Wall clock time and date at job start Tue Mar 31 2020 06:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42898 * 109.47024 * 2 1 4 4 C 1.35953 * 117.00362 * 180.02562 * 3 2 1 5 5 C 1.38669 * 120.05742 * 0.27199 * 4 3 2 6 6 C 1.38186 * 119.96585 * 180.23283 * 5 4 3 7 7 C 1.38259 * 120.09189 * 359.49639 * 6 5 4 8 8 C 1.50705 * 119.93073 * 180.27689 * 7 6 5 9 9 N 1.46508 * 109.47237 * 89.99973 * 8 7 6 10 10 C 1.34773 * 120.00056 * 179.97438 * 9 8 7 11 11 O 1.21544 * 119.99739 * 0.02562 * 10 9 8 12 12 C 1.47877 * 119.99896 * 179.97438 * 10 9 8 13 13 C 1.39919 * 120.02801 * 359.73149 * 12 10 9 14 14 C 1.38330 * 120.36251 * 179.73779 * 13 12 10 15 15 C 1.37751 * 120.40603 * 0.55957 * 14 13 12 16 16 C 1.40752 * 120.04476 * 359.69504 * 15 14 13 17 17 C 1.41437 * 120.17977 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99796 * 24.44159 * 17 16 15 19 19 C 1.39937 * 119.99846 * 204.43964 * 17 16 15 20 20 N 1.30825 * 120.00066 * 17.87864 * 19 17 16 21 21 Si 1.86804 * 119.99818 * 197.87957 * 19 17 16 22 22 H 1.48500 * 109.47187 * 60.00362 * 21 19 17 23 23 H 1.48499 * 109.46934 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47345 * 299.99989 * 21 19 17 25 25 C 1.39002 * 120.02512 * 179.97438 * 12 10 9 26 26 C 1.38253 * 120.12947 * 0.24730 * 7 6 5 27 27 C 1.38328 * 120.03189 * 0.02562 * 26 7 6 28 28 F 1.35097 * 120.05225 * 180.02562 * 27 26 7 29 29 H 1.08996 * 109.47519 * 59.99627 * 1 2 3 30 30 H 1.09002 * 109.47126 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47063 * 299.99364 * 1 2 3 32 32 H 1.09002 * 109.46634 * 240.00339 * 2 1 3 33 33 H 1.08991 * 109.47215 * 120.00020 * 2 1 3 34 34 H 1.07994 * 120.01785 * 0.02562 * 5 4 3 35 35 H 1.07997 * 119.94976 * 179.77114 * 6 5 4 36 36 H 1.09003 * 109.46622 * 209.99587 * 8 7 6 37 37 H 1.08999 * 109.47485 * 329.99648 * 8 7 6 38 38 H 0.96998 * 119.99633 * 359.97438 * 9 8 7 39 39 H 1.08001 * 119.81944 * 359.97438 * 13 12 10 40 40 H 1.07989 * 119.79896 * 180.27619 * 14 13 12 41 41 H 1.08008 * 119.97798 * 179.72373 * 15 14 13 42 42 H 0.96998 * 119.99700 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.20066 * 359.96103 * 25 12 10 44 44 H 1.08001 * 119.98486 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3541 1.5255 -0.0005 5 6 4.2000 0.4267 -0.0068 6 6 5.5697 0.6100 -0.0024 7 6 6.0981 1.8877 -0.0024 8 6 7.5923 2.0834 -0.0040 9 7 8.0750 2.1475 -1.3858 10 6 9.3885 2.3202 -1.6335 11 8 10.1726 2.4224 -0.7104 12 6 9.8758 2.3843 -3.0282 13 6 8.9744 2.2601 -4.0912 14 6 9.4219 2.3244 -5.3985 15 6 10.7611 2.5000 -5.6692 16 6 11.6835 2.6216 -4.6130 17 6 13.0591 2.8025 -4.8876 18 1 13.3699 3.2334 -5.8278 19 6 14.0174 2.4231 -3.9410 20 7 13.6942 1.6001 -2.9767 21 14 15.7579 3.0918 -4.0543 22 1 15.7262 4.5734 -3.9586 23 1 16.5732 2.5409 -2.9421 24 1 16.3582 2.6923 -5.3524 25 6 11.2303 2.5630 -3.2842 26 6 5.2583 2.9860 -0.0016 27 6 3.8865 2.8085 -0.0002 28 9 3.0655 3.8814 0.0001 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.7886 -0.5718 -0.0116 35 1 6.2282 -0.2459 -0.0035 36 1 7.8375 3.0129 0.5099 37 1 8.0688 1.2480 0.5089 38 1 7.4493 2.0656 -2.1224 39 1 7.9230 2.1170 -3.8899 40 1 8.7177 2.2319 -6.2119 41 1 11.1035 2.5448 -6.6925 42 1 14.3586 1.3369 -2.3208 43 1 11.9300 2.6560 -2.4669 44 1 5.6736 3.9829 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071879452.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:03 Heat of formation + Delta-G solvation = -100.223842 kcal Electronic energy + Delta-G solvation = -27925.405369 eV Core-core repulsion = 23721.082457 eV Total energy + Delta-G solvation = -4204.322911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.137 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.88071 -41.30086 -40.77511 -39.12970 -38.61904 -35.83705 -35.48292 -33.01985 -32.27010 -31.77491 -31.28588 -30.84473 -27.46347 -26.82941 -25.13041 -24.03304 -23.15688 -22.79437 -22.26809 -21.22834 -19.63730 -19.43314 -18.25506 -17.90974 -17.54991 -17.40790 -17.15166 -16.72018 -16.39883 -16.33121 -16.05893 -15.89774 -15.43319 -15.12077 -15.03972 -14.73933 -14.40261 -14.31578 -14.23694 -14.07893 -13.56616 -13.44244 -13.27563 -12.99763 -12.94720 -12.84185 -12.78844 -12.53999 -12.50206 -12.18992 -12.00312 -11.90307 -11.70833 -11.50267 -11.05493 -10.82939 -10.17175 -10.02018 -9.46085 -9.37439 -9.27277 -8.65667 -6.36931 0.01720 0.04813 0.39344 1.02434 1.37262 1.48647 1.51567 2.03269 2.11193 2.14562 2.20360 2.66354 2.79957 3.11038 3.50073 3.64611 3.71382 3.90125 4.05271 4.05688 4.14518 4.17024 4.34926 4.37239 4.41734 4.44487 4.60385 4.67943 4.80202 4.83597 4.92522 4.92998 4.97689 5.05973 5.10044 5.20385 5.23184 5.32403 5.40099 5.41224 5.53317 5.56771 5.87513 5.93846 6.06498 6.24739 6.29826 6.51366 6.68621 6.88970 6.95603 7.30786 8.30971 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.022520 B = 0.001974 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.068224 B =14182.263810 C =14545.985297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.042 3.958 3 O -0.330 6.330 4 C 0.101 3.899 5 C -0.175 4.175 6 C -0.060 4.060 7 C -0.115 4.115 8 C 0.167 3.833 9 N -0.710 5.710 10 C 0.563 3.437 11 O -0.586 6.586 12 C -0.138 4.138 13 C -0.198 4.198 14 C -0.096 4.096 15 C -0.218 4.218 16 C 0.066 3.934 17 C -0.498 4.498 18 H 0.083 0.917 19 C 0.030 3.970 20 N -0.824 5.824 21 Si 0.982 3.018 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.253 1.253 25 C -0.130 4.130 26 C -0.094 4.094 27 C 0.041 3.959 28 F -0.146 7.146 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.169 0.831 35 H 0.154 0.846 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.412 0.588 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.108 0.892 42 H 0.287 0.713 43 H 0.100 0.900 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.792 -5.506 6.372 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.032 4.032 3 O -0.244 6.244 4 C 0.054 3.946 5 C -0.194 4.194 6 C -0.079 4.079 7 C -0.116 4.116 8 C 0.044 3.956 9 N -0.363 5.363 10 C 0.353 3.647 11 O -0.468 6.468 12 C -0.141 4.141 13 C -0.217 4.217 14 C -0.114 4.114 15 C -0.238 4.238 16 C 0.064 3.936 17 C -0.527 4.527 18 H 0.102 0.898 19 C -0.185 4.185 20 N -0.449 5.449 21 Si 0.803 3.197 22 H -0.186 1.186 23 H -0.196 1.196 24 H -0.177 1.177 25 C -0.151 4.151 26 C -0.113 4.113 27 C 0.021 3.979 28 F -0.125 7.125 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.186 0.814 35 H 0.172 0.828 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.249 0.751 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.126 0.874 42 H 0.097 0.903 43 H 0.118 0.882 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -22.378 -5.407 7.251 24.136 hybrid contribution 0.676 0.383 -0.179 0.797 sum -21.701 -5.024 7.072 23.371 Atomic orbital electron populations 1.21825 0.91655 1.04329 1.03053 1.23210 0.96897 0.80044 1.03071 1.86134 1.17719 1.32291 1.88293 1.19181 0.84088 0.92937 0.98388 1.21407 0.93275 0.98592 1.06097 1.21243 0.94882 0.96968 0.94760 1.19448 0.93806 0.93257 1.05061 1.20127 0.89383 1.03031 0.83051 1.45829 1.06996 1.74262 1.09214 1.18678 0.82313 0.74838 0.88903 1.90679 1.56704 1.52181 1.47213 1.19769 0.94786 1.07398 0.92158 1.20833 0.98092 1.11001 0.91804 1.20914 0.95011 0.98985 0.96517 1.21402 0.94165 1.10465 0.97721 1.17954 0.94255 0.89886 0.91519 1.19835 0.91209 1.38184 1.03478 0.89847 1.26843 1.05779 0.92514 0.93389 1.69877 1.38206 1.24131 1.12685 0.85250 0.75707 0.79498 0.79290 1.18582 1.19620 1.17659 1.21452 0.93490 1.02893 0.97271 1.21012 0.89949 1.01135 0.99249 1.17155 0.88088 0.81341 1.11329 1.91463 1.72264 1.54139 1.94620 0.92115 0.87804 0.92046 0.90283 0.90178 0.81371 0.82786 0.91061 0.90322 0.75055 0.84792 0.84511 0.87437 0.90251 0.88201 0.83401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 71.98 0.74 -0.45 16 2 C 0.04 0.42 5.46 71.98 0.39 0.82 16 3 O -0.33 -6.23 10.00 -93.02 -0.93 -7.16 16 4 C 0.10 1.94 6.69 22.53 0.15 2.10 16 5 C -0.18 -2.50 9.04 22.36 0.20 -2.30 16 6 C -0.06 -0.94 9.69 22.26 0.22 -0.73 16 7 C -0.11 -2.24 5.25 -19.85 -0.10 -2.35 16 8 C 0.17 4.15 5.80 85.63 0.50 4.64 16 9 N -0.71 -21.44 5.50 -469.66 -2.58 -24.02 16 10 C 0.56 24.04 7.77 86.80 0.67 24.72 16 11 O -0.59 -29.70 16.33 -3.85 -0.06 -29.77 16 12 C -0.14 -6.44 5.87 -20.13 -0.12 -6.55 16 13 C -0.20 -7.68 9.55 22.70 0.22 -7.46 16 14 C -0.10 -3.80 10.01 22.18 0.22 -3.58 16 15 C -0.22 -10.16 9.78 22.77 0.22 -9.93 16 16 C 0.07 3.59 5.57 -21.32 -0.12 3.47 16 17 C -0.50 -27.10 9.05 23.47 0.21 -26.88 16 18 H 0.08 4.28 7.91 -2.91 -0.02 4.26 16 19 C 0.03 1.56 5.14 85.25 0.44 2.00 16 20 N -0.82 -45.72 10.96 21.82 0.24 -45.48 16 21 Si 0.98 39.55 29.60 68.60 2.03 41.59 16 22 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 24 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 25 C -0.13 -7.21 8.24 23.01 0.19 -7.02 16 26 C -0.09 -1.93 9.67 22.29 0.22 -1.71 16 27 C 0.04 0.91 7.31 22.45 0.16 1.07 16 28 F -0.15 -3.76 17.11 44.97 0.77 -2.99 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.59 7.65 -2.39 -0.02 0.57 16 33 H 0.08 0.56 7.68 -2.39 -0.02 0.54 16 34 H 0.17 1.35 6.30 -2.91 -0.02 1.34 16 35 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 36 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 37 H 0.08 1.98 8.08 -2.39 -0.02 1.96 16 38 H 0.41 10.43 6.48 -92.71 -0.60 9.83 16 39 H 0.13 3.96 6.38 -2.91 -0.02 3.94 16 40 H 0.14 4.21 8.06 -2.92 -0.02 4.19 16 41 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 42 H 0.29 14.69 8.30 -92.71 -0.77 13.92 16 43 H 0.10 6.14 5.74 -2.91 -0.02 6.12 16 44 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -71.43 380.24 4.32 -67.11 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 0.45 Total: 30.89 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 4.41 Total: -30.15 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -2.34 Total: -69.51 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -0.99 Total: -36.93 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.77 Total: -2.99 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.59 kcal Total: -71.43 4.32 -67.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071879452.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.118 kcal (2) G-P(sol) polarization free energy of solvation -71.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds