 -0.40 -13.03 16 14 C 0.25 6.31 5.32 -5.19 -0.03 6.28 16 15 C -0.53 -14.53 9.39 -34.44 -0.32 -14.85 16 16 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 19 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.14 2.18 3.27 -67.93 -0.22 1.96 16 24 C -0.20 -2.85 7.72 37.16 0.29 -2.57 16 25 C -0.18 -2.32 8.36 37.15 0.31 -2.01 16 26 C -0.07 -0.98 4.87 -39.22 -0.19 -1.17 16 27 C -0.15 -2.07 9.49 -39.46 -0.37 -2.44 16 28 N -0.29 -4.02 12.33 33.69 0.42 -3.60 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.08 0.59 7.74 -51.93 -0.40 0.18 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.73 6.89 -51.93 -0.36 0.38 16 36 H 0.13 1.46 6.06 -52.49 -0.32 1.14 16 37 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.03 0.86 7.93 -51.93 -0.41 0.45 16 39 H 0.05 1.31 7.36 -51.93 -0.38 0.92 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.10 1.60 7.81 -51.93 -0.41 1.19 16 42 H 0.09 1.52 4.00 -61.45 -0.25 1.27 16 43 H 0.07 0.78 5.24 -51.93 -0.27 0.51 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 0.69 6.17 -51.93 -0.32 0.37 16 47 H 0.07 0.96 6.82 -51.93 -0.35 0.60 16 48 H 0.18 2.31 1.06 -53.89 -0.06 2.25 16 49 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -33.67 387.49 -8.52 -42.19 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.88 Total: 3.76 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -3.28 Total: -8.87 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.73 Total: -46.16 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.67 -8.52 -42.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071185230.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.448 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds