Wall clock time and date at job start Tue Mar 31 2020 04:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00322 * 2 1 4 4 H 1.48501 * 109.46991 * 239.99929 * 3 2 1 5 5 H 1.48493 * 109.47004 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47141 * 119.99994 * 3 2 1 7 7 C 1.37883 * 119.99502 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99833 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00025 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46998 * 184.80922 * 9 7 2 11 11 C 1.46900 * 111.00173 * 60.11963 * 10 9 7 12 12 C 1.52994 * 109.46996 * 66.04237 * 11 10 9 13 13 H 1.08993 * 110.75732 * 302.98114 * 12 11 10 14 14 C 1.55574 * 110.83470 * 179.30946 * 12 11 10 15 15 C 1.54948 * 100.82498 * 207.68695 * 14 12 11 16 16 O 1.43645 * 105.22438 * 36.44002 * 15 14 12 17 17 C 1.43237 * 109.97305 * 335.52707 * 16 15 14 18 18 C 1.46898 * 111.00241 * 296.16303 * 10 9 7 19 19 N 1.46503 * 109.47295 * 288.57254 * 18 10 9 20 20 C 1.35043 * 125.93156 * 95.38782 * 19 18 10 21 21 C 1.35086 * 107.97795 * 179.97438 * 20 19 18 22 22 C 1.40842 * 107.84765 * 359.97438 * 21 20 19 23 23 C 1.48426 * 126.03496 * 180.02562 * 22 21 20 24 24 C 1.39328 * 120.11811 * 359.72412 * 23 22 21 25 25 C 1.38017 * 119.87754 * 179.72906 * 24 23 22 26 26 C 1.38324 * 120.11811 * 0.56537 * 25 24 23 27 27 C 1.38317 * 120.24261 * 359.70658 * 26 25 24 28 28 C 1.38020 * 120.11722 * 359.97438 * 27 26 25 29 29 N 1.31613 * 107.92750 * 359.74481 * 22 21 20 30 30 H 0.97001 * 119.99461 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.46940 * 64.81400 * 9 7 2 32 32 H 1.08999 * 109.47721 * 304.80949 * 9 7 2 33 33 H 1.09006 * 109.46752 * 306.04631 * 11 10 9 34 34 H 1.08994 * 109.47084 * 186.05062 * 11 10 9 35 35 H 1.08996 * 111.22336 * 89.78924 * 14 12 11 36 36 H 1.08999 * 111.13182 * 325.54730 * 14 12 11 37 37 H 1.08999 * 110.31147 * 277.47786 * 15 14 12 38 38 H 1.08996 * 110.31329 * 155.40699 * 15 14 12 39 39 H 1.09000 * 109.83784 * 121.22199 * 17 16 15 40 40 H 1.09000 * 109.83329 * 242.19588 * 17 16 15 41 41 H 1.09005 * 109.47146 * 48.57028 * 18 10 9 42 42 H 1.09002 * 109.47757 * 168.57155 * 18 10 9 43 43 H 1.08001 * 126.00891 * 359.93863 * 20 19 18 44 44 H 1.08005 * 126.07259 * 179.97438 * 21 20 19 45 45 H 1.07997 * 120.06197 * 359.97438 * 24 23 22 46 46 H 1.07999 * 119.94427 * 180.27762 * 25 24 23 47 47 H 1.08003 * 119.87835 * 179.72613 * 26 25 24 48 48 H 1.08003 * 119.94185 * 180.02562 * 27 26 25 49 49 H 1.08006 * 120.05925 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2012 -3.6134 0.1150 11 6 2.9746 -3.5188 1.3603 12 6 2.0405 -3.7115 2.5566 13 1 1.2326 -2.9802 2.5376 14 6 2.8313 -3.6344 3.8941 15 6 1.9494 -4.5250 4.8053 16 8 1.4750 -5.5812 3.9552 17 6 1.4794 -5.1494 2.5895 18 6 3.0898 -3.6708 -1.0534 19 7 2.3321 -4.1274 -2.2212 20 6 1.7566 -3.3356 -3.1516 21 6 1.1556 -4.1317 -4.0625 22 6 1.3711 -5.4689 -3.6762 23 6 0.8849 -6.6741 -4.3933 24 6 0.1359 -6.5386 -5.5603 25 6 -0.3089 -7.6627 -6.2261 26 6 -0.0222 -8.9219 -5.7305 27 6 0.7162 -9.0620 -4.5694 28 6 1.1715 -7.9447 -3.8991 29 7 2.0848 -5.4611 -2.5704 30 1 -0.4849 0.8401 0.0004 31 1 0.6901 -2.5949 -0.9303 32 1 0.5615 -2.5207 0.8435 33 1 3.4459 -2.5377 1.4217 34 1 3.7427 -4.2920 1.3706 35 1 2.8751 -2.6116 4.2682 36 1 3.8313 -4.0538 3.7841 37 1 1.1108 -3.9504 5.1986 38 1 2.5428 -4.9348 5.6226 39 1 2.1137 -5.8075 1.9956 40 1 0.4633 -5.1589 2.1953 41 1 3.4967 -2.6787 -1.2496 42 1 3.9060 -4.3656 -0.8556 43 1 1.7734 -2.2558 -3.1647 44 1 0.6072 -3.8014 -4.9324 45 1 -0.0929 -5.5559 -5.9452 46 1 -0.8858 -7.5590 -7.1332 47 1 -0.3759 -9.7989 -6.2523 48 1 0.9376 -10.0476 -4.1870 49 1 1.7477 -8.0553 -2.9923 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071890227.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:49 Heat of formation + Delta-G solvation = 63.533456 kcal Electronic energy + Delta-G solvation = -29441.287863 eV Core-core repulsion = 25562.963630 eV Total energy + Delta-G solvation = -3878.324233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.72519 -39.21189 -38.75260 -36.89904 -33.09054 -32.83406 -31.75897 -30.96452 -29.97448 -29.46163 -28.93652 -27.17024 -25.39182 -24.26932 -22.93057 -22.59347 -22.12085 -21.18265 -20.14852 -19.55891 -19.39472 -17.27466 -16.75063 -16.41292 -15.92958 -15.55612 -15.37586 -15.21459 -14.86142 -14.66666 -14.37804 -14.07363 -13.79689 -13.52376 -13.37193 -13.13682 -13.06876 -12.80704 -12.55295 -12.51396 -12.44129 -11.81033 -11.40430 -11.26630 -11.21126 -11.14768 -11.08795 -11.02160 -10.86121 -10.60905 -10.56465 -10.22232 -10.17568 -10.13454 -9.86305 -9.60874 -9.19412 -8.88087 -8.63242 -8.33359 -7.95789 -7.49560 -6.22793 -4.34665 1.13492 1.47641 2.46841 2.99959 3.13452 3.20760 3.21901 3.23810 4.11478 4.20357 4.22111 4.55026 4.75520 4.91499 4.94369 5.00490 5.07968 5.12337 5.18052 5.23803 5.33171 5.44867 5.51162 5.56063 5.60422 5.63505 5.70323 5.83115 5.92006 5.93774 5.96069 6.02606 6.06402 6.09381 6.13193 6.25129 6.32551 6.38364 6.45745 6.50093 6.54362 6.69721 6.75878 6.88856 6.99826 7.09286 7.29426 7.31819 7.50739 7.67820 7.70622 7.94818 8.02640 8.21173 8.74274 9.33512 10.82025 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008821 B = 0.003408 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3173.435847 B = 8214.063415 C =10710.704429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.887 3.113 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.562 4.562 8 H 0.056 0.944 9 C 0.184 3.816 10 N -0.554 5.554 11 C 0.082 3.918 12 C -0.109 4.109 13 H 0.096 0.904 14 C -0.151 4.151 15 C 0.053 3.947 16 O -0.395 6.395 17 C 0.067 3.933 18 C 0.302 3.698 19 N -0.341 5.341 20 C 0.082 3.918 21 C -0.274 4.274 22 C 0.090 3.910 23 C 0.003 3.997 24 C -0.100 4.100 25 C -0.123 4.123 26 C -0.124 4.124 27 C -0.123 4.123 28 C -0.096 4.096 29 N -0.277 5.277 30 H 0.265 0.735 31 H 0.031 0.969 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.175 0.825 44 H 0.142 0.858 45 H 0.126 0.874 46 H 0.122 0.878 47 H 0.119 0.881 48 H 0.121 0.879 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 -10.511 -4.557 12.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.132 4.132 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.600 4.600 8 H 0.074 0.926 9 C 0.058 3.942 10 N -0.279 5.279 11 C -0.047 4.047 12 C -0.128 4.128 13 H 0.114 0.886 14 C -0.189 4.189 15 C -0.024 4.024 16 O -0.315 6.315 17 C -0.009 4.009 18 C 0.091 3.909 19 N -0.124 5.124 20 C -0.064 4.064 21 C -0.303 4.303 22 C -0.074 4.074 23 C 0.001 3.999 24 C -0.120 4.120 25 C -0.141 4.141 26 C -0.143 4.143 27 C -0.141 4.141 28 C -0.116 4.116 29 N -0.100 5.100 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.192 0.808 44 H 0.159 0.841 45 H 0.144 0.856 46 H 0.140 0.860 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.852 -11.630 -3.406 12.716 hybrid contribution 0.386 2.760 -0.635 2.858 sum 4.238 -8.870 -4.042 10.629 Atomic orbital electron populations 1.69930 1.06023 1.27263 1.48669 1.24915 0.94698 0.99052 0.94524 0.86736 0.79750 0.83348 0.78694 1.20167 1.21090 1.20221 1.21573 0.92990 0.91971 1.53501 0.92614 1.19852 0.91038 0.84844 0.98428 1.62275 1.17687 1.47768 1.00133 1.21753 0.94333 1.00422 0.88172 1.22706 0.98991 0.97536 0.93600 0.88590 1.23306 0.99302 1.00837 0.95429 1.23284 0.96590 0.88914 0.93589 1.88345 1.87245 1.38186 1.17705 1.23090 1.01191 0.94700 0.81928 1.21987 0.89139 0.98845 0.80916 1.48665 1.41338 1.02858 1.19491 1.22576 0.95652 0.98464 0.89730 1.21294 1.12504 0.91420 1.05118 1.20569 0.99441 0.92967 0.94400 1.17903 0.97533 0.90298 0.94148 1.21152 0.97266 0.99121 0.94481 1.21023 1.00624 0.92390 1.00067 1.21164 0.99146 0.97315 0.96642 1.21076 0.98767 0.98457 0.95832 1.21291 0.99064 0.91421 0.99800 1.77410 1.20036 0.98070 1.14455 0.92473 0.95123 0.94203 0.92641 0.92475 0.90002 0.90738 0.92544 0.90443 0.91222 0.91568 0.89875 0.89708 0.80771 0.84070 0.85561 0.85998 0.86329 0.86074 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.96 13.29 55.43 0.74 -23.23 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 19.60 29.54 -169.99 -5.02 14.58 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.56 -13.49 7.34 -34.44 -0.25 -13.75 16 8 H 0.06 1.30 5.95 -52.49 -0.31 0.99 16 9 C 0.18 4.25 4.79 -4.98 -0.02 4.22 16 10 N -0.55 -10.68 4.64 -239.99 -1.11 -11.79 16 11 C 0.08 1.39 4.07 -3.83 -0.02 1.37 16 12 C -0.11 -1.82 2.88 -88.53 -0.25 -2.07 16 13 H 0.10 1.86 6.51 -51.93 -0.34 1.53 16 14 C -0.15 -2.05 6.64 -24.33 -0.16 -2.21 16 15 C 0.05 0.72 7.77 38.19 0.30 1.01 16 16 O -0.40 -6.61 11.36 -35.23 -0.40 -7.01 16 17 C 0.07 1.13 7.23 37.88 0.27 1.41 16 18 C 0.30 5.38 6.02 -63.31 -0.38 5.00 16 19 N -0.34 -6.37 3.60 -64.41 -0.23 -6.60 16 20 C 0.08 1.48 10.16 -17.26 -0.18 1.30 16 21 C -0.27 -4.59 10.18 -39.72 -0.40 -4.99 16 22 C 0.09 1.57 6.99 -82.78 -0.58 0.99 16 23 C 0.00 0.05 5.88 -104.89 -0.62 -0.57 16 24 C -0.10 -1.27 9.58 -39.26 -0.38 -1.65 16 25 C -0.12 -1.32 10.03 -39.63 -0.40 -1.72 16 26 C -0.12 -1.29 10.04 -39.52 -0.40 -1.69 16 27 C -0.12 -1.41 10.03 -39.63 -0.40 -1.81 16 28 C -0.10 -1.34 9.69 -39.26 -0.38 -1.72 16 29 N -0.28 -5.26 12.24 33.43 0.41 -4.85 16 30 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.03 0.79 6.65 -51.93 -0.35 0.44 16 32 H 0.04 1.02 6.43 -51.93 -0.33 0.69 16 33 H 0.06 1.01 6.39 -51.93 -0.33 0.67 16 34 H 0.06 0.86 7.80 -51.93 -0.40 0.46 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.07 0.92 8.04 -51.93 -0.42 0.51 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.18 7.76 -51.93 -0.40 0.77 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.08 1.50 6.35 -51.93 -0.33 1.17 16 42 H 0.08 1.36 7.82 -51.93 -0.41 0.95 16 43 H 0.18 3.02 8.06 -52.49 -0.42 2.59 16 44 H 0.14 1.98 7.34 -52.48 -0.39 1.60 16 45 H 0.13 1.42 7.04 -52.49 -0.37 1.05 16 46 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 48 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 49 H 0.13 1.83 7.85 -52.48 -0.41 1.42 16 LS Contribution 395.79 15.07 5.96 5.96 Total: -1.00 -28.66 395.79 -11.30 -39.96 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -7.31 Total: 8.09 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -4.34 Total: -15.12 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.20 Total: -46.47 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.40 Total: -7.01 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.66 -11.30 -39.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071890227.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.498 kcal (2) G-P(sol) polarization free energy of solvation -28.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds