Wall clock time and date at job start Tue Mar 31 2020 05:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.57007 * 2 1 4 4 C 1.54527 * 109.57093 * 239.75351 * 2 1 3 5 5 C 1.45875 * 111.67024 * 162.93899 * 4 2 1 6 6 C 1.53986 * 112.66246 * 61.50430 * 5 4 2 7 7 N 1.44302 * 108.31780 * 278.60073 * 6 5 4 8 8 C 1.46899 * 110.99804 * 221.34852 * 7 6 5 9 9 C 1.50704 * 109.47141 * 66.04528 * 8 7 6 10 10 N 1.29828 * 118.35151 * 0.29689 * 9 8 7 11 11 C 1.35627 * 121.62535 * 180.27994 * 10 9 8 12 12 C 1.39633 * 121.61870 * 179.68889 * 11 10 9 13 13 C 1.37719 * 119.69295 * 180.02562 * 12 11 10 14 14 C 1.38876 * 120.82401 * 359.97438 * 13 12 11 15 15 C 1.37795 * 120.57282 * 0.04219 * 14 13 12 16 16 C 1.39366 * 119.51786 * 359.95735 * 15 14 13 17 17 C 1.46964 * 121.90806 * 179.97438 * 16 15 14 18 18 O 1.21720 * 121.28812 * 0.04520 * 17 16 15 19 19 N 1.35346 * 117.42398 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.71527 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99575 * 140.21507 * 20 19 17 22 22 C 1.39077 * 120.00065 * 320.21725 * 20 19 17 23 23 N 1.31252 * 119.99653 * 150.89212 * 22 20 19 24 24 Si 1.86798 * 119.99953 * 330.89052 * 22 20 19 25 25 H 1.48493 * 109.47159 * 270.00380 * 24 22 20 26 26 H 1.48508 * 109.46990 * 29.99972 * 24 22 20 27 27 H 1.48496 * 109.47325 * 149.99922 * 24 22 20 28 28 C 1.47941 * 113.65274 * 95.39402 * 7 6 5 29 29 C 1.50538 * 109.57416 * 120.37633 * 2 1 3 30 30 H 1.09004 * 109.46810 * 180.24209 * 1 2 3 31 31 H 1.09003 * 109.47237 * 300.24274 * 1 2 3 32 32 H 1.08997 * 109.47401 * 60.24876 * 1 2 3 33 33 H 1.09001 * 109.03523 * 42.38220 * 4 2 1 34 34 H 1.08996 * 109.04417 * 283.50436 * 4 2 1 35 35 H 1.09004 * 108.85175 * 300.68432 * 5 4 2 36 36 H 1.08997 * 108.84532 * 182.32117 * 5 4 2 37 37 H 1.09003 * 109.70058 * 158.88977 * 6 5 4 38 38 H 1.09008 * 109.69437 * 38.30218 * 6 5 4 39 39 H 1.08997 * 109.47356 * 306.03992 * 8 7 6 40 40 H 1.08998 * 109.46879 * 186.04204 * 8 7 6 41 41 H 1.07999 * 120.15312 * 359.97438 * 12 11 10 42 42 H 1.07997 * 119.58581 * 180.02562 * 13 12 11 43 43 H 1.08000 * 119.70777 * 180.02562 * 14 13 12 44 44 H 1.07994 * 120.23853 * 179.97438 * 15 14 13 45 45 H 0.97002 * 120.00744 * 354.87913 * 23 22 20 46 46 H 1.08997 * 108.71815 * 79.13124 * 28 7 6 47 47 H 1.09000 * 108.70916 * 197.15010 * 28 7 6 48 48 H 1.08995 * 108.78839 * 332.46190 * 29 2 1 49 49 H 1.09000 * 108.78972 * 90.78696 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0476 -0.7334 -1.2578 5 6 3.4491 -0.4268 -1.5216 6 6 4.3789 -0.8688 -0.3764 7 7 4.3378 0.1389 0.6557 8 6 5.6789 0.3896 1.2004 9 6 6.5476 1.0044 0.1333 10 7 6.0278 1.2193 -1.0368 11 6 6.7506 1.7641 -2.0469 12 6 6.1932 1.9893 -3.3072 13 6 6.9638 2.5443 -4.3046 14 6 8.2903 2.8843 -4.0732 15 6 8.8631 2.6715 -2.8381 16 6 8.1008 2.1109 -1.8150 17 6 8.6584 1.8607 -0.4785 18 8 9.8141 2.1364 -0.2139 19 7 7.8371 1.3121 0.4470 20 6 8.3088 1.0582 1.7090 21 1 7.6814 1.2459 2.5678 22 6 9.5952 0.5591 1.8833 23 7 10.2624 0.8332 2.9798 24 14 10.3733 -0.5012 0.5567 25 1 10.0524 -1.9284 0.8123 26 1 9.8395 -0.1039 -0.7709 27 1 11.8463 -0.3142 0.5741 28 6 3.3733 -0.1584 1.7374 29 6 2.0343 -0.7172 1.2237 30 1 -0.3633 -1.0277 0.0043 31 1 -0.3634 0.5176 0.8878 32 1 -0.3634 0.5099 -0.8922 33 1 1.4495 -0.4306 -2.1173 34 1 1.9400 -1.8082 -1.1123 35 1 3.5535 0.6488 -1.6645 36 1 3.7539 -0.9328 -2.4376 37 1 5.3980 -0.9714 -0.7493 38 1 4.0371 -1.8220 0.0272 39 1 6.1190 -0.5516 1.5297 40 1 5.6054 1.0721 2.0470 41 1 5.1629 1.7286 -3.4991 42 1 6.5308 2.7181 -5.2786 43 1 8.8779 3.3189 -4.8682 44 1 9.8952 2.9375 -2.6643 45 1 9.8893 1.4433 3.6351 46 1 3.8199 -0.8872 2.4137 47 1 3.1789 0.7583 2.2942 48 1 1.2898 -0.6279 2.0147 49 1 2.1653 -1.7723 0.9832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071842065.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:19 Heat of formation + Delta-G solvation = 24.626899 kcal Electronic energy + Delta-G solvation = -31279.001723 eV Core-core repulsion = 27398.990376 eV Total energy + Delta-G solvation = -3880.011347 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.85097 -39.12907 -37.82295 -36.77814 -34.94342 -33.94312 -32.47642 -32.17067 -30.60437 -30.15153 -28.34547 -26.71796 -25.57564 -24.93815 -23.29659 -22.72362 -21.77146 -21.12837 -20.02503 -19.31658 -19.10170 -17.93594 -17.37787 -16.09104 -15.75924 -15.43557 -15.27828 -14.85543 -14.55150 -14.25900 -14.07601 -13.99151 -13.78618 -13.46698 -13.34351 -13.16384 -13.02478 -12.89225 -12.76915 -12.46576 -12.31224 -12.09015 -11.84257 -11.39303 -11.27063 -11.16327 -11.00269 -10.78329 -10.67094 -10.51145 -10.37252 -10.28655 -10.21063 -10.06812 -10.03022 -9.49805 -9.06658 -8.98564 -8.55514 -8.48531 -7.80808 -7.39281 -7.12243 -4.61192 1.32462 1.46051 2.97321 3.16576 3.32871 3.41215 3.64592 3.70559 4.17016 4.29476 4.60029 4.71955 4.76882 4.91390 4.93364 4.97571 5.21295 5.26417 5.32989 5.39356 5.42659 5.46183 5.50757 5.64914 5.67831 5.72430 5.76887 5.79004 5.81754 5.95000 5.97447 5.99880 6.03617 6.05109 6.11270 6.20411 6.32041 6.38984 6.41130 6.50470 6.55769 6.62186 6.66647 6.88827 6.90246 6.97729 7.27084 7.29766 7.41261 7.59416 7.66215 7.85652 8.24090 8.57726 9.00477 9.15387 10.10934 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010877 B = 0.004823 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.572352 B = 5803.577367 C = 7762.992371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 H 0.083 0.917 4 C -0.106 4.106 5 C -0.106 4.106 6 C 0.082 3.918 7 N -0.527 5.527 8 C 0.128 3.872 9 C 0.354 3.646 10 N -0.529 5.529 11 C 0.167 3.833 12 C -0.126 4.126 13 C -0.088 4.088 14 C -0.173 4.173 15 C -0.039 4.039 16 C -0.214 4.214 17 C 0.508 3.492 18 O -0.526 6.526 19 N -0.361 5.361 20 C -0.462 4.462 21 H 0.106 0.894 22 C 0.076 3.924 23 N -0.812 5.812 24 Si 1.068 2.932 25 H -0.293 1.293 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.064 3.936 29 C -0.110 4.110 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.026 0.974 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.125 0.875 45 H 0.285 0.715 46 H 0.029 0.971 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.900 -2.936 -6.905 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 H 0.101 0.899 4 C -0.143 4.143 5 C -0.144 4.144 6 C -0.046 4.046 7 N -0.252 5.252 8 C -0.001 4.001 9 C 0.092 3.908 10 N -0.255 5.255 11 C 0.051 3.949 12 C -0.146 4.146 13 C -0.108 4.108 14 C -0.192 4.192 15 C -0.058 4.058 16 C -0.222 4.222 17 C 0.305 3.695 18 O -0.404 6.404 19 N -0.065 5.065 20 C -0.588 4.588 21 H 0.123 0.877 22 C -0.143 4.143 23 N -0.437 5.437 24 Si 0.895 3.105 25 H -0.222 1.222 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.064 4.064 29 C -0.148 4.148 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.145 0.855 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.143 0.857 45 H 0.096 0.904 46 H 0.048 0.952 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.703 -3.363 -7.429 15.946 hybrid contribution -0.164 0.595 1.040 1.209 sum -13.867 -2.768 -6.389 15.517 Atomic orbital electron populations 1.21903 0.96035 1.01106 1.01253 1.20879 0.94048 1.01076 0.94390 0.89870 1.20640 0.97334 0.99159 0.97189 1.20339 0.93329 1.03835 0.96914 1.21613 1.00173 0.90894 0.91946 1.60380 1.05930 1.46761 1.12164 1.20704 0.86466 0.99856 0.93055 1.22839 0.84382 0.91233 0.92380 1.68569 1.34114 1.24459 0.98379 1.18874 0.88914 0.93697 0.93461 1.20617 1.00010 1.02753 0.91206 1.21022 0.93971 0.97392 0.98371 1.20864 0.95750 1.05602 0.96987 1.20910 0.99178 0.94099 0.91634 1.20748 0.96142 1.10128 0.95182 1.18385 0.86897 0.79139 0.85068 1.90602 1.16513 1.53185 1.80114 1.42590 1.09172 1.42136 1.12600 1.20714 1.03213 1.52892 0.81979 0.87693 1.26462 0.92197 0.95365 1.00300 1.70742 1.35494 1.28070 1.09441 0.83545 0.77796 0.73750 0.75401 1.22173 1.20967 1.19889 1.22349 0.92024 0.99612 0.92391 1.21416 0.95743 0.99688 0.97957 0.93262 0.93075 0.92975 0.92896 0.93427 0.89697 0.93317 0.91226 0.95549 0.91603 0.88844 0.85518 0.86342 0.86431 0.85730 0.90427 0.95228 0.91320 0.91802 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.91 37.16 0.33 -0.96 16 2 C -0.09 -0.91 2.42 -91.05 -0.22 -1.13 16 3 H 0.08 1.04 7.80 -51.93 -0.40 0.64 16 4 C -0.11 -1.16 4.73 -29.30 -0.14 -1.30 16 5 C -0.11 -1.38 5.11 -29.59 -0.15 -1.54 16 6 C 0.08 1.19 4.39 -4.70 -0.02 1.17 16 7 N -0.53 -7.83 3.67 -236.07 -0.87 -8.70 16 8 C 0.13 2.24 3.94 -4.97 -0.02 2.22 16 9 C 0.35 7.40 6.85 -154.87 -1.06 6.34 16 10 N -0.53 -10.49 7.07 -8.10 -0.06 -10.54 16 11 C 0.17 3.37 6.63 -84.50 -0.56 2.81 16 12 C -0.13 -2.09 10.03 -39.25 -0.39 -2.49 16 13 C -0.09 -1.29 10.00 -39.54 -0.40 -1.68 16 14 C -0.17 -2.72 10.02 -39.51 -0.40 -3.12 16 15 C -0.04 -0.75 9.68 -39.32 -0.38 -1.13 16 16 C -0.21 -4.78 5.89 -104.77 -0.62 -5.40 16 17 C 0.51 12.96 5.31 -12.47 -0.07 12.90 16 18 O -0.53 -14.73 13.02 5.17 0.07 -14.66 16 19 N -0.36 -8.78 2.33 -59.56 -0.14 -8.92 16 20 C -0.46 -11.79 8.51 -14.88 -0.13 -11.91 16 21 H 0.11 2.61 7.18 -52.49 -0.38 2.24 16 22 C 0.08 2.05 4.57 -17.49 -0.08 1.97 16 23 N -0.81 -22.38 13.68 55.50 0.76 -21.62 16 24 Si 1.07 26.52 26.33 -169.99 -4.48 22.04 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -7.24 5.55 56.52 0.31 -6.92 16 27 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 28 C 0.06 0.78 5.38 -2.77 -0.01 0.76 16 29 C -0.11 -1.15 4.83 -27.48 -0.13 -1.29 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.43 8.10 -51.93 -0.42 0.01 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.54 8.02 -51.93 -0.42 0.13 16 34 H 0.05 0.51 7.59 -51.93 -0.39 0.11 16 35 H 0.08 1.27 7.63 -51.93 -0.40 0.87 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.18 6.25 -51.93 -0.32 0.85 16 38 H 0.03 0.36 6.79 -51.92 -0.35 0.00 16 39 H 0.07 1.16 8.02 -51.93 -0.42 0.75 16 40 H 0.09 1.60 7.47 -51.93 -0.39 1.21 16 41 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 42 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 44 H 0.12 2.39 7.83 -52.49 -0.41 1.98 16 45 H 0.28 7.56 8.73 -40.82 -0.36 7.21 16 46 H 0.03 0.36 8.02 -51.93 -0.42 -0.06 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.06 0.59 7.70 -51.93 -0.40 0.19 16 49 H 0.06 0.59 6.65 -51.93 -0.35 0.25 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -28.71 373.56 -11.19 -39.89 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.66 Total: 0.65 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -4.44 Total: -3.78 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.30 Total: -49.78 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.07 Total: -14.66 kcal Atomic # 14 Polarization: 26.52 SS G_CDS: -4.48 Total: 22.04 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.71 -11.19 -39.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071842065.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.521 kcal (2) G-P(sol) polarization free energy of solvation -28.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds