Wall clock time and date at job start Tue Mar 31 2020 04:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99968 * 2 1 4 4 H 1.48508 * 109.46758 * 269.99427 * 3 2 1 5 5 H 1.48496 * 109.47351 * 29.99298 * 3 2 1 6 6 H 1.48501 * 109.47087 * 149.99543 * 3 2 1 7 7 C 1.37882 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99567 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99863 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.46856 * 184.94785 * 9 7 2 11 11 C 1.46899 * 110.99981 * 291.21677 * 10 9 7 12 12 C 1.52999 * 109.47189 * 304.58690 * 11 10 9 13 13 H 1.08998 * 110.45320 * 48.61779 * 12 11 10 14 14 C 1.54509 * 110.50934 * 171.21751 * 12 11 10 15 15 C 1.54483 * 104.05992 * 118.64748 * 14 12 11 16 16 O 1.44421 * 104.80312 * 23.97497 * 15 14 12 17 17 C 1.44647 * 105.37247 * 319.57043 * 16 15 14 18 18 C 1.46893 * 110.99971 * 167.25731 * 10 9 7 19 19 N 1.46500 * 109.47201 * 189.00771 * 18 10 9 20 20 C 1.35041 * 125.92836 * 95.03763 * 19 18 10 21 21 C 1.35081 * 107.97916 * 179.97438 * 20 19 18 22 22 C 1.40851 * 107.85136 * 0.02562 * 21 20 19 23 23 C 1.48419 * 126.03939 * 180.02562 * 22 21 20 24 24 C 1.39320 * 120.11743 * 359.71617 * 23 22 21 25 25 C 1.38024 * 119.87758 * 179.72905 * 24 23 22 26 26 C 1.38320 * 120.11857 * 0.57474 * 25 24 23 27 27 C 1.38330 * 120.24080 * 359.70289 * 26 25 24 28 28 C 1.38015 * 120.11655 * 359.97438 * 27 26 25 29 29 N 1.31629 * 107.91973 * 359.73767 * 22 21 20 30 30 H 0.96998 * 120.00358 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.47230 * 64.95052 * 9 7 2 32 32 H 1.08995 * 109.47194 * 304.94943 * 9 7 2 33 33 H 1.08997 * 109.46914 * 64.59120 * 11 10 9 34 34 H 1.09008 * 109.46574 * 184.58750 * 11 10 9 35 35 H 1.08998 * 110.51402 * 237.28957 * 14 12 11 36 36 H 1.09003 * 110.51196 * 359.86751 * 14 12 11 37 37 H 1.08994 * 110.37490 * 142.81273 * 15 14 12 38 38 H 1.09008 * 110.37091 * 265.14849 * 15 14 12 39 39 H 1.08999 * 110.33400 * 281.58904 * 17 16 15 40 40 H 1.09001 * 110.50857 * 159.18712 * 17 16 15 41 41 H 1.09010 * 109.46960 * 69.01430 * 18 10 9 42 42 H 1.08998 * 109.47428 * 309.01353 * 18 10 9 43 43 H 1.08005 * 126.01041 * 0.02562 * 20 19 18 44 44 H 1.07998 * 126.07633 * 180.02562 * 21 20 19 45 45 H 1.08003 * 120.06463 * 0.02562 * 24 23 22 46 46 H 1.07998 * 119.94197 * 180.27529 * 25 24 23 47 47 H 1.07998 * 119.88130 * 179.72405 * 26 25 24 48 48 H 1.08001 * 119.93897 * 180.02562 * 27 26 25 49 49 H 1.08006 * 120.05940 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5739 -0.1178 11 6 3.7084 -3.3432 1.0988 12 6 4.2952 -2.6203 2.3129 13 1 4.0198 -1.5658 2.2982 14 6 3.8173 -3.2863 3.6226 15 6 5.1211 -3.7710 4.2947 16 8 6.1548 -2.9229 3.7489 17 6 5.8314 -2.7782 2.3465 18 6 5.4380 -2.5981 -0.4230 19 7 5.8457 -3.9678 -0.7455 20 6 5.9362 -4.4965 -1.9848 21 6 6.3439 -5.7785 -1.8624 22 6 6.5105 -6.0495 -0.4902 23 6 6.9491 -7.3395 0.0981 24 6 7.2328 -8.4244 -0.7286 25 6 7.6457 -9.6201 -0.1766 26 6 7.7666 -9.7460 1.1956 27 6 7.4806 -8.6738 2.0215 28 6 7.0733 -7.4716 1.4795 29 7 6.2144 -4.9545 0.1776 30 1 -0.4850 0.8400 -0.0004 31 1 3.8745 -0.7587 0.9321 32 1 3.8752 -0.6055 -0.8412 33 1 2.6290 -3.4369 1.2184 34 1 4.1524 -4.3353 1.0170 35 1 3.3079 -2.5605 4.2565 36 1 3.1611 -4.1291 3.4052 37 1 5.0597 -3.6467 5.3758 38 1 5.3132 -4.8138 4.0421 39 1 6.1336 -3.6681 1.7943 40 1 6.3131 -1.8922 1.9329 41 1 5.9993 -2.2463 0.4427 42 1 5.6395 -1.9488 -1.2750 43 1 5.7212 -3.9843 -2.9110 44 1 6.5122 -6.4725 -2.6726 45 1 7.1345 -8.3286 -1.7999 46 1 7.8702 -10.4604 -0.8168 47 1 8.0857 -10.6848 1.6237 48 1 7.5770 -8.7774 3.0922 49 1 6.8506 -6.6349 2.1252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071890228.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:53 Heat of formation + Delta-G solvation = 90.309548 kcal Electronic energy + Delta-G solvation = -30342.311129 eV Core-core repulsion = 26465.147995 eV Total energy + Delta-G solvation = -3877.163134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.16987 -39.51098 -38.89936 -36.95193 -33.29192 -32.65945 -31.76616 -31.15352 -30.29505 -29.86620 -29.01193 -27.52059 -26.36452 -23.90738 -22.99200 -22.69478 -22.29973 -21.13918 -20.52366 -19.80785 -19.44053 -17.42192 -16.98729 -16.75229 -16.29590 -15.53771 -15.51942 -15.20545 -14.91476 -14.86955 -14.56776 -14.17789 -13.94443 -13.71090 -13.56177 -13.34451 -13.25203 -12.84645 -12.73024 -12.64777 -12.50210 -12.02218 -11.91961 -11.50469 -11.36301 -11.31246 -11.20336 -10.97409 -10.79888 -10.67207 -10.50073 -10.41871 -10.15463 -10.03409 -9.84840 -9.46065 -9.35517 -9.04407 -8.69990 -8.67748 -8.23578 -7.61080 -6.16718 -4.15416 0.92273 1.31266 2.12115 2.61538 2.95258 3.18212 3.25910 3.27593 3.90561 4.18339 4.29721 4.40103 4.50966 4.68889 4.85697 4.89951 4.95363 5.00980 5.06561 5.12483 5.15974 5.20984 5.33376 5.37222 5.41396 5.43069 5.54830 5.68223 5.72237 5.81822 5.83469 5.88360 5.92539 5.97119 6.02149 6.08584 6.15193 6.19389 6.29307 6.32109 6.39118 6.51890 6.59966 6.67835 6.74168 6.84792 6.89417 7.04625 7.09338 7.33844 7.66892 7.71273 7.84049 8.48309 8.91396 9.42916 10.96137 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014193 B = 0.003279 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.279171 B = 8536.523918 C = 9670.549680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.872 3.128 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.081 0.919 9 C 0.162 3.838 10 N -0.534 5.534 11 C 0.073 3.927 12 C -0.161 4.161 13 H 0.096 0.904 14 C -0.142 4.142 15 C 0.049 3.951 16 O -0.384 6.384 17 C 0.028 3.972 18 C 0.270 3.730 19 N -0.349 5.349 20 C 0.077 3.923 21 C -0.269 4.269 22 C 0.102 3.898 23 C -0.004 4.004 24 C -0.098 4.098 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.122 4.122 28 C -0.094 4.094 29 N -0.283 5.283 30 H 0.265 0.735 31 H 0.003 0.997 32 H 0.026 0.974 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.174 0.826 44 H 0.145 0.855 45 H 0.127 0.873 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.123 0.877 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.605 -14.641 0.885 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.699 3.301 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.258 5.258 11 C -0.055 4.055 12 C -0.181 4.181 13 H 0.114 0.886 14 C -0.180 4.180 15 C -0.028 4.028 16 O -0.303 6.303 17 C -0.047 4.047 18 C 0.060 3.940 19 N -0.131 5.131 20 C -0.069 4.069 21 C -0.298 4.298 22 C -0.062 4.062 23 C -0.006 4.006 24 C -0.118 4.118 25 C -0.141 4.141 26 C -0.138 4.138 27 C -0.140 4.140 28 C -0.113 4.113 29 N -0.106 5.106 30 H 0.075 0.925 31 H 0.021 0.979 32 H 0.044 0.956 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.121 0.879 43 H 0.191 0.809 44 H 0.162 0.838 45 H 0.144 0.856 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.141 0.859 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 15.204 -13.865 1.743 20.650 hybrid contribution 0.417 1.071 -0.410 1.220 sum 15.621 -12.793 1.333 20.235 Atomic orbital electron populations 1.69871 1.06119 1.26992 1.50386 1.24864 0.94717 0.98715 0.94733 0.86923 0.80325 0.84223 0.78646 1.20056 1.21044 1.19284 1.20874 0.88072 0.94821 1.50936 0.90123 1.20263 0.97756 0.82870 0.95439 1.62193 1.10321 1.17426 1.35865 1.22214 1.01945 0.96003 0.85350 1.23284 0.95154 1.03102 0.96555 0.88609 1.22853 0.97804 1.00924 0.96424 1.23331 0.86924 0.94196 0.98383 1.89078 1.48607 1.69793 1.22837 1.24349 0.94799 1.02432 0.83165 1.22736 0.91788 0.77194 1.02331 1.48759 1.49755 1.10867 1.03717 1.22479 0.99433 0.94689 0.90328 1.21325 1.15667 0.96831 0.95965 1.20625 1.00634 0.92563 0.92350 1.17872 0.99708 0.90173 0.92885 1.21130 0.98658 0.92166 0.99844 1.21040 1.00459 0.97414 0.95183 1.21206 1.00119 0.98707 0.93793 1.21103 0.99924 0.93061 0.99924 1.21289 0.97913 0.97879 0.94244 1.77195 1.21273 0.96868 1.15299 0.92485 0.97917 0.95636 0.89414 0.90958 0.90896 0.90565 0.89809 0.92695 0.88579 0.90506 0.90602 0.87943 0.80923 0.83760 0.85557 0.85880 0.86173 0.85928 0.85438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.96 55.43 0.77 -25.69 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 20.40 27.37 -169.99 -4.65 15.74 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -5.98 6.69 56.52 0.38 -5.60 16 7 C -0.51 -13.57 9.24 -34.44 -0.32 -13.89 16 8 H 0.08 2.39 7.36 -52.49 -0.39 2.00 16 9 C 0.16 3.56 3.55 -4.97 -0.02 3.55 16 10 N -0.53 -10.26 4.82 -239.98 -1.16 -11.41 16 11 C 0.07 1.36 4.48 -3.82 -0.02 1.34 16 12 C -0.16 -2.79 2.85 -89.06 -0.25 -3.04 16 13 H 0.10 1.88 5.65 -51.93 -0.29 1.59 16 14 C -0.14 -2.16 6.73 -25.16 -0.17 -2.33 16 15 C 0.05 0.68 7.64 37.94 0.29 0.97 16 16 O -0.38 -6.47 11.65 -35.23 -0.41 -6.88 16 17 C 0.03 0.47 5.19 37.93 0.20 0.66 16 18 C 0.27 4.26 5.54 -63.32 -0.35 3.91 16 19 N -0.35 -5.29 3.41 -64.41 -0.22 -5.51 16 20 C 0.08 1.02 11.46 -17.26 -0.20 0.82 16 21 C -0.27 -3.42 10.18 -39.72 -0.40 -3.82 16 22 C 0.10 1.45 6.99 -82.77 -0.58 0.87 16 23 C 0.00 -0.06 5.88 -104.90 -0.62 -0.67 16 24 C -0.10 -1.02 9.58 -39.26 -0.38 -1.40 16 25 C -0.12 -1.10 10.03 -39.63 -0.40 -1.50 16 26 C -0.12 -1.06 10.04 -39.52 -0.40 -1.46 16 27 C -0.12 -1.22 10.03 -39.63 -0.40 -1.62 16 28 C -0.09 -1.14 9.69 -39.26 -0.38 -1.52 16 29 N -0.28 -4.42 8.12 33.43 0.27 -4.15 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.00 0.08 4.94 -51.93 -0.26 -0.18 16 32 H 0.03 0.55 7.04 -51.93 -0.37 0.19 16 33 H 0.09 1.84 7.07 -51.93 -0.37 1.47 16 34 H 0.07 1.33 5.88 -51.92 -0.31 1.02 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.08 1.11 7.73 -51.93 -0.40 0.71 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.10 1.58 4.29 -51.93 -0.22 1.36 16 40 H 0.08 1.23 6.62 -51.93 -0.34 0.89 16 41 H 0.08 1.18 3.76 -51.92 -0.20 0.99 16 42 H 0.10 1.42 7.90 -51.93 -0.41 1.01 16 43 H 0.17 1.79 8.06 -52.48 -0.42 1.37 16 44 H 0.14 1.45 7.34 -52.49 -0.39 1.06 16 45 H 0.13 1.10 7.04 -52.48 -0.37 0.73 16 46 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 48 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 49 H 0.13 1.63 7.85 -52.48 -0.41 1.22 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -30.97 380.25 -10.98 -41.95 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.83 Total: 7.46 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -4.48 Total: -17.24 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.33 Total: -46.77 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.41 Total: -6.88 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.65 Total: 15.74 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.97 -10.98 -41.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071890228.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.264 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds