Wall clock time and date at job start Tue Mar 31 2020 05:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00517 * 2 1 4 4 C 1.50697 * 109.47159 * 270.00037 * 3 2 1 5 5 H 1.07993 * 119.99988 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99731 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00640 * 359.97438 * 6 4 3 8 8 Si 1.86808 * 119.99982 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46990 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47266 * 119.99699 * 8 6 4 11 11 H 1.48491 * 109.47089 * 240.00251 * 8 6 4 12 12 C 1.34780 * 119.99538 * 179.97438 * 2 1 3 13 13 O 1.21282 * 120.00046 * 180.02562 * 12 2 1 14 14 C 1.50698 * 119.99987 * 0.02562 * 12 2 1 15 15 O 1.42905 * 109.47268 * 180.02562 * 14 12 2 16 16 C 1.35969 * 117.00320 * 180.02562 * 15 14 12 17 17 C 1.38704 * 119.99905 * 179.97438 * 16 15 14 18 18 C 1.38121 * 120.00125 * 180.02562 * 17 16 15 19 19 C 1.38714 * 120.00216 * 359.97438 * 18 17 16 20 20 O 1.35966 * 120.00802 * 180.02562 * 19 18 17 21 21 C 1.35661 * 118.00063 * 76.89643 * 20 19 18 22 22 C 1.38941 * 119.68909 * 175.15143 * 21 20 19 23 23 C 1.38371 * 119.11369 * 179.79255 * 22 21 20 24 24 C 1.38836 * 118.48597 * 0.47528 * 23 22 21 25 25 C 1.38054 * 119.28966 * 359.50426 * 24 23 22 26 26 N 1.31956 * 120.83734 * 0.27324 * 25 24 23 27 27 C 1.38730 * 119.99338 * 0.27214 * 19 18 17 28 28 C 1.38116 * 119.99288 * 359.47287 * 27 19 18 29 29 H 1.09000 * 109.47142 * 270.00331 * 1 2 3 30 30 H 1.09004 * 109.46801 * 29.99755 * 1 2 3 31 31 H 1.08996 * 109.47548 * 149.99456 * 1 2 3 32 32 H 1.09000 * 109.47071 * 30.00141 * 3 2 1 33 33 H 1.09004 * 109.47048 * 149.99656 * 3 2 1 34 34 H 0.96996 * 120.00720 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.47363 * 60.00071 * 14 12 2 36 36 H 1.09001 * 109.46982 * 299.99482 * 14 12 2 37 37 H 1.08004 * 119.99916 * 0.02562 * 17 16 15 38 38 H 1.08007 * 119.99825 * 179.97438 * 18 17 16 39 39 H 1.08008 * 120.44146 * 0.02562 * 22 21 20 40 40 H 1.08001 * 120.76067 * 180.23274 * 23 22 21 41 41 H 1.07996 * 120.35307 * 179.77859 * 24 23 22 42 42 H 1.08001 * 119.58105 * 180.25357 * 25 24 23 43 43 H 1.07996 * 119.99961 * 179.70439 * 27 19 18 44 44 H 1.08007 * 119.99576 * 180.27917 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0975 1.0961 -2.2416 6 6 3.1262 2.8778 -1.6727 7 7 3.5527 3.6184 -0.6731 8 14 3.4370 3.4175 -3.4339 9 1 2.8601 2.4169 -4.3673 10 1 2.7991 4.7380 -3.6669 11 1 4.8994 3.5260 -3.6675 12 6 2.1388 -1.1673 0.0005 13 8 3.3516 -1.1674 0.0010 14 6 1.3852 -2.4723 0.0005 15 8 2.3137 -3.5586 0.0017 16 6 1.7940 -4.8150 0.0013 17 6 2.6389 -5.9150 0.0019 18 6 2.1109 -7.1914 0.0010 19 6 0.7357 -7.3731 0.0000 20 8 0.2159 -8.6295 -0.0004 21 6 0.2225 -9.3219 1.1663 22 6 -0.3899 -10.5674 1.2308 23 6 -0.3723 -11.2651 2.4256 24 6 0.2517 -10.6853 3.5219 25 6 0.8404 -9.4440 3.3856 26 7 0.8114 -8.8046 2.2317 27 6 -0.1092 -6.2729 -0.0057 28 6 0.4189 -4.9967 0.0005 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 1.6086 2.0283 0.5139 33 1 3.1500 1.1382 0.5139 34 1 4.0296 4.4443 -0.8503 35 1 0.7589 -2.5302 -0.8897 36 1 0.7583 -2.5298 0.8903 37 1 3.7096 -5.7735 0.0031 38 1 2.7689 -8.0479 0.0010 39 1 -0.8699 -10.9870 0.3590 40 1 -0.8368 -12.2369 2.5046 41 1 0.2800 -11.2017 4.4700 42 1 1.3307 -8.9904 4.2344 43 1 -1.1799 -6.4143 -0.0113 44 1 -0.2389 -4.1401 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071852188.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:24 Heat of formation + Delta-G solvation = -22.791646 kcal Electronic energy + Delta-G solvation = -27789.252025 eV Core-core repulsion = 23673.632698 eV Total energy + Delta-G solvation = -4115.619326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.32887 -40.25905 -39.20939 -38.42273 -36.53448 -34.87179 -32.87869 -32.68047 -31.43875 -31.12793 -29.70759 -28.57280 -27.15814 -25.70978 -24.34385 -23.83502 -23.31848 -22.56854 -21.79895 -19.23011 -18.70721 -18.37979 -17.58060 -16.80248 -16.66565 -16.41649 -16.07518 -15.94939 -15.49271 -15.40876 -14.99191 -14.78317 -14.47015 -14.28717 -14.17958 -13.63927 -13.62351 -13.37047 -12.90347 -12.76781 -12.62708 -12.41524 -12.26523 -12.16317 -12.03255 -11.89257 -11.25428 -11.01158 -10.95704 -10.85245 -10.63043 -10.35069 -10.18868 -9.98263 -9.65458 -9.22930 -9.01306 -8.97729 -8.46696 -8.21034 -7.75468 -6.07403 -4.12468 0.73189 0.84540 1.01638 1.13491 2.72517 2.88435 3.23951 3.28802 3.36883 3.38456 3.41258 3.65724 3.95038 4.05374 4.42633 4.43395 4.58514 4.59369 4.66412 4.70355 4.79614 4.89200 5.00402 5.09514 5.16217 5.24013 5.27490 5.28834 5.40125 5.52023 5.53218 5.70760 5.76654 5.80534 5.81992 6.08529 6.10982 6.13710 6.20860 6.40895 6.92582 7.12561 7.31638 7.37394 7.46299 7.54288 7.88580 8.18193 8.26497 8.83376 8.97831 9.52783 11.00776 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.029437 B = 0.001762 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.966112 B =15886.097300 C =16028.302493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.598 5.598 3 C 0.246 3.754 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.506 3.494 13 O -0.517 6.517 14 C 0.041 3.959 15 O -0.283 6.283 16 C 0.144 3.856 17 C -0.138 4.138 18 C -0.068 4.068 19 C 0.044 3.956 20 O -0.245 6.245 21 C 0.315 3.685 22 C -0.189 4.189 23 C -0.043 4.043 24 C -0.212 4.212 25 C 0.140 3.860 26 N -0.525 5.525 27 C -0.073 4.073 28 C -0.201 4.201 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.263 0.737 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.140 0.860 38 H 0.130 0.870 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.160 0.840 43 H 0.130 0.870 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.326 -28.740 6.995 32.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.333 5.333 3 C 0.127 3.873 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.290 3.710 13 O -0.392 6.392 14 C -0.038 4.038 15 O -0.195 6.195 16 C 0.097 3.903 17 C -0.157 4.157 18 C -0.087 4.087 19 C 0.002 3.998 20 O -0.150 6.150 21 C 0.138 3.862 22 C -0.209 4.209 23 C -0.069 4.069 24 C -0.232 4.232 25 C -0.016 4.016 26 N -0.248 5.248 27 C -0.092 4.092 28 C -0.220 4.220 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.158 0.842 38 H 0.148 0.852 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.155 0.845 42 H 0.177 0.823 43 H 0.148 0.852 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.076 -27.722 6.703 30.596 hybrid contribution -0.522 -0.278 -0.802 0.997 sum -11.598 -28.001 5.901 30.877 Atomic orbital electron populations 1.21714 0.81243 1.02833 1.00704 1.48093 1.06262 1.07265 1.71635 1.19358 0.92657 0.77500 0.97742 1.21461 1.36716 1.06355 0.92228 0.92316 1.24941 0.95266 0.96349 0.97547 1.69935 1.38292 1.14320 1.30714 0.86421 0.78152 0.78280 0.84450 1.19784 1.20938 1.20814 1.19691 0.88172 0.84227 0.78874 1.90725 1.13427 1.86658 1.48403 1.22727 0.92164 0.85908 1.03015 1.86237 1.34483 1.11213 1.87538 1.19174 0.91835 0.85040 0.94211 1.20304 1.00429 0.89312 1.05619 1.21002 0.93856 0.96914 0.96907 1.18285 0.91513 0.82108 1.07892 1.84680 1.76433 1.26154 1.27767 1.20142 0.91360 0.89447 0.85238 1.21084 1.05143 0.94266 1.00437 1.21424 0.94916 0.99136 0.91415 1.22043 1.02875 0.97906 1.00366 1.22513 0.94117 0.91305 0.93679 1.67421 1.20242 1.36990 1.00108 1.20872 0.99827 0.90822 0.97680 1.21120 0.94007 0.97878 1.08976 0.93356 0.90241 0.92653 0.94602 0.93627 0.92694 0.89343 0.89513 0.84234 0.85169 0.83997 0.84082 0.84470 0.82288 0.85199 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.24 59.85 0.61 1.78 16 2 N -0.60 -12.46 2.86 -182.96 -0.52 -12.98 16 3 C 0.25 6.39 5.16 -5.20 -0.03 6.36 16 4 C -0.53 -14.95 9.39 -34.44 -0.32 -15.28 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.85 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.51 10.67 7.75 -10.99 -0.09 10.59 16 13 O -0.52 -13.57 16.08 -14.35 -0.23 -13.80 16 14 C 0.04 0.62 3.77 36.00 0.14 0.75 16 15 O -0.28 -4.79 9.67 -39.55 -0.38 -5.17 16 16 C 0.14 2.02 6.69 -39.24 -0.26 1.75 16 17 C -0.14 -1.79 9.98 -39.45 -0.39 -2.18 16 18 C -0.07 -0.81 9.56 -39.45 -0.38 -1.19 16 19 C 0.04 0.53 5.16 -39.22 -0.20 0.33 16 20 O -0.24 -2.83 9.96 -3.09 -0.03 -2.86 16 21 C 0.32 3.31 7.41 -17.10 -0.13 3.18 16 22 C -0.19 -1.45 10.04 -39.27 -0.39 -1.84 16 23 C -0.04 -0.25 10.17 -39.31 -0.40 -0.65 16 24 C -0.21 -1.24 10.11 -39.43 -0.40 -1.63 16 25 C 0.14 1.10 11.18 -17.57 -0.20 0.91 16 26 N -0.53 -5.70 9.06 -13.32 -0.12 -5.82 16 27 C -0.07 -0.82 9.98 -39.44 -0.39 -1.22 16 28 C -0.20 -2.35 9.03 -39.45 -0.36 -2.70 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 31 H 0.05 0.63 6.44 -51.93 -0.33 0.30 16 32 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.09 1.12 6.92 -51.93 -0.36 0.76 16 36 H 0.09 1.05 7.62 -51.93 -0.40 0.65 16 37 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 38 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 39 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 41 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 42 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.14 1.29 6.29 -52.48 -0.33 0.96 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -36.25 384.35 -8.64 -44.88 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.57 Total: -1.74 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -3.28 Total: 0.60 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.09 Total: -44.55 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.64 Total: -21.84 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.25 -8.64 -44.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071852188.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.091 kcal (2) G-P(sol) polarization free energy of solvation -36.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds