Wall clock time and date at job start Tue Mar 31 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 119.99882 * 2 1 4 4 H 1.48507 * 109.47030 * 239.99946 * 3 2 1 5 5 H 1.48499 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47044 * 120.00135 * 3 2 1 7 7 C 1.38951 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99774 * 180.02562 * 7 2 1 9 9 N 1.37088 * 120.00356 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00269 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00007 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00102 * 180.02562 * 10 9 7 13 13 C 1.52994 * 109.47229 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47352 * 180.02562 * 13 12 10 15 15 S 1.81401 * 109.47430 * 179.97438 * 14 13 12 16 16 C 1.76196 * 103.00401 * 179.97438 * 15 14 13 17 17 C 1.38967 * 120.06586 * 0.29299 * 16 15 14 18 18 C 1.38086 * 119.92793 * 180.21446 * 17 16 15 19 19 C 1.38380 * 120.06885 * 359.51104 * 18 17 16 20 20 Br 1.89093 * 119.93061 * 180.25790 * 19 18 17 21 21 C 1.38379 * 120.14129 * 0.23980 * 19 18 17 22 22 C 1.38087 * 120.06644 * 359.97438 * 21 19 18 23 23 H 0.97000 * 119.99862 * 359.97438 * 1 2 3 24 24 H 0.97004 * 119.99711 * 0.02562 * 9 7 2 25 25 H 1.09003 * 109.47299 * 59.99920 * 12 10 9 26 26 H 1.08999 * 109.47271 * 299.99675 * 12 10 9 27 27 H 1.08994 * 109.47591 * 59.99854 * 13 12 10 28 28 H 1.09012 * 109.47292 * 299.99697 * 13 12 10 29 29 H 1.08995 * 109.47610 * 59.99472 * 14 13 12 30 30 H 1.08999 * 109.46984 * 299.99582 * 14 13 12 31 31 H 1.07995 * 120.04262 * 0.02562 * 17 16 15 32 32 H 1.08002 * 119.96910 * 179.79617 * 18 17 16 33 33 H 1.07999 * 119.96294 * 180.02562 * 21 19 18 34 34 H 1.08006 * 120.02797 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 6 2.2380 -6.0258 -0.0016 14 6 1.4730 -7.3508 -0.0029 15 16 2.6518 -8.7296 -0.0043 16 6 1.6045 -10.1466 -0.0048 17 6 0.2235 -9.9916 -0.0103 18 6 -0.5946 -11.1040 -0.0063 19 6 -0.0406 -12.3721 -0.0069 20 35 -1.1646 -13.8927 -0.0087 21 6 1.3342 -12.5298 -0.0067 22 6 2.1577 -11.4213 -0.0063 23 1 -0.4850 0.8401 0.0004 24 1 0.3534 -2.3906 -0.0005 25 1 0.6175 -4.9205 -0.8914 26 1 0.6168 -4.9209 0.8886 27 1 2.8647 -5.9685 0.8883 28 1 2.8647 -5.9677 -0.8917 29 1 0.8466 -7.4080 -0.8930 30 1 0.8461 -7.4092 0.8869 31 1 -0.2095 -9.0023 -0.0147 32 1 -1.6679 -10.9843 -0.0072 33 1 1.7635 -13.5208 -0.0076 34 1 3.2306 -11.5451 -0.0065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071888269.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:58 Heat of formation + Delta-G solvation = -28.957055 kcal Electronic energy + Delta-G solvation = -17749.649493 eV Core-core repulsion = 14626.103393 eV Total energy + Delta-G solvation = -3123.546100 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 342.998 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.40794 -38.34179 -34.58190 -33.70187 -32.75933 -31.53952 -31.25186 -29.64004 -28.01780 -24.83731 -23.28596 -22.85128 -21.63374 -19.17267 -18.08390 -17.89908 -16.46700 -15.94989 -15.63798 -15.62137 -15.06830 -14.52058 -14.29388 -13.98169 -13.95750 -13.77472 -13.56197 -12.78508 -12.23132 -12.04587 -11.85961 -11.69799 -11.46659 -11.43554 -11.13488 -11.08205 -10.64361 -10.59223 -10.46749 -10.35465 -10.23681 -9.69386 -9.54673 -9.48116 -8.45384 -8.01521 -7.64068 -6.45607 -3.86715 0.57829 0.88816 1.16252 1.35612 2.20636 3.13675 3.17528 3.23654 3.28104 3.86243 4.14026 4.33401 4.46216 4.64754 4.81136 4.84866 4.95589 5.12614 5.21128 5.22942 5.30968 5.49660 5.58717 5.63364 5.64993 5.79395 5.81954 5.89714 6.29371 6.32191 6.37568 6.48592 7.51452 8.01277 8.55905 9.13250 9.49864 10.00782 10.71841 Molecular weight = 343.00amu Principal moments of inertia in cm(-1) A = 0.036456 B = 0.001631 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.874929 B =17165.421843 C =17907.547117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.303 4.303 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.438 3.562 11 O -0.597 6.597 12 C -0.124 4.124 13 C -0.083 4.083 14 C -0.109 4.109 15 S -0.098 6.098 16 C -0.066 4.066 17 C -0.131 4.131 18 C -0.068 4.068 19 C -0.103 4.103 20 Br -0.055 7.055 21 C -0.071 4.071 22 C -0.099 4.099 23 H 0.273 0.727 24 H 0.393 0.607 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.863 -28.422 -0.020 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.432 4.432 8 H 0.121 0.879 9 N -0.196 5.196 10 C 0.224 3.776 11 O -0.483 6.483 12 C -0.167 4.167 13 C -0.122 4.122 14 C -0.257 4.257 15 S 0.150 5.850 16 C -0.180 4.180 17 C -0.156 4.156 18 C -0.090 4.090 19 C -0.186 4.186 20 Br 0.031 6.969 21 C -0.093 4.093 22 C -0.124 4.124 23 H 0.082 0.918 24 H 0.226 0.774 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.354 -28.609 -0.022 28.805 hybrid contribution -1.485 1.089 0.003 1.842 sum -4.840 -27.520 -0.019 27.942 Atomic orbital electron populations 1.69603 1.05948 1.28346 1.50298 1.25282 0.95653 0.99794 0.97180 0.85909 0.78776 0.80378 0.79114 1.19857 1.20940 1.19866 1.19680 0.93394 0.82325 1.47824 0.87944 1.41899 1.09246 1.04697 1.63795 1.19862 0.88271 0.84964 0.84489 1.90525 1.13997 1.87402 1.56340 1.21443 0.98557 0.93679 1.03016 1.20984 0.97544 0.88782 1.04916 1.23888 1.00172 0.95950 1.05684 1.85835 1.12876 0.95614 1.90710 1.22096 0.96650 0.97989 1.01285 1.21265 0.91943 0.99468 1.02956 1.21026 1.00363 0.90395 0.97216 1.21748 0.94186 0.92361 1.10282 1.96719 1.65363 1.37061 1.97789 1.21033 0.91256 0.99383 0.97642 1.20789 1.00250 0.89958 1.01433 0.91760 0.77361 0.90263 0.90259 0.90198 0.90205 0.89159 0.89152 0.84686 0.84695 0.84593 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.37 9.68 -14.94 -0.14 -8.52 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.00 5.29 -10.97 -0.06 -14.06 16 10 C 0.44 10.05 7.78 -10.99 -0.09 9.96 16 11 O -0.60 -15.90 15.56 5.55 0.09 -15.82 16 12 C -0.12 -1.99 5.70 -27.89 -0.16 -2.15 16 13 C -0.08 -1.20 4.51 -26.73 -0.12 -1.32 16 14 C -0.11 -1.19 4.33 37.16 0.16 -1.02 16 15 S -0.10 -1.12 21.92 -107.50 -2.36 -3.47 16 16 C -0.07 -0.68 6.11 -39.05 -0.24 -0.92 16 17 C -0.13 -1.23 9.36 -39.37 -0.37 -1.60 16 18 C -0.07 -0.60 9.78 -39.58 -0.39 -0.99 16 19 C -0.10 -0.91 6.23 -39.48 -0.25 -1.16 16 20 Br -0.05 -0.44 33.69 -68.01 -2.29 -2.73 16 21 C -0.07 -0.60 9.78 -39.58 -0.39 -0.99 16 22 C -0.10 -0.91 9.79 -39.37 -0.39 -1.29 16 23 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 28 H 0.08 1.27 8.10 -51.92 -0.42 0.85 16 29 H 0.09 0.87 7.74 -51.93 -0.40 0.47 16 30 H 0.09 0.87 7.76 -51.92 -0.40 0.47 16 31 H 0.14 1.10 5.88 -52.49 -0.31 0.79 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -30.51 330.34 -10.30 -40.81 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -3.90 Total: 7.46 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -2.46 Total: -9.49 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.67 Total: -37.59 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.09 Total: -15.82 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -2.36 Total: -3.47 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -2.29 Total: -2.73 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.51 -10.30 -40.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071888269.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.850 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds