Wall clock time and date at job start Tue Mar 31 2020 06:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46961 * 2 1 4 4 N 1.46501 * 109.47020 * 119.99513 * 2 1 3 5 5 C 1.46503 * 120.00474 * 300.00596 * 4 2 1 6 6 C 1.50699 * 109.46975 * 270.00247 * 5 4 2 7 7 H 1.08005 * 119.99801 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00348 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99456 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00229 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47323 * 59.99979 * 10 8 6 12 12 H 1.48504 * 109.46830 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47291 * 299.99335 * 10 8 6 14 14 C 1.34780 * 119.99785 * 120.00237 * 4 2 1 15 15 O 1.21282 * 119.99729 * 180.02562 * 14 4 2 16 16 C 1.50698 * 119.99924 * 0.02562 * 14 4 2 17 17 C 1.53003 * 109.46947 * 182.55304 * 16 14 4 18 18 H 1.09004 * 109.47332 * 53.81493 * 17 16 14 19 19 C 1.50699 * 109.47000 * 293.81375 * 17 16 14 20 20 C 1.38231 * 120.00121 * 299.72743 * 19 17 16 21 21 C 1.38233 * 120.00030 * 179.81027 * 20 19 17 22 22 C 1.38236 * 119.99884 * 0.39769 * 21 20 19 23 23 C 1.38232 * 119.99939 * 359.85448 * 22 21 20 24 24 C 1.38236 * 119.99636 * 120.00369 * 19 17 16 25 25 C 1.53004 * 109.46944 * 173.81445 * 17 16 14 26 26 F 1.39902 * 109.46631 * 173.97170 * 25 17 16 27 27 F 1.39895 * 109.47009 * 293.97035 * 25 17 16 28 28 F 1.39901 * 109.47162 * 53.97356 * 25 17 16 29 29 H 1.08997 * 109.47514 * 299.99748 * 1 2 3 30 30 H 1.09000 * 109.47100 * 60.00159 * 1 2 3 31 31 H 1.09007 * 109.47043 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47358 * 239.99737 * 2 1 3 33 33 H 1.09003 * 109.47410 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47084 * 299.99851 * 3 2 1 35 35 H 1.09004 * 109.47378 * 59.99478 * 3 2 1 36 36 H 1.09008 * 109.46831 * 29.99356 * 5 4 2 37 37 H 1.08990 * 109.47693 * 149.99739 * 5 4 2 38 38 H 0.97005 * 119.99980 * 180.02562 * 9 8 6 39 39 H 1.08997 * 109.46790 * 62.55475 * 16 14 4 40 40 H 1.09001 * 109.47244 * 302.55302 * 16 14 4 41 41 H 1.08001 * 120.00402 * 359.97438 * 20 19 17 42 42 H 1.08000 * 120.00237 * 180.22620 * 21 20 19 43 43 H 1.08006 * 119.99971 * 179.82991 * 22 21 20 44 44 H 1.08000 * 120.00113 * 179.97438 * 23 22 21 45 45 H 1.07994 * 120.00262 * 359.97415 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6643 -0.1900 2.5269 6 6 2.7029 0.8020 2.9831 7 1 3.5429 1.0359 2.3458 8 6 2.5815 1.4102 4.2144 9 7 1.5588 1.1249 4.9907 10 14 3.8693 2.6393 4.7802 11 1 3.9247 3.7738 3.8237 12 1 3.5104 3.1467 6.1289 13 1 5.1961 1.9750 4.8377 14 6 2.7932 -1.7863 1.0726 15 8 3.1970 -2.3582 2.0630 16 6 3.1577 -2.3009 -0.2961 17 6 3.9841 -3.5810 -0.1562 18 1 3.4446 -4.2957 0.4653 19 6 5.3083 -3.2564 0.4857 20 6 6.1747 -2.3704 -0.1270 21 6 7.3877 -2.0697 0.4637 22 6 7.7379 -2.6612 1.6631 23 6 6.8738 -3.5511 2.2731 24 6 5.6591 -3.8490 1.6843 25 6 4.2233 -4.1873 -1.5405 26 9 5.0916 -5.2785 -1.4278 27 9 3.0049 -4.6146 -2.0792 28 9 4.7920 -3.2234 -2.3799 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 0.6902 0.2975 2.4844 37 1 1.6236 -1.0224 3.2292 38 1 1.4731 1.5531 5.8569 39 1 3.7420 -1.5471 -0.8238 40 1 2.2485 -2.5149 -0.8578 41 1 5.9028 -1.9112 -1.0659 42 1 8.0630 -1.3747 -0.0131 43 1 8.6869 -2.4283 2.1233 44 1 7.1475 -4.0136 3.2099 45 1 4.9840 -4.5442 2.1609 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071796430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:04 Heat of formation + Delta-G solvation = -170.642887 kcal Electronic energy + Delta-G solvation = -31974.880491 eV Core-core repulsion = 27349.107545 eV Total energy + Delta-G solvation = -4625.772945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.17564 -47.66422 -47.61633 -39.81647 -38.70700 -36.11438 -34.50352 -32.81417 -30.89951 -30.70415 -29.83131 -28.01225 -26.78914 -26.21869 -23.55899 -22.71291 -22.38238 -21.42832 -20.74659 -18.70832 -18.54007 -17.78332 -17.65374 -16.75641 -16.44665 -16.09922 -15.54236 -15.18852 -14.71238 -14.58852 -14.43420 -14.33389 -14.16431 -14.04781 -13.82296 -13.77010 -13.51733 -13.32141 -13.23576 -13.07836 -12.84625 -12.46786 -12.30035 -12.20410 -11.84136 -11.67385 -11.54634 -11.54348 -11.18773 -10.95002 -10.87204 -10.85943 -10.78853 -10.57005 -10.38617 -10.02814 -9.56261 -9.00576 -8.68745 -8.53349 -8.41787 -7.66847 -6.03616 -4.06511 1.43396 1.64290 2.70428 3.30736 3.33881 3.35692 3.41081 3.58685 3.77359 3.95052 4.11347 4.12812 4.45193 4.70046 4.77137 4.93270 5.11206 5.17236 5.22957 5.26365 5.30841 5.37216 5.45416 5.55580 5.60799 5.63700 5.72240 5.83236 5.99463 6.11378 6.13896 6.22233 6.24835 6.35074 6.57682 6.60393 6.69267 6.73622 6.94324 7.08990 7.17022 7.45555 7.54851 7.93060 8.25206 8.40827 8.90151 9.06381 9.57473 11.04526 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.010918 B = 0.004595 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.883782 B = 6092.230071 C = 7614.778827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 C -0.157 4.157 4 N -0.590 5.590 5 C 0.248 3.752 6 C -0.517 4.517 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.511 3.489 15 O -0.530 6.530 16 C -0.142 4.142 17 C -0.072 4.072 18 H 0.128 0.872 19 C -0.080 4.080 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.113 4.113 23 C -0.122 4.122 24 C -0.064 4.064 25 C 0.457 3.543 26 F -0.179 7.179 27 F -0.183 7.183 28 F -0.181 7.181 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.034 0.966 37 H 0.041 0.959 38 H 0.263 0.737 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.932 -8.115 -14.131 17.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.215 4.215 4 N -0.322 5.322 5 C 0.129 3.871 6 C -0.556 4.556 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.535 5.535 10 Si 0.721 3.279 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.297 3.703 15 O -0.407 6.407 16 C -0.182 4.182 17 C -0.092 4.092 18 H 0.146 0.854 19 C -0.080 4.080 20 C -0.131 4.131 21 C -0.141 4.141 22 C -0.131 4.131 23 C -0.140 4.140 24 C -0.082 4.082 25 C 0.403 3.597 26 F -0.160 7.160 27 F -0.165 7.165 28 F -0.162 7.162 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.046 -8.371 -13.436 16.616 hybrid contribution 0.648 0.832 0.152 1.066 sum 5.694 -7.539 -13.284 16.301 Atomic orbital electron populations 1.22158 0.95504 1.01818 1.02519 1.21016 0.94190 0.94239 0.87864 1.22137 1.01355 0.95645 1.02350 1.48292 1.48959 1.26261 1.08727 1.19226 0.95844 0.94954 0.77056 1.21378 1.08808 1.23368 1.02018 0.92500 1.24900 0.95681 0.97101 0.96362 1.69919 1.29507 1.43387 1.10717 0.86642 0.82157 0.81353 0.77781 1.20303 1.21268 1.20275 1.19794 0.79511 0.81406 0.89593 1.90687 1.52808 1.58081 1.39144 1.21826 1.00909 0.96253 0.99242 1.21147 0.97463 1.00007 0.90546 0.85421 1.19067 0.93099 0.99197 0.96678 1.21094 0.94362 0.97501 1.00108 1.21001 0.96783 1.00166 0.96179 1.21143 0.99566 0.96873 0.95567 1.21093 0.94412 0.98751 0.99739 1.20902 0.95491 0.98218 0.93624 1.20563 0.73825 0.76532 0.88762 1.93187 1.70484 1.56073 1.96279 1.93177 1.44742 1.90457 1.88097 1.93136 1.85262 1.63397 1.74451 0.91256 0.92237 0.92895 0.90863 0.92761 0.93248 0.90022 0.94821 0.94066 0.92777 0.88077 0.88302 0.85824 0.86215 0.86335 0.86067 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.17 37.16 0.34 -1.94 16 2 C 0.13 2.05 3.16 -67.93 -0.21 1.84 16 3 C -0.16 -2.52 8.47 37.16 0.31 -2.20 16 4 N -0.59 -11.75 2.39 -167.47 -0.40 -12.15 16 5 C 0.25 6.17 4.60 -5.19 -0.02 6.15 16 6 C -0.52 -14.02 7.83 -34.44 -0.27 -14.29 16 7 H 0.06 1.56 7.63 -52.48 -0.40 1.16 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 10 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.51 9.84 7.45 -10.98 -0.08 9.76 16 15 O -0.53 -12.07 13.76 5.56 0.08 -11.99 16 16 C -0.14 -1.99 3.10 -27.88 -0.09 -2.08 16 17 C -0.07 -0.97 1.73 -91.77 -0.16 -1.13 16 18 H 0.13 1.71 7.69 -51.93 -0.40 1.31 16 19 C -0.08 -1.20 3.35 -104.63 -0.35 -1.56 16 20 C -0.11 -1.61 8.44 -39.59 -0.33 -1.95 16 21 C -0.12 -1.69 10.05 -39.58 -0.40 -2.08 16 22 C -0.11 -1.55 10.05 -39.58 -0.40 -1.95 16 23 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 24 C -0.06 -0.99 8.64 -39.58 -0.34 -1.33 16 25 C 0.46 5.62 2.66 37.16 0.10 5.72 16 26 F -0.18 -2.31 16.87 2.25 0.04 -2.28 16 27 F -0.18 -2.19 16.94 2.25 0.04 -2.16 16 28 F -0.18 -2.19 14.42 2.25 0.03 -2.16 16 29 H 0.07 1.12 6.66 -51.93 -0.35 0.78 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.07 0.94 5.76 -51.93 -0.30 0.64 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.56 6.92 -51.93 -0.36 1.20 16 36 H 0.03 0.85 6.43 -51.92 -0.33 0.52 16 37 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.10 1.32 6.69 -51.93 -0.35 0.97 16 40 H 0.10 1.16 7.34 -51.93 -0.38 0.78 16 41 H 0.12 1.59 5.96 -52.49 -0.31 1.27 16 42 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 43 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 44 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.12 1.82 7.95 -52.49 -0.42 1.40 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -31.18 374.21 -7.33 -38.52 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.08 Total: 2.91 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -2.40 Total: -7.59 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.34 Total: -37.52 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 0.11 Total: -6.59 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.18 -7.33 -38.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071796430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.126 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds