Wall clock time and date at job start Tue Mar 31 2020 05:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.57436 * 2 1 4 4 C 1.50465 * 109.57334 * 120.37152 * 2 1 3 5 5 C 1.54293 * 113.03617 * 211.96300 * 4 2 1 6 6 C 1.54068 * 112.29027 * 318.30608 * 5 4 2 7 7 N 1.44270 * 111.98139 * 318.91305 * 6 5 4 8 8 C 1.46900 * 111.00282 * 219.30852 * 7 6 5 9 9 C 1.50706 * 109.46930 * 302.92833 * 8 7 6 10 10 N 1.29827 * 118.34787 * 354.65065 * 9 8 7 11 11 C 1.35630 * 121.62318 * 179.76659 * 10 9 8 12 12 C 1.39638 * 121.62400 * 180.27406 * 11 10 9 13 13 C 1.37714 * 119.69299 * 180.19572 * 12 11 10 14 14 C 1.38871 * 120.82859 * 0.02562 * 13 12 11 15 15 C 1.37789 * 120.57127 * 359.97438 * 14 13 12 16 16 C 1.39373 * 119.52080 * 359.97438 * 15 14 13 17 17 C 1.46961 * 121.91131 * 180.02562 * 16 15 14 18 18 O 1.21717 * 121.28642 * 0.02562 * 17 16 15 19 19 N 1.35337 * 117.42789 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.71740 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99861 * 137.19601 * 20 19 17 22 22 C 1.39064 * 120.00038 * 317.19189 * 20 19 17 23 23 N 1.31264 * 120.00138 * 341.11384 * 22 20 19 24 24 Si 1.86808 * 120.00106 * 161.10950 * 22 20 19 25 25 H 1.48498 * 109.46899 * 90.00223 * 24 22 20 26 26 H 1.48494 * 109.47358 * 210.00148 * 24 22 20 27 27 H 1.48504 * 109.46760 * 330.00367 * 24 22 20 28 28 C 1.47803 * 109.46298 * 96.43389 * 7 6 5 29 29 C 1.45862 * 112.92250 * 276.74244 * 28 7 6 30 30 H 1.08995 * 109.47291 * 180.25173 * 1 2 3 31 31 H 1.09000 * 109.47337 * 300.26003 * 1 2 3 32 32 H 1.09006 * 109.46845 * 60.25342 * 1 2 3 33 33 H 1.08992 * 108.76981 * 332.88820 * 4 2 1 34 34 H 1.09010 * 108.76501 * 91.04810 * 4 2 1 35 35 H 1.08999 * 108.91321 * 79.03061 * 5 4 2 36 36 H 1.08996 * 108.91833 * 197.67278 * 5 4 2 37 37 H 1.08994 * 108.97500 * 198.26897 * 6 5 4 38 38 H 1.08994 * 108.97818 * 79.55648 * 6 5 4 39 39 H 1.09005 * 109.46661 * 62.91725 * 8 7 6 40 40 H 1.08995 * 109.47728 * 182.92504 * 8 7 6 41 41 H 1.07996 * 120.15282 * 0.22521 * 12 11 10 42 42 H 1.08004 * 119.58375 * 180.02562 * 13 12 11 43 43 H 1.08002 * 119.71639 * 179.97438 * 14 13 12 44 44 H 1.08003 * 120.24292 * 180.02562 * 15 14 13 45 45 H 0.96997 * 119.99496 * 179.97438 * 23 22 20 46 46 H 1.09000 * 108.79046 * 37.63072 * 28 7 6 47 47 H 1.09003 * 108.79392 * 155.85162 * 28 7 6 48 48 H 1.08997 * 109.05456 * 181.87189 * 29 28 7 49 49 H 1.09004 * 109.04991 * 300.85007 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0340 -0.7168 1.2231 5 6 3.3713 -0.1519 1.7458 6 6 4.3555 0.1698 0.6050 7 7 4.3448 -0.8456 -0.4198 8 6 5.7024 -1.1060 -0.9171 9 6 6.3032 0.1764 -1.4324 10 7 5.5549 1.2367 -1.4690 11 6 6.0287 2.4264 -1.9159 12 6 5.2255 3.5682 -1.9500 13 6 5.7464 4.7550 -2.4153 14 6 7.0623 4.8319 -2.8524 15 6 7.8748 3.7193 -2.8286 16 6 7.3676 2.5084 -2.3604 17 6 8.1875 1.2898 -2.3115 18 8 9.3475 1.2932 -2.6800 19 7 7.6032 0.1639 -1.8398 20 6 8.3251 -0.9998 -1.7731 21 1 8.2489 -1.6334 -0.9017 22 6 9.1554 -1.3644 -2.8274 23 7 8.9853 -0.8271 -4.0129 24 14 10.5130 -2.6187 -2.5565 25 1 9.9883 -3.9817 -2.8249 26 1 11.6422 -2.3327 -3.4776 27 1 10.9877 -2.5387 -1.1516 28 6 3.4495 -0.4268 -1.5187 29 6 2.0476 -0.7335 -1.2574 30 1 -0.3633 -1.0276 0.0045 31 1 -0.3634 0.5179 0.8876 32 1 -0.3633 0.5099 -0.8923 33 1 1.2860 -0.6337 2.0115 34 1 2.1693 -1.7710 0.9810 35 1 3.1735 0.7598 2.3095 36 1 3.8293 -0.8851 2.4097 37 1 5.3618 0.2477 1.0165 38 1 4.0814 1.1260 0.1594 39 1 6.3179 -1.4954 -0.1061 40 1 5.6597 -1.8373 -1.7242 41 1 4.2006 3.5208 -1.6127 42 1 5.1237 5.6371 -2.4406 43 1 7.4522 5.7718 -3.2142 44 1 8.8975 3.7851 -3.1694 45 1 9.5648 -1.0811 -4.7481 46 1 3.5524 0.6484 -1.6651 47 1 3.7554 -0.9343 -2.4336 48 1 1.4507 -0.4301 -2.1175 49 1 1.9398 -1.8082 -1.1110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071842066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:24 Heat of formation + Delta-G solvation = 25.973130 kcal Electronic energy + Delta-G solvation = -31380.158963 eV Core-core repulsion = 27500.205993 eV Total energy + Delta-G solvation = -3879.952970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.69957 -39.04105 -37.64733 -36.52277 -34.68726 -33.77660 -32.17457 -31.95570 -30.44090 -29.91932 -28.37793 -26.58857 -25.84239 -24.62936 -23.06205 -22.97255 -22.08784 -20.87299 -19.93116 -19.08645 -18.80679 -17.88328 -16.91551 -15.77048 -15.44662 -15.27836 -15.01269 -14.67918 -14.50411 -14.37018 -14.06545 -13.96181 -13.74834 -13.41670 -13.11278 -12.97342 -12.84239 -12.61110 -12.37504 -12.32223 -11.89207 -11.85437 -11.52926 -11.35633 -11.32348 -11.13667 -11.05463 -11.05061 -10.64021 -10.55559 -10.52980 -10.32497 -10.25060 -10.06721 -9.76547 -9.55849 -9.17840 -8.92338 -8.43005 -8.40335 -7.75156 -7.09148 -6.72534 -4.57457 1.45717 1.60943 3.01693 3.11052 3.14815 3.15631 3.73084 3.89275 4.23694 4.37053 4.66488 4.87469 4.90869 5.08225 5.09800 5.15834 5.31474 5.41052 5.46902 5.50265 5.54569 5.58381 5.73180 5.75779 5.80271 5.85483 5.91450 5.92696 5.97757 6.04876 6.07856 6.19499 6.22342 6.28208 6.36589 6.43308 6.46687 6.54980 6.56535 6.59479 6.66844 6.72706 6.75898 6.83537 6.97837 7.05816 7.10686 7.41536 7.53167 7.60086 7.65504 8.05900 8.42276 8.66904 9.08961 9.45997 10.29788 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010022 B = 0.004815 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.270834 B = 5813.307193 C = 7928.649414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.101 4.101 5 C -0.110 4.110 6 C 0.060 3.940 7 N -0.506 5.506 8 C 0.121 3.879 9 C 0.332 3.668 10 N -0.571 5.571 11 C 0.171 3.829 12 C -0.135 4.135 13 C -0.088 4.088 14 C -0.177 4.177 15 C -0.037 4.037 16 C -0.210 4.210 17 C 0.520 3.480 18 O -0.502 6.502 19 N -0.348 5.348 20 C -0.384 4.384 21 H 0.109 0.891 22 C 0.080 3.920 23 N -0.802 5.802 24 Si 0.929 3.071 25 H -0.272 1.272 26 H -0.278 1.278 27 H -0.263 1.263 28 C 0.047 3.953 29 C -0.104 4.104 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.122 0.878 45 H 0.280 0.720 46 H 0.074 0.926 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.825 1.960 6.014 13.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.138 4.138 5 C -0.149 4.149 6 C -0.069 4.069 7 N -0.227 5.227 8 C -0.009 4.009 9 C 0.069 3.931 10 N -0.300 5.300 11 C 0.056 3.944 12 C -0.155 4.155 13 C -0.108 4.108 14 C -0.196 4.196 15 C -0.057 4.057 16 C -0.218 4.218 17 C 0.314 3.686 18 O -0.376 6.376 19 N -0.051 5.051 20 C -0.511 4.511 21 H 0.126 0.874 22 C -0.137 4.137 23 N -0.430 5.430 24 Si 0.753 3.247 25 H -0.197 1.197 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.080 4.080 29 C -0.142 4.142 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.140 0.860 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.140 0.860 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.899 1.564 5.962 13.400 hybrid contribution 1.940 0.375 -0.778 2.123 sum -9.959 1.940 5.184 11.393 Atomic orbital electron populations 1.21878 0.95982 1.01258 1.01029 1.20900 0.94353 1.00021 0.95425 0.91322 1.21222 0.95715 1.00614 0.96271 1.21989 0.95507 0.99796 0.97582 1.21877 0.97939 0.94796 0.92277 1.61976 1.07014 1.43172 1.10575 1.21333 0.88141 0.90998 1.00428 1.24241 0.81060 0.96131 0.91713 1.68498 1.33004 0.98060 1.30466 1.18762 0.90258 0.92189 0.93237 1.20555 0.99423 0.91164 1.04338 1.20968 0.95219 0.97044 0.97525 1.20827 0.94635 0.98124 1.06064 1.20890 0.99357 0.91122 0.94292 1.20823 0.95706 0.95796 1.09476 1.18289 0.87109 0.82446 0.80759 1.90662 1.16883 1.83972 1.46100 1.42302 1.08001 1.10121 1.44635 1.19580 1.26919 0.99613 1.04984 0.87380 1.25424 0.97641 0.97133 0.93484 1.69799 1.34519 1.38236 1.00458 0.85929 0.80138 0.79241 0.79377 1.19717 1.20265 1.18728 1.21088 0.92009 1.02028 0.92914 1.20656 0.96133 1.00437 0.96977 0.93037 0.93223 0.93100 0.93624 0.91772 0.92999 0.92779 0.93181 0.91404 0.88508 0.87827 0.85980 0.86552 0.86642 0.85956 0.90940 0.90780 0.92668 0.92438 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.90 37.15 0.33 -1.06 16 2 C -0.09 -1.01 2.39 -91.10 -0.22 -1.23 16 3 H 0.07 0.86 7.17 -51.93 -0.37 0.49 16 4 C -0.10 -1.16 4.98 -27.32 -0.14 -1.29 16 5 C -0.11 -1.38 6.15 -25.50 -0.16 -1.53 16 6 C 0.06 0.90 3.83 -4.67 -0.02 0.88 16 7 N -0.51 -7.75 4.45 -241.00 -1.07 -8.83 16 8 C 0.12 2.13 4.28 -4.97 -0.02 2.11 16 9 C 0.33 7.01 6.73 -154.87 -1.04 5.97 16 10 N -0.57 -11.43 4.85 -8.09 -0.04 -11.47 16 11 C 0.17 3.57 6.63 -84.49 -0.56 3.01 16 12 C -0.13 -2.34 10.03 -39.25 -0.39 -2.74 16 13 C -0.09 -1.37 10.00 -39.54 -0.40 -1.77 16 14 C -0.18 -2.96 10.02 -39.51 -0.40 -3.36 16 15 C -0.04 -0.76 9.68 -39.32 -0.38 -1.14 16 16 C -0.21 -4.86 5.89 -104.77 -0.62 -5.48 16 17 C 0.52 13.76 6.92 -12.47 -0.09 13.67 16 18 O -0.50 -14.66 14.42 5.17 0.07 -14.59 16 19 N -0.35 -8.60 2.67 -59.56 -0.16 -8.76 16 20 C -0.38 -9.51 8.23 -14.89 -0.12 -9.63 16 21 H 0.11 2.43 6.98 -52.49 -0.37 2.06 16 22 C 0.08 2.04 4.39 -17.49 -0.08 1.96 16 23 N -0.80 -22.00 11.66 55.50 0.65 -21.35 16 24 Si 0.93 19.54 29.59 -169.99 -5.03 14.51 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 28 C 0.05 0.71 4.13 -6.70 -0.03 0.68 16 29 C -0.10 -1.30 4.92 -29.32 -0.14 -1.44 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.45 8.10 -51.93 -0.42 0.03 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.48 7.69 -51.93 -0.40 0.08 16 34 H 0.06 0.79 7.38 -51.92 -0.38 0.41 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.82 7.32 -51.93 -0.38 0.44 16 38 H 0.07 1.10 5.38 -51.93 -0.28 0.82 16 39 H 0.10 1.63 7.31 -51.93 -0.38 1.25 16 40 H 0.10 1.85 7.92 -51.93 -0.41 1.44 16 41 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 42 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 43 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 44 H 0.12 2.50 7.83 -52.48 -0.41 2.08 16 45 H 0.28 7.25 8.30 -40.82 -0.34 6.91 16 46 H 0.07 1.24 5.49 -51.93 -0.28 0.95 16 47 H 0.05 0.89 7.66 -51.93 -0.40 0.50 16 48 H 0.06 0.67 8.02 -51.93 -0.42 0.26 16 49 H 0.06 0.75 7.58 -51.93 -0.39 0.36 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -28.90 373.92 -11.80 -40.69 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.39 Total: 6.55 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -4.46 Total: -2.39 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.62 Total: -50.40 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.07 Total: -14.59 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.90 -11.80 -40.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071842066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.666 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds