Wall clock time and date at job start Tue Mar 31 2020 07:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00227 * 2 1 4 4 H 1.48507 * 109.46875 * 269.99840 * 3 2 1 5 5 H 1.48495 * 109.47434 * 29.99677 * 3 2 1 6 6 H 1.48495 * 109.47298 * 150.00200 * 3 2 1 7 7 C 1.37878 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99457 * 359.97438 * 7 2 1 9 9 C 1.50690 * 120.00361 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47423 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99960 * 89.99738 * 10 9 7 12 12 O 1.21549 * 119.99808 * 45.90148 * 11 10 9 13 13 C 1.47844 * 120.00128 * 225.89800 * 11 10 9 14 14 C 1.39613 * 120.26861 * 327.78914 * 13 11 10 15 15 C 1.37627 * 119.61717 * 180.14634 * 14 13 11 16 16 C 1.39075 * 120.75754 * 0.02562 * 15 14 13 17 17 C 1.37839 * 119.90071 * 359.73692 * 16 15 14 18 18 C 1.38645 * 119.82660 * 0.39603 * 17 16 15 19 19 C 1.50654 * 122.54305 * 180.75413 * 17 16 15 20 20 C 1.52716 * 110.61193 * 341.99606 * 19 17 16 21 21 C 1.53319 * 108.38824 * 51.15257 * 20 19 17 22 22 C 1.50685 * 117.61539 * 179.41092 * 16 15 14 23 23 C 1.46498 * 119.99770 * 270.00157 * 10 9 7 24 24 C 1.53180 * 109.54395 * 212.41321 * 23 10 9 25 25 C 1.53087 * 109.16504 * 183.15083 * 24 23 10 26 26 O 1.42906 * 109.41210 * 57.61553 * 25 24 23 27 27 C 1.42902 * 114.09762 * 298.83683 * 26 25 24 28 28 C 1.53095 * 109.41097 * 61.15931 * 27 26 25 29 29 H 0.97004 * 119.99508 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47398 * 60.00302 * 9 7 2 31 31 H 1.09003 * 109.47058 * 300.00225 * 9 7 2 32 32 H 1.07996 * 120.18673 * 0.17873 * 14 13 11 33 33 H 1.07998 * 119.61816 * 179.97438 * 15 14 13 34 34 H 1.07995 * 119.78505 * 179.70602 * 18 17 16 35 35 H 1.09005 * 109.24893 * 102.29040 * 19 17 16 36 36 H 1.09005 * 109.25064 * 221.70530 * 19 17 16 37 37 H 1.08998 * 109.68570 * 170.87887 * 20 19 17 38 38 H 1.08999 * 109.68424 * 291.42993 * 20 19 17 39 39 H 1.09007 * 109.67990 * 49.84352 * 21 20 19 40 40 H 1.08993 * 109.68599 * 170.39493 * 21 20 19 41 41 H 1.08996 * 109.24958 * 282.54270 * 22 16 15 42 42 H 1.09001 * 109.24690 * 41.96575 * 22 16 15 43 43 H 1.08995 * 109.54810 * 332.68559 * 23 10 9 44 44 H 1.08998 * 109.52530 * 303.06344 * 24 23 10 45 45 H 1.09011 * 109.51933 * 63.25001 * 24 23 10 46 46 H 1.08995 * 109.48703 * 297.63173 * 25 24 23 47 47 H 1.09002 * 109.47963 * 177.59234 * 25 24 23 48 48 H 1.09000 * 109.47919 * 301.18379 * 27 26 25 49 49 H 1.08996 * 109.49139 * 181.14697 * 27 26 25 50 50 H 1.09004 * 109.51995 * 182.48709 * 28 27 26 51 51 H 1.09000 * 109.52412 * 62.29779 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5114 -1.1941 0.0000 10 7 3.9997 -2.5754 0.0001 11 6 4.2239 -3.2110 -1.1671 12 8 4.8260 -2.6476 -2.0600 13 6 3.7374 -4.5935 -1.3612 14 6 3.6711 -5.4746 -0.2802 15 6 3.2190 -6.7595 -0.4768 16 6 2.8278 -7.1905 -1.7399 17 6 2.8863 -6.3239 -2.8102 18 6 3.3428 -5.0281 -2.6242 19 6 2.4621 -6.7225 -4.1997 20 6 2.4096 -8.2431 -4.3304 21 6 1.5713 -8.7994 -3.1734 22 6 2.3573 -8.6154 -1.8770 23 6 4.2443 -3.2657 1.2689 24 6 5.4110 -4.2444 1.1032 25 6 5.6082 -5.0171 2.4099 26 8 4.3967 -5.6953 2.7481 27 6 3.2820 -4.8270 2.9618 28 6 2.9914 -4.0466 1.6772 29 1 -0.4849 0.8401 0.0004 30 1 3.8752 -0.6798 0.8895 31 1 3.8744 -0.6809 -0.8905 32 1 3.9724 -5.1494 0.7046 33 1 3.1681 -7.4412 0.3594 34 1 3.3929 -4.3511 -3.4642 35 1 1.4745 -6.3097 -4.4063 36 1 3.1754 -6.3242 -4.9214 37 1 1.9495 -8.5144 -5.2806 38 1 3.4192 -8.6509 -4.2813 39 1 0.6274 -8.2577 -3.1105 40 1 1.3766 -9.8592 -3.3374 41 1 3.2211 -9.2801 -1.8831 42 1 1.7179 -8.8657 -1.0305 43 1 4.4863 -2.5351 2.0407 44 1 5.1886 -4.9431 0.2968 45 1 6.3199 -3.6910 0.8665 46 1 5.8704 -4.3219 3.2074 47 1 6.4095 -5.7453 2.2842 48 1 3.5139 -4.1292 3.7664 49 1 2.4076 -5.4180 3.2338 50 1 2.1698 -3.3517 1.8512 51 1 2.7201 -4.7414 0.8824 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071889106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:54 Heat of formation + Delta-G solvation = 12.656533 kcal Electronic energy + Delta-G solvation = -32093.391630 eV Core-core repulsion = 28153.256978 eV Total energy + Delta-G solvation = -3940.134651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.50432 -39.37000 -38.43140 -35.95896 -35.46725 -33.08985 -32.46279 -31.67028 -31.06132 -30.23293 -28.80955 -27.81953 -24.71976 -24.22741 -23.49388 -23.19716 -22.49327 -21.74121 -20.55035 -19.96953 -17.98964 -17.07013 -16.86220 -16.43398 -16.15956 -15.86286 -15.35632 -15.18011 -14.65026 -14.52848 -14.44606 -14.32357 -14.06577 -13.88445 -13.77480 -13.48802 -13.15729 -12.77490 -12.61834 -12.40944 -12.34911 -12.22837 -12.04057 -11.78475 -11.69172 -11.34294 -11.24807 -11.01246 -10.97947 -10.80347 -10.72496 -10.60336 -10.53119 -10.41171 -10.14953 -9.74428 -9.50675 -9.31039 -9.12237 -8.65796 -8.49957 -8.14916 -7.54944 -6.15520 -4.15411 1.21029 1.58504 3.03115 3.24409 3.31124 3.33787 3.68784 3.86414 4.02604 4.33834 4.62269 4.65853 4.75361 4.81284 4.90858 4.93438 5.01868 5.07650 5.09898 5.17492 5.19806 5.27058 5.31331 5.47829 5.48860 5.50126 5.55159 5.55983 5.67067 5.72443 5.75944 5.79098 5.86846 5.90461 5.93415 5.98165 6.01185 6.15241 6.18995 6.23812 6.27331 6.33107 6.60040 6.63592 6.65632 6.79011 6.80279 6.86206 7.17189 7.18572 7.47174 7.53504 8.19525 8.41138 8.64970 8.89792 9.45021 10.97045 Molecular weight = 343.19amu Principal moments of inertia in cm(-1) A = 0.010051 B = 0.004410 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.058752 B = 6347.411867 C = 7808.064911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.872 3.128 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.225 3.775 10 N -0.627 5.627 11 C 0.591 3.409 12 O -0.523 6.523 13 C -0.137 4.137 14 C -0.149 4.149 15 C -0.135 4.135 16 C -0.062 4.062 17 C -0.093 4.093 18 C -0.063 4.063 19 C -0.079 4.079 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.080 4.080 23 C 0.161 3.839 24 C -0.232 4.232 25 C 0.067 3.933 26 O -0.385 6.385 27 C 0.060 3.940 28 C -0.227 4.227 29 H 0.265 0.735 30 H 0.029 0.971 31 H 0.033 0.967 32 H 0.212 0.788 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.122 0.878 45 H 0.080 0.920 46 H 0.054 0.946 47 H 0.097 0.903 48 H 0.053 0.947 49 H 0.097 0.903 50 H 0.100 0.900 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.129 -17.315 1.004 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.576 4.576 8 H 0.097 0.903 9 C 0.105 3.895 10 N -0.360 5.360 11 C 0.381 3.619 12 O -0.399 6.399 13 C -0.141 4.141 14 C -0.165 4.165 15 C -0.153 4.153 16 C -0.062 4.062 17 C -0.093 4.093 18 C -0.082 4.082 19 C -0.116 4.116 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.117 4.117 23 C 0.056 3.944 24 C -0.269 4.269 25 C -0.010 4.010 26 O -0.304 6.304 27 C -0.017 4.017 28 C -0.264 4.264 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.227 0.773 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.139 0.861 45 H 0.099 0.901 46 H 0.072 0.928 47 H 0.115 0.885 48 H 0.071 0.929 49 H 0.115 0.885 50 H 0.118 0.882 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.285 -17.020 0.523 18.521 hybrid contribution 0.098 1.524 0.032 1.528 sum 7.383 -15.496 0.555 17.174 Atomic orbital electron populations 1.69894 1.06152 1.27042 1.50115 1.24844 0.94726 0.98867 0.94349 0.86905 0.80308 0.83915 0.78957 1.19926 1.21005 1.18973 1.21475 0.89286 0.94967 1.51846 0.90277 1.19656 0.95154 0.77192 0.97539 1.47332 1.69802 1.15655 1.03206 1.18105 0.76706 0.85039 0.82078 1.90658 1.36042 1.68690 1.44495 1.20295 1.04159 0.95158 0.94492 1.23680 0.96873 0.93711 1.02244 1.21105 1.01336 0.96333 0.96524 1.19771 0.98087 0.95404 0.92944 1.19452 1.01226 0.93348 0.95233 1.21189 0.95880 0.94946 0.96218 1.20448 1.01865 0.96088 0.93233 1.21530 1.00455 0.95232 0.98328 1.21553 0.98958 1.00776 0.94523 1.20489 0.99857 0.92928 0.98452 1.20858 0.92881 0.93614 0.87067 1.23859 1.00181 1.01047 1.01834 1.22513 0.87393 0.96448 0.94688 1.87912 1.18423 1.34129 1.89923 1.22683 0.89073 0.93476 0.96467 1.23885 1.00663 1.02135 0.99715 0.92508 0.95303 0.94933 0.77268 0.85778 0.85551 0.90616 0.90840 0.91607 0.91727 0.91489 0.91646 0.90734 0.90732 0.89404 0.86057 0.90111 0.92797 0.88534 0.92860 0.88486 0.88155 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 21.16 27.47 -169.99 -4.67 16.49 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.54 -14.82 9.73 -34.44 -0.34 -15.16 16 8 H 0.08 2.37 7.80 -52.48 -0.41 1.96 16 9 C 0.22 5.45 4.48 -5.20 -0.02 5.43 16 10 N -0.63 -13.20 2.41 -168.37 -0.41 -13.61 16 11 C 0.59 12.81 5.81 -12.33 -0.07 12.74 16 12 O -0.52 -12.70 16.94 5.32 0.09 -12.61 16 13 C -0.14 -2.57 5.53 -105.07 -0.58 -3.15 16 14 C -0.15 -2.38 4.21 -39.29 -0.17 -2.54 16 15 C -0.13 -1.90 9.58 -39.49 -0.38 -2.27 16 16 C -0.06 -0.83 5.75 -104.47 -0.60 -1.43 16 17 C -0.09 -1.35 5.73 -104.64 -0.60 -1.95 16 18 C -0.06 -1.11 9.16 -39.05 -0.36 -1.47 16 19 C -0.08 -0.93 5.66 -28.05 -0.16 -1.09 16 20 C -0.12 -1.11 5.98 -26.71 -0.16 -1.27 16 21 C -0.12 -1.11 5.98 -26.71 -0.16 -1.27 16 22 C -0.08 -0.82 5.67 -28.04 -0.16 -0.98 16 23 C 0.16 2.68 2.57 -67.75 -0.17 2.51 16 24 C -0.23 -3.24 4.45 -26.59 -0.12 -3.35 16 25 C 0.07 0.75 6.82 37.20 0.25 1.00 16 26 O -0.38 -4.81 10.08 -35.23 -0.36 -5.17 16 27 C 0.06 0.75 6.83 37.21 0.25 1.01 16 28 C -0.23 -3.61 5.15 -26.59 -0.14 -3.75 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.03 0.67 6.93 -51.93 -0.36 0.31 16 31 H 0.03 0.84 7.01 -51.93 -0.36 0.48 16 32 H 0.21 3.14 0.49 -65.76 -0.03 3.10 16 33 H 0.12 1.48 8.05 -52.49 -0.42 1.06 16 34 H 0.13 2.24 7.94 -52.49 -0.42 1.83 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 39 H 0.07 0.66 8.10 -51.92 -0.42 0.24 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 43 H 0.09 1.41 7.87 -51.93 -0.41 1.00 16 44 H 0.12 1.82 3.32 -71.33 -0.24 1.59 16 45 H 0.08 1.11 8.14 -51.92 -0.42 0.68 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.10 1.86 7.66 -51.93 -0.40 1.46 16 51 H 0.12 1.97 3.58 -81.92 -0.29 1.68 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -32.28 380.85 -10.59 -42.88 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -8.00 Total: 7.24 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -3.77 Total: -14.99 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.37 Total: -39.57 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.26 Total: -17.78 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.28 -10.59 -42.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071889106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.532 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds