Wall clock time and date at job start Tue Mar 31 2020 07:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86793 * 120.00161 * 2 1 4 4 H 1.48507 * 109.46972 * 274.65296 * 3 2 1 5 5 H 1.48504 * 109.47354 * 34.64857 * 3 2 1 6 6 H 1.48497 * 109.47808 * 154.65045 * 3 2 1 7 7 C 1.39892 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99891 * 162.16632 * 7 2 1 9 9 C 1.41212 * 120.00201 * 342.16153 * 7 2 1 10 10 C 1.40829 * 120.17770 * 155.14336 * 9 7 2 11 11 C 1.36442 * 119.81003 * 180.02562 * 10 9 7 12 12 C 1.39315 * 120.18433 * 0.02562 * 11 10 9 13 13 O 1.35684 * 119.81274 * 179.97438 * 12 11 10 14 14 C 1.42904 * 116.99215 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46606 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.47082 * 305.00125 * 15 14 13 17 17 O 1.42896 * 109.47412 * 64.99786 * 15 14 13 18 18 C 1.52997 * 109.47046 * 185.00286 * 15 14 13 19 19 N 1.46900 * 109.47398 * 179.97438 * 18 15 14 20 20 C 1.47474 * 110.99883 * 265.97055 * 19 18 15 21 21 C 1.53516 * 87.93362 * 221.29266 * 20 19 18 22 22 N 1.46497 * 114.34736 * 139.68081 * 21 20 19 23 23 C 1.34949 * 126.03600 * 350.79672 * 22 21 20 24 24 C 1.35318 * 107.74613 * 179.83904 * 23 22 21 25 25 C 1.39862 * 107.91661 * 0.41851 * 24 23 22 26 26 N 1.30831 * 108.20633 * 359.74137 * 25 24 23 27 27 C 1.47478 * 111.00650 * 169.99622 * 19 18 15 28 28 C 1.39308 * 120.36536 * 0.25451 * 12 11 10 29 29 C 1.36439 * 120.18327 * 359.48435 * 28 12 11 30 30 H 0.97002 * 119.99859 * 0.02562 * 1 2 3 31 31 H 1.07995 * 120.09962 * 0.02562 * 10 9 7 32 32 H 1.08005 * 119.90657 * 179.97438 * 11 10 9 33 33 H 1.08995 * 109.47272 * 60.00092 * 14 13 12 34 34 H 1.08996 * 109.46907 * 299.99732 * 14 13 12 35 35 H 0.96702 * 113.99839 * 59.99656 * 17 15 14 36 36 H 1.09002 * 109.46805 * 299.99380 * 18 15 14 37 37 H 1.08999 * 109.47703 * 59.99397 * 18 15 14 38 38 H 1.09001 * 113.48180 * 336.05804 * 20 19 18 39 39 H 1.09003 * 113.48314 * 106.52963 * 20 19 18 40 40 H 1.08997 * 114.17030 * 272.38090 * 21 20 19 41 41 H 1.08005 * 126.12547 * 359.97438 * 23 22 21 42 42 H 1.08002 * 126.03897 * 180.16592 * 24 23 22 43 43 H 1.08004 * 125.89560 * 179.71401 * 25 24 23 44 44 H 1.08997 * 113.47858 * 253.47837 * 27 19 18 45 45 H 1.09000 * 113.46892 * 23.87413 * 27 19 18 46 46 H 1.07996 * 119.90888 * 179.71793 * 28 12 11 47 47 H 1.08003 * 120.09353 * 180.25234 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3920 2.1031 -1.3955 5 1 1.4929 2.6223 0.7960 6 1 3.5861 1.4138 0.5994 7 6 2.0083 -1.2115 0.0005 8 1 3.0493 -1.2341 -0.2859 9 6 1.3531 -2.4049 0.3757 10 6 1.8226 -3.6474 -0.0923 11 6 1.1835 -4.7958 0.2745 12 6 0.0693 -4.7414 1.1090 13 8 -0.5608 -5.8881 1.4686 14 6 -1.6972 -5.7623 2.3258 15 6 -2.2698 -7.1502 2.6204 16 1 -2.4874 -7.6601 1.6820 17 8 -1.3164 -7.9104 3.3655 18 6 -3.5574 -7.0084 3.4344 19 7 -4.1075 -8.3409 3.7168 20 6 -5.1079 -8.7252 2.7037 21 6 -5.9627 -9.2951 3.8445 22 7 -7.3979 -9.0321 3.7134 23 6 -7.9757 -8.2142 2.8088 24 6 -9.3125 -8.2492 3.0157 25 6 -9.5592 -9.1108 4.0895 26 7 -8.4123 -9.5807 4.5085 27 6 -5.2094 -8.2618 4.6939 28 6 -0.4050 -3.5160 1.5716 29 6 0.2258 -2.3588 1.2185 30 1 -0.4850 0.8401 -0.0004 31 1 2.6859 -3.6913 -0.7396 32 1 1.5419 -5.7495 -0.0839 33 1 -2.4561 -5.1523 1.8359 34 1 -1.3969 -5.2877 3.2599 35 1 -1.0752 -7.5151 4.2145 36 1 -3.3397 -6.4985 4.3729 37 1 -4.2846 -6.4285 2.8661 38 1 -5.5666 -7.8736 2.2013 39 1 -4.7515 -9.4843 2.0074 40 1 -5.7362 -10.3309 4.0974 41 1 -7.4631 -7.6370 2.0534 42 1 -10.0569 -7.7046 2.4539 43 1 -10.5291 -9.3470 4.5019 44 1 -4.9387 -8.6278 5.6842 45 1 -5.6942 -7.2860 4.7233 46 1 -1.2720 -3.4821 2.2145 47 1 -0.1407 -1.4098 1.5813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071877088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:29 Heat of formation + Delta-G solvation = 59.817063 kcal Electronic energy + Delta-G solvation = -28231.282557 eV Core-core repulsion = 24189.652597 eV Total energy + Delta-G solvation = -4041.629960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.88917 -40.30138 -38.96787 -37.31935 -36.01204 -33.37731 -33.14378 -31.12427 -30.39783 -29.69161 -29.29686 -27.96352 -26.66043 -25.13895 -24.33606 -22.42246 -21.84932 -21.29920 -20.91842 -20.40502 -19.87067 -18.16632 -17.39435 -16.97153 -16.74751 -16.38184 -16.26169 -15.55618 -15.21461 -15.13376 -14.79733 -14.47684 -14.18711 -13.98843 -13.95442 -13.61341 -13.33571 -13.22783 -12.92951 -12.85446 -12.46027 -12.29293 -12.06282 -11.83432 -11.68800 -11.46962 -11.44521 -11.15533 -11.07277 -11.00967 -10.89432 -10.62440 -10.08519 -9.93191 -9.83481 -9.80045 -9.46723 -9.40789 -9.05224 -8.95662 -7.70045 -7.05355 -6.77174 -4.29146 1.50118 2.00107 2.50920 2.72814 2.92273 3.05186 3.09340 3.18116 3.24123 3.57867 3.82434 3.91869 4.16789 4.26249 4.33491 4.52682 4.55186 4.57348 4.60817 4.74474 4.86340 5.03647 5.06737 5.11224 5.17473 5.22058 5.26850 5.31570 5.45623 5.55912 5.58941 5.63676 5.66219 5.99697 6.04769 6.24281 6.29077 6.31573 6.62326 6.67292 6.85060 7.02747 7.23739 7.34741 7.36482 7.51731 7.68651 7.85764 7.96248 8.11197 8.40094 8.60765 8.86236 8.94984 10.17758 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.018090 B = 0.001739 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.415675 B =16101.408927 C =17176.489656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.087 3.913 10 C -0.195 4.195 11 C -0.111 4.111 12 C -0.011 4.011 13 O -0.317 6.317 14 C 0.038 3.962 15 C 0.123 3.877 16 H 0.104 0.896 17 O -0.538 6.538 18 C -0.009 4.009 19 N -0.446 5.446 20 C -0.009 4.009 21 C 0.134 3.866 22 N -0.363 5.363 23 C 0.052 3.948 24 C -0.273 4.273 25 C 0.043 3.957 26 N -0.295 5.295 27 C -0.011 4.011 28 C -0.174 4.174 29 C -0.135 4.135 30 H 0.279 0.721 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.370 0.630 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.136 0.864 41 H 0.172 0.828 42 H 0.148 0.852 43 H 0.183 0.817 44 H 0.101 0.899 45 H 0.077 0.923 46 H 0.092 0.908 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.993 -12.617 7.673 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.215 4.215 11 C -0.130 4.130 12 C -0.054 4.054 13 O -0.233 6.233 14 C -0.040 4.040 15 C 0.063 3.937 16 H 0.122 0.878 17 O -0.342 6.342 18 C -0.139 4.139 19 N -0.168 5.168 20 C -0.139 4.139 21 C 0.031 3.969 22 N -0.145 5.145 23 C -0.094 4.094 24 C -0.302 4.302 25 C -0.143 4.143 26 N -0.115 5.115 27 C -0.141 4.141 28 C -0.193 4.193 29 C -0.154 4.154 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.217 0.783 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.154 0.846 41 H 0.189 0.811 42 H 0.166 0.834 43 H 0.200 0.800 44 H 0.119 0.881 45 H 0.095 0.905 46 H 0.110 0.890 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.833 -14.217 8.063 22.072 hybrid contribution -0.994 2.788 -0.317 2.977 sum -15.827 -11.429 7.746 21.003 Atomic orbital electron populations 1.69842 1.07547 1.29037 1.36274 1.25880 0.94714 1.01255 0.92336 0.86332 0.80766 0.80787 0.79027 1.19615 1.20135 1.18449 1.19472 0.98107 0.91215 1.40463 0.90457 1.17601 0.91850 0.92203 0.89859 1.20612 1.03213 0.92232 1.05454 1.19626 0.95548 0.97715 1.00115 1.18595 0.97756 0.83792 1.05303 1.85869 1.42045 1.30658 1.64713 1.23112 0.89306 0.96931 0.94609 1.21705 0.86145 0.90931 0.94925 0.87802 1.86646 1.61763 1.50530 1.35270 1.23373 0.98312 0.90616 1.01559 1.68948 1.18933 1.23951 1.04942 1.24471 0.91789 1.01674 0.95993 1.22962 0.73733 1.01687 0.98515 1.48694 1.06039 1.34530 1.25268 1.22528 0.94375 0.96561 0.95954 1.21544 0.95251 1.08902 1.04524 1.23933 0.97164 0.96883 0.96296 1.77380 0.95535 1.21505 1.17097 1.24391 0.91442 0.98901 0.99369 1.20577 1.01329 0.92959 1.04464 1.20928 0.98527 0.96438 0.99510 0.91024 0.88155 0.88443 0.92513 0.92866 0.78334 0.89673 0.92090 0.90012 0.87602 0.84607 0.81115 0.83422 0.79991 0.88080 0.90493 0.89000 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.47 10.97 55.55 0.61 -19.86 16 2 C 0.07 1.86 5.13 -17.34 -0.09 1.77 16 3 Si 0.91 18.47 29.59 -169.99 -5.03 13.44 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 7 C -0.46 -12.17 9.04 -37.83 -0.34 -12.51 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 9 C 0.09 2.31 5.57 -106.81 -0.60 1.71 16 10 C -0.20 -4.80 9.74 -39.25 -0.38 -5.18 16 11 C -0.11 -2.59 9.92 -39.83 -0.40 -2.98 16 12 C -0.01 -0.26 6.71 -38.78 -0.26 -0.52 16 13 O -0.32 -6.35 10.09 -23.61 -0.24 -6.59 16 14 C 0.04 0.56 4.37 37.16 0.16 0.72 16 15 C 0.12 1.46 3.52 -26.73 -0.09 1.37 16 16 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 17 O -0.54 -7.12 13.17 -40.09 -0.53 -7.65 16 18 C -0.01 -0.08 4.48 -3.83 -0.02 -0.10 16 19 N -0.45 -3.74 6.20 -244.67 -1.52 -5.25 16 20 C -0.01 -0.07 7.06 -7.55 -0.05 -0.12 16 21 C 0.13 1.00 5.39 -67.72 -0.36 0.64 16 22 N -0.36 -3.23 3.83 -54.60 -0.21 -3.44 16 23 C 0.05 0.39 10.71 -17.22 -0.18 0.21 16 24 C -0.27 -2.08 10.80 -40.02 -0.43 -2.51 16 25 C 0.04 0.36 12.02 -17.37 -0.21 0.15 16 26 N -0.29 -3.09 12.57 30.62 0.39 -2.71 16 27 C -0.01 -0.08 7.49 -7.55 -0.06 -0.14 16 28 C -0.17 -4.01 8.96 -39.83 -0.36 -4.36 16 29 C -0.13 -3.44 8.64 -39.25 -0.34 -3.78 16 30 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 31 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 32 H 0.10 2.06 8.06 -52.48 -0.42 1.64 16 33 H 0.06 0.81 7.63 -51.93 -0.40 0.42 16 34 H 0.05 0.75 7.66 -51.93 -0.40 0.35 16 35 H 0.37 3.72 9.05 45.56 0.41 4.13 16 36 H 0.08 0.67 8.08 -51.93 -0.42 0.26 16 37 H 0.06 0.47 7.30 -51.93 -0.38 0.09 16 38 H 0.08 0.48 5.66 -51.93 -0.29 0.19 16 39 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.14 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.17 0.87 6.74 -52.48 -0.35 0.52 16 42 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.18 0.95 8.06 -52.48 -0.42 0.53 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.57 7.91 -51.93 -0.41 0.16 16 46 H 0.09 1.85 6.27 -52.49 -0.33 1.52 16 47 H 0.12 3.15 6.18 -52.48 -0.32 2.83 16 LS Contribution 390.78 15.07 5.89 5.89 Total: -1.00 -31.72 390.78 -10.47 -42.19 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -5.82 Total: 9.60 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -4.01 Total: -25.63 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: -0.73 Total: -31.25 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.77 Total: -14.24 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.72 -10.47 -42.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071877088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.010 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds