Wall clock time and date at job start Tue Mar 31 2020 06:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42898 * 109.47024 * 2 1 4 4 C 1.35953 * 117.00362 * 180.02562 * 3 2 1 5 5 C 1.38669 * 120.05742 * 0.27199 * 4 3 2 6 6 C 1.38186 * 119.96585 * 180.23283 * 5 4 3 7 7 C 1.38259 * 120.09189 * 359.49639 * 6 5 4 8 8 C 1.50705 * 119.93073 * 180.27689 * 7 6 5 9 9 N 1.46508 * 109.47237 * 89.99973 * 8 7 6 10 10 C 1.34773 * 120.00056 * 179.97438 * 9 8 7 11 11 O 1.21544 * 119.99739 * 0.02562 * 10 9 8 12 12 C 1.47877 * 119.99896 * 179.97438 * 10 9 8 13 13 C 1.39919 * 120.02801 * 359.73149 * 12 10 9 14 14 C 1.38330 * 120.36251 * 179.73779 * 13 12 10 15 15 C 1.37751 * 120.40603 * 0.55957 * 14 13 12 16 16 C 1.40752 * 120.04476 * 359.69504 * 15 14 13 17 17 C 1.41437 * 120.17977 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99796 * 24.44159 * 17 16 15 19 19 C 1.39937 * 119.99846 * 204.43964 * 17 16 15 20 20 N 1.30825 * 120.00066 * 17.87864 * 19 17 16 21 21 Si 1.86804 * 119.99818 * 197.87957 * 19 17 16 22 22 H 1.48500 * 109.47187 * 60.00362 * 21 19 17 23 23 H 1.48499 * 109.46934 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47345 * 299.99989 * 21 19 17 25 25 C 1.39002 * 120.02512 * 179.97438 * 12 10 9 26 26 C 1.38253 * 120.12947 * 0.24730 * 7 6 5 27 27 C 1.38328 * 120.03189 * 0.02562 * 26 7 6 28 28 F 1.35097 * 120.05225 * 180.02562 * 27 26 7 29 29 H 1.08996 * 109.47519 * 59.99627 * 1 2 3 30 30 H 1.09002 * 109.47126 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47063 * 299.99364 * 1 2 3 32 32 H 1.09002 * 109.46634 * 240.00339 * 2 1 3 33 33 H 1.08991 * 109.47215 * 120.00020 * 2 1 3 34 34 H 1.07994 * 120.01785 * 0.02562 * 5 4 3 35 35 H 1.07997 * 119.94976 * 179.77114 * 6 5 4 36 36 H 1.09003 * 109.46622 * 209.99587 * 8 7 6 37 37 H 1.08999 * 109.47485 * 329.99648 * 8 7 6 38 38 H 0.96998 * 119.99633 * 359.97438 * 9 8 7 39 39 H 1.08001 * 119.81944 * 359.97438 * 13 12 10 40 40 H 1.07989 * 119.79896 * 180.27619 * 14 13 12 41 41 H 1.08008 * 119.97798 * 179.72373 * 15 14 13 42 42 H 0.96998 * 119.99700 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.20066 * 359.96103 * 25 12 10 44 44 H 1.08001 * 119.98486 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3541 1.5255 -0.0005 5 6 4.2000 0.4267 -0.0068 6 6 5.5697 0.6100 -0.0024 7 6 6.0981 1.8877 -0.0024 8 6 7.5923 2.0834 -0.0040 9 7 8.0750 2.1475 -1.3858 10 6 9.3885 2.3202 -1.6335 11 8 10.1726 2.4224 -0.7104 12 6 9.8758 2.3843 -3.0282 13 6 8.9744 2.2601 -4.0912 14 6 9.4219 2.3244 -5.3985 15 6 10.7611 2.5000 -5.6692 16 6 11.6835 2.6216 -4.6130 17 6 13.0591 2.8025 -4.8876 18 1 13.3699 3.2334 -5.8278 19 6 14.0174 2.4231 -3.9410 20 7 13.6942 1.6001 -2.9767 21 14 15.7579 3.0918 -4.0543 22 1 15.7262 4.5734 -3.9586 23 1 16.5732 2.5409 -2.9421 24 1 16.3582 2.6923 -5.3524 25 6 11.2303 2.5630 -3.2842 26 6 5.2583 2.9860 -0.0016 27 6 3.8865 2.8085 -0.0002 28 9 3.0655 3.8814 0.0001 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.7886 -0.5718 -0.0116 35 1 6.2282 -0.2459 -0.0035 36 1 7.8375 3.0129 0.5099 37 1 8.0688 1.2480 0.5089 38 1 7.4493 2.0656 -2.1224 39 1 7.9230 2.1170 -3.8899 40 1 8.7177 2.2319 -6.2119 41 1 11.1035 2.5448 -6.6925 42 1 14.3586 1.3369 -2.3208 43 1 11.9300 2.6560 -2.4669 44 1 5.6736 3.9829 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071879452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:04 Heat of formation + Delta-G solvation = -83.127407 kcal Electronic energy + Delta-G solvation = -27924.664011 eV Core-core repulsion = 23721.082457 eV Total energy + Delta-G solvation = -4203.581554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.137 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -48.97057 -40.46529 -39.28198 -38.11972 -36.96558 -34.42097 -33.71890 -32.33415 -31.14756 -30.69225 -29.68091 -29.41221 -26.14094 -25.21014 -24.47535 -22.62653 -22.29177 -21.44793 -20.89896 -19.58614 -18.78474 -17.87882 -17.08289 -17.01983 -16.72080 -16.13995 -15.64824 -15.45974 -15.21288 -15.02735 -14.77034 -14.61047 -14.31266 -14.01451 -13.65532 -13.48548 -13.34252 -13.21438 -12.98546 -12.66921 -12.49447 -12.38148 -12.19498 -12.13644 -11.74390 -11.64218 -11.34448 -11.18209 -11.15097 -11.08025 -10.75357 -10.50985 -10.05036 -9.70475 -9.28692 -9.21465 -9.09123 -8.71583 -8.43291 -7.64042 -7.52911 -6.80921 -4.42080 0.82490 0.84473 2.19762 2.66247 2.81648 3.07234 3.08829 3.12647 3.16415 3.83921 3.85935 3.91647 3.94163 4.31532 4.39556 4.45598 4.57793 4.63408 4.72380 4.79685 4.92523 5.02008 5.28717 5.32651 5.39493 5.49136 5.58738 5.60538 5.62434 5.77622 5.82306 5.89535 6.08722 6.24229 6.27078 6.31822 6.71125 6.78944 6.93148 6.97826 7.00894 7.20543 7.37313 7.69183 7.74747 7.91667 8.07096 8.17979 8.49535 8.79315 8.82578 8.91925 10.13782 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.022520 B = 0.001974 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.068224 B =14182.263810 C =14545.985297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.309 6.309 4 C 0.101 3.899 5 C -0.184 4.184 6 C -0.068 4.068 7 C -0.110 4.110 8 C 0.165 3.835 9 N -0.734 5.734 10 C 0.565 3.435 11 O -0.545 6.545 12 C -0.128 4.128 13 C -0.218 4.218 14 C -0.098 4.098 15 C -0.212 4.212 16 C 0.098 3.902 17 C -0.460 4.460 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.783 5.783 21 Si 0.911 3.089 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.265 1.265 25 C -0.092 4.092 26 C -0.096 4.096 27 C 0.066 3.934 28 F -0.132 7.132 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.400 0.600 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.285 0.715 43 H 0.134 0.866 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.487 -4.186 7.044 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.223 6.223 4 C 0.055 3.945 5 C -0.203 4.203 6 C -0.087 4.087 7 C -0.110 4.110 8 C 0.042 3.958 9 N -0.389 5.389 10 C 0.356 3.644 11 O -0.423 6.423 12 C -0.131 4.131 13 C -0.238 4.238 14 C -0.116 4.116 15 C -0.232 4.232 16 C 0.096 3.904 17 C -0.489 4.489 18 H 0.099 0.901 19 C -0.146 4.146 20 N -0.407 5.407 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.190 1.190 25 C -0.112 4.112 26 C -0.115 4.115 27 C 0.047 3.953 28 F -0.111 7.111 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.236 0.764 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.152 0.848 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -20.002 -4.076 7.941 21.903 hybrid contribution 0.277 0.035 -0.384 0.474 sum -19.725 -4.041 7.557 21.506 Atomic orbital electron populations 1.21780 0.92457 1.03000 1.03714 1.22868 0.96152 0.81533 1.01685 1.86137 1.17904 1.29785 1.88508 1.19002 0.83465 0.92910 0.99130 1.21142 0.93885 0.97786 1.07472 1.21022 0.94267 0.97154 0.96238 1.19724 0.95623 0.92499 1.03197 1.20043 0.87729 1.03021 0.85024 1.46028 1.08889 1.76662 1.07312 1.18861 0.80858 0.74665 0.90057 1.90701 1.55154 1.50041 1.46426 1.19450 0.95346 1.08258 0.90058 1.20338 0.96406 1.14393 0.92658 1.20434 0.95341 1.00804 0.95017 1.21101 0.93141 1.11152 0.97776 1.17600 0.93269 0.88817 0.90743 1.19558 0.90371 1.36385 1.02559 0.90100 1.25966 1.01665 0.92855 0.94108 1.69780 1.36816 1.22530 1.11603 0.86321 0.80920 0.80462 0.78800 1.18706 1.20226 1.18971 1.21640 0.92303 0.99347 0.97920 1.21002 0.90098 1.00833 0.99589 1.16915 0.87868 0.81013 1.09543 1.91505 1.71886 1.53391 1.94314 0.91367 0.90157 0.91443 0.91655 0.91745 0.84348 0.84538 0.90694 0.90547 0.76393 0.89273 0.88919 0.88626 0.90370 0.84815 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.28 37.16 0.38 -0.38 16 2 C 0.05 0.34 5.46 37.16 0.20 0.54 16 3 O -0.31 -3.21 10.00 -19.59 -0.20 -3.41 16 4 C 0.10 1.09 6.69 -39.18 -0.26 0.82 16 5 C -0.18 -1.63 9.04 -39.44 -0.36 -1.99 16 6 C -0.07 -0.65 9.69 -39.59 -0.38 -1.03 16 7 C -0.11 -1.19 5.25 -104.61 -0.55 -1.74 16 8 C 0.17 2.17 5.80 -5.19 -0.03 2.14 16 9 N -0.73 -11.74 5.50 -62.41 -0.34 -12.08 16 10 C 0.56 12.07 7.77 -12.32 -0.10 11.97 16 11 O -0.55 -13.37 16.33 5.33 0.09 -13.29 16 12 C -0.13 -2.98 5.87 -105.04 -0.62 -3.60 16 13 C -0.22 -4.54 9.55 -38.92 -0.37 -4.91 16 14 C -0.10 -2.07 10.01 -39.73 -0.40 -2.47 16 15 C -0.21 -5.01 9.78 -38.81 -0.38 -5.38 16 16 C 0.10 2.59 5.57 -106.87 -0.60 1.99 16 17 C -0.46 -12.02 9.05 -37.73 -0.34 -12.36 16 18 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 19 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 20 N -0.78 -20.60 10.96 55.55 0.61 -19.99 16 21 Si 0.91 18.69 29.60 -169.99 -5.03 13.66 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 25 C -0.09 -2.43 8.24 -38.44 -0.32 -2.75 16 26 C -0.10 -1.05 9.67 -39.54 -0.38 -1.43 16 27 C 0.07 0.78 7.31 -39.30 -0.29 0.49 16 28 F -0.13 -1.72 17.11 2.25 0.04 -1.68 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.36 7.65 -51.93 -0.40 -0.04 16 33 H 0.06 0.34 7.68 -51.93 -0.40 -0.06 16 34 H 0.14 0.88 6.30 -52.49 -0.33 0.55 16 35 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 37 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.40 5.73 6.48 -40.82 -0.26 5.46 16 39 H 0.09 1.54 6.38 -52.49 -0.33 1.21 16 40 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 42 H 0.29 6.91 8.30 -40.82 -0.34 6.57 16 43 H 0.13 3.83 5.74 -52.49 -0.30 3.53 16 44 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 380.24 15.07 5.73 5.73 Total: -1.00 -30.74 380.24 -9.35 -40.09 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.38 Total: 9.29 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -4.87 Total: -18.33 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.27 Total: -32.07 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.11 Total: -16.70 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.74 -9.35 -40.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071879452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.033 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds