Wall clock time and date at job start Tue Mar 31 2020 06:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86799 * 120.00342 * 2 1 4 4 H 1.48493 * 109.47302 * 239.99766 * 3 2 1 5 5 H 1.48496 * 109.47252 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47136 * 119.99973 * 3 2 1 7 7 C 1.39941 * 119.99500 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99821 * 197.88056 * 7 2 1 9 9 C 1.41433 * 120.00406 * 17.88181 * 7 2 1 10 10 C 1.40779 * 120.18135 * 204.44146 * 9 7 2 11 11 C 1.37716 * 120.04247 * 180.02562 * 10 9 7 12 12 C 1.38367 * 120.40934 * 359.69848 * 11 10 9 13 13 C 1.39884 * 120.35899 * 0.56274 * 12 11 10 14 14 C 1.47883 * 120.02725 * 179.74224 * 13 12 11 15 15 O 1.21544 * 120.00175 * 179.72078 * 14 13 12 16 16 N 1.34778 * 119.99685 * 359.71896 * 14 13 12 17 17 C 1.46502 * 119.99893 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47174 * 180.02562 * 17 16 14 19 19 S 1.81402 * 109.47133 * 180.02562 * 18 17 16 20 20 O 1.42100 * 109.47011 * 289.05389 * 19 18 17 21 21 C 1.76196 * 103.00086 * 180.02562 * 19 18 17 22 22 C 1.38236 * 120.00291 * 89.99840 * 21 19 18 23 23 C 1.38229 * 120.00106 * 180.02562 * 22 21 19 24 24 C 1.38244 * 120.00229 * 359.95657 * 23 22 21 25 25 C 1.38235 * 119.99527 * 0.27635 * 24 23 22 26 26 C 1.38232 * 120.00053 * 359.51025 * 25 24 23 27 27 C 1.39036 * 119.94744 * 359.46162 * 13 12 11 28 28 H 0.97001 * 119.99520 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.98162 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.79120 * 179.97438 * 11 10 9 31 31 H 1.07998 * 119.82399 * 180.27564 * 12 11 10 32 32 H 0.97000 * 120.00523 * 0.02562 * 16 14 13 33 33 H 1.09003 * 109.47083 * 59.99767 * 17 16 14 34 34 H 1.09007 * 109.47263 * 300.00146 * 17 16 14 35 35 H 1.08998 * 109.46938 * 59.99915 * 18 17 16 36 36 H 1.08999 * 109.46776 * 299.99614 * 18 17 16 37 37 H 1.08002 * 119.99752 * 359.97438 * 22 21 19 38 38 H 1.07999 * 119.99982 * 179.97438 * 23 22 21 39 39 H 1.07991 * 119.99795 * 180.02562 * 24 23 22 40 40 H 1.07998 * 119.99866 * 179.72793 * 25 24 23 41 41 H 1.07999 * 119.99930 * 180.25474 * 26 25 24 42 42 H 1.07997 * 120.19833 * 180.23611 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2775 2.7464 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0488 -1.2345 0.2877 9 6 1.3519 -2.4074 -0.3750 10 6 1.8261 -3.6500 0.0867 11 6 1.1855 -4.8122 -0.2812 12 6 0.0707 -4.7686 -1.0997 13 6 -0.4117 -3.5437 -1.5726 14 6 -1.6003 -3.5061 -2.4516 15 8 -2.0221 -2.4411 -2.8582 16 7 -2.2159 -4.6528 -2.8019 17 6 -3.3931 -4.6156 -3.6732 18 6 -3.8949 -6.0408 -3.9136 19 16 -5.3521 -5.9948 -4.9930 20 8 -6.4545 -5.4542 -4.2777 21 6 -5.7806 -7.6964 -5.1533 22 6 -6.6575 -8.2759 -4.2554 23 6 -6.9932 -9.6109 -4.3808 24 6 -6.4527 -10.3664 -5.4047 25 6 -5.5720 -9.7881 -6.2996 26 6 -5.2398 -8.4519 -6.1768 27 6 0.2238 -2.3612 -1.2109 28 1 -0.4849 0.8401 0.0004 29 1 2.6927 -3.6918 0.7298 30 1 1.5529 -5.7633 0.0750 31 1 -0.4270 -5.6856 -1.3787 32 1 -1.8796 -5.5027 -2.4772 33 1 -3.1257 -4.1585 -4.6259 34 1 -4.1793 -4.0295 -3.1970 35 1 -4.1624 -6.4974 -2.9607 36 1 -3.1090 -6.6272 -4.3897 37 1 -7.0796 -7.6858 -3.4555 38 1 -7.6779 -10.0638 -3.6791 39 1 -6.7153 -11.4093 -5.5029 40 1 -5.1464 -10.3793 -7.0969 41 1 -4.5549 -7.9991 -6.8785 42 1 -0.1475 -1.4130 -1.5706 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071896465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:29 Heat of formation + Delta-G solvation = -32.292066 kcal Electronic energy + Delta-G solvation = -25224.053942 eV Core-core repulsion = 21453.056855 eV Total energy + Delta-G solvation = -3770.997087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 343.103 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.33368 -39.20432 -37.06500 -36.01468 -34.92120 -33.73708 -31.49363 -31.33085 -31.06723 -29.56897 -29.34853 -25.35754 -23.98655 -23.08340 -23.02210 -21.86351 -20.91170 -19.63629 -18.49037 -17.75151 -17.26133 -16.34319 -16.02033 -15.77904 -15.50383 -15.28738 -15.05381 -14.72190 -14.64033 -14.44847 -13.92041 -13.76949 -13.66625 -13.21835 -13.12292 -12.69812 -12.59242 -12.49866 -12.18994 -12.04474 -11.69088 -11.58807 -11.49684 -11.14958 -11.07581 -10.75667 -10.54128 -10.50490 -10.04184 -9.70725 -9.63330 -9.36809 -9.21408 -9.08782 -8.70987 -8.63810 -7.64243 -7.53149 -6.80436 -4.42015 0.49064 0.96410 1.49081 2.19948 2.37875 2.81653 3.07608 3.09388 3.16420 3.26976 3.57031 3.81914 3.85908 3.91969 4.45179 4.55624 4.61614 4.63136 4.64372 4.78277 4.98390 5.11468 5.37054 5.37318 5.57681 5.59043 5.61862 5.73602 5.87114 5.91725 5.93015 6.03091 6.07951 6.25970 6.51237 6.70751 6.80071 6.97911 7.00919 7.20618 7.37075 7.69003 7.74518 7.91560 8.07440 8.18019 8.49629 8.79338 8.82673 8.92852 10.14215 Molecular weight = 343.10amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.001955 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.063537 B =14318.665343 C =15114.519875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.212 4.212 11 C -0.098 4.098 12 C -0.220 4.220 13 C -0.128 4.128 14 C 0.563 3.437 15 O -0.544 6.544 16 N -0.734 5.734 17 C 0.142 3.858 18 C -0.473 4.473 19 S 1.345 4.655 20 O -0.845 6.845 21 C -0.462 4.462 22 C -0.053 4.053 23 C -0.137 4.137 24 C -0.086 4.086 25 C -0.139 4.139 26 C -0.043 4.043 27 C -0.093 4.093 28 H 0.286 0.714 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.400 0.600 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.138 0.862 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.336 -17.356 -14.004 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.232 4.232 11 C -0.116 4.116 12 C -0.240 4.240 13 C -0.131 4.131 14 C 0.354 3.646 15 O -0.422 6.422 16 N -0.390 5.390 17 C 0.017 3.983 18 C -0.608 4.608 19 S 1.541 4.459 20 O -0.841 6.841 21 C -0.559 4.559 22 C -0.072 4.072 23 C -0.156 4.156 24 C -0.104 4.104 25 C -0.158 4.158 26 C -0.062 4.062 27 C -0.113 4.113 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.236 0.764 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.156 0.844 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.337 -15.621 -14.664 23.789 hybrid contribution -0.044 -1.105 2.342 2.590 sum -10.381 -16.727 -12.322 23.225 Atomic orbital electron populations 1.69784 1.07597 1.29954 1.33301 1.25982 0.94781 1.01598 0.92317 0.86308 0.80092 0.80047 0.79975 1.18679 1.20215 1.18981 1.19561 0.98222 0.91047 1.40002 0.90080 1.17601 0.91194 0.92467 0.89148 1.21094 1.03559 0.92746 1.05804 1.20430 0.96008 0.96731 0.98427 1.20325 1.01313 0.94596 1.07739 1.19460 0.96509 0.95341 1.01776 1.18881 0.83315 0.82789 0.79657 1.90699 1.66261 1.29839 1.55443 1.45972 1.30722 1.09892 1.52380 1.20703 0.88922 0.93003 0.95669 1.28128 1.16583 1.02723 1.13394 1.69829 0.86372 0.80768 1.08926 1.93123 1.46234 1.70454 1.74273 1.27818 1.06681 1.19030 1.02337 1.21197 0.94091 0.94887 0.97016 1.21294 1.00907 0.94444 0.98974 1.21381 0.95260 0.99835 0.93948 1.21311 0.98994 0.95538 0.99926 1.20913 0.96424 0.93528 0.95371 1.21648 0.96470 0.96459 0.96696 0.90319 0.88613 0.88937 0.89332 0.76432 0.90601 0.91507 0.88719 0.85887 0.85481 0.85801 0.85739 0.85336 0.84393 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.86 10.96 55.55 0.61 -20.25 16 2 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.07 9.05 -37.73 -0.34 -12.41 16 8 H 0.08 2.01 7.91 -52.48 -0.41 1.59 16 9 C 0.10 2.61 5.57 -106.87 -0.60 2.01 16 10 C -0.21 -5.04 9.78 -38.81 -0.38 -5.42 16 11 C -0.10 -2.08 10.01 -39.72 -0.40 -2.48 16 12 C -0.22 -4.62 9.55 -38.92 -0.37 -4.99 16 13 C -0.13 -3.02 5.87 -105.04 -0.62 -3.64 16 14 C 0.56 12.39 7.77 -12.31 -0.10 12.29 16 15 O -0.54 -13.72 16.33 5.33 0.09 -13.63 16 16 N -0.73 -12.11 5.51 -61.23 -0.34 -12.45 16 17 C 0.14 1.92 5.68 -4.04 -0.02 1.89 16 18 C -0.47 -4.40 6.00 37.16 0.22 -4.17 16 19 S 1.34 11.19 13.55 -107.50 -1.46 9.73 16 20 O -0.85 -12.52 16.90 -35.23 -0.60 -13.11 16 21 C -0.46 -3.94 5.61 -39.58 -0.22 -4.16 16 22 C -0.05 -0.54 9.44 -39.59 -0.37 -0.91 16 23 C -0.14 -1.15 10.05 -39.58 -0.40 -1.55 16 24 C -0.09 -0.59 10.05 -39.58 -0.40 -0.99 16 25 C -0.14 -0.85 10.05 -39.58 -0.40 -1.25 16 26 C -0.04 -0.26 9.75 -39.58 -0.39 -0.65 16 27 C -0.09 -2.48 8.24 -38.44 -0.32 -2.80 16 28 H 0.29 7.02 8.30 -40.82 -0.34 6.69 16 29 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 30 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.09 1.53 6.38 -52.49 -0.33 1.20 16 32 H 0.40 5.67 6.49 -40.82 -0.26 5.40 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.12 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.13 1.46 7.45 -52.49 -0.39 1.07 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 41 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 42 H 0.13 3.88 5.74 -52.49 -0.30 3.58 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -36.53 374.94 -11.32 -47.85 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.07 Total: 9.92 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -5.18 Total: -27.47 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.27 Total: -32.70 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.51 Total: -26.74 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Atomic # 16 Polarization: 11.19 SS G_CDS: -1.46 Total: 9.73 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.53 -11.32 -47.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071896465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.555 kcal (2) G-P(sol) polarization free energy of solvation -36.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds