Wall clock time and date at job start Tue Mar 31 2020 06:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86799 * 120.00342 * 2 1 4 4 H 1.48493 * 109.47302 * 239.99766 * 3 2 1 5 5 H 1.48496 * 109.47252 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47136 * 119.99973 * 3 2 1 7 7 C 1.39941 * 119.99500 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99821 * 197.88056 * 7 2 1 9 9 C 1.41433 * 120.00406 * 17.88181 * 7 2 1 10 10 C 1.40779 * 120.18135 * 204.44146 * 9 7 2 11 11 C 1.37716 * 120.04247 * 180.02562 * 10 9 7 12 12 C 1.38367 * 120.40934 * 359.69848 * 11 10 9 13 13 C 1.39884 * 120.35899 * 0.56274 * 12 11 10 14 14 C 1.47883 * 120.02725 * 179.74224 * 13 12 11 15 15 O 1.21544 * 120.00175 * 179.72078 * 14 13 12 16 16 N 1.34778 * 119.99685 * 359.71896 * 14 13 12 17 17 C 1.46502 * 119.99893 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47174 * 180.02562 * 17 16 14 19 19 S 1.81402 * 109.47133 * 180.02562 * 18 17 16 20 20 O 1.42100 * 109.47011 * 289.05389 * 19 18 17 21 21 C 1.76196 * 103.00086 * 180.02562 * 19 18 17 22 22 C 1.38236 * 120.00291 * 89.99840 * 21 19 18 23 23 C 1.38229 * 120.00106 * 180.02562 * 22 21 19 24 24 C 1.38244 * 120.00229 * 359.95657 * 23 22 21 25 25 C 1.38235 * 119.99527 * 0.27635 * 24 23 22 26 26 C 1.38232 * 120.00053 * 359.51025 * 25 24 23 27 27 C 1.39036 * 119.94744 * 359.46162 * 13 12 11 28 28 H 0.97001 * 119.99520 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.98162 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.79120 * 179.97438 * 11 10 9 31 31 H 1.07998 * 119.82399 * 180.27564 * 12 11 10 32 32 H 0.97000 * 120.00523 * 0.02562 * 16 14 13 33 33 H 1.09003 * 109.47083 * 59.99767 * 17 16 14 34 34 H 1.09007 * 109.47263 * 300.00146 * 17 16 14 35 35 H 1.08998 * 109.46938 * 59.99915 * 18 17 16 36 36 H 1.08999 * 109.46776 * 299.99614 * 18 17 16 37 37 H 1.08002 * 119.99752 * 359.97438 * 22 21 19 38 38 H 1.07999 * 119.99982 * 179.97438 * 23 22 21 39 39 H 1.07991 * 119.99795 * 180.02562 * 24 23 22 40 40 H 1.07998 * 119.99866 * 179.72793 * 25 24 23 41 41 H 1.07999 * 119.99930 * 180.25474 * 26 25 24 42 42 H 1.07997 * 120.19833 * 180.23611 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2775 2.7464 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0488 -1.2345 0.2877 9 6 1.3519 -2.4074 -0.3750 10 6 1.8261 -3.6500 0.0867 11 6 1.1855 -4.8122 -0.2812 12 6 0.0707 -4.7686 -1.0997 13 6 -0.4117 -3.5437 -1.5726 14 6 -1.6003 -3.5061 -2.4516 15 8 -2.0221 -2.4411 -2.8582 16 7 -2.2159 -4.6528 -2.8019 17 6 -3.3931 -4.6156 -3.6732 18 6 -3.8949 -6.0408 -3.9136 19 16 -5.3521 -5.9948 -4.9930 20 8 -6.4545 -5.4542 -4.2777 21 6 -5.7806 -7.6964 -5.1533 22 6 -6.6575 -8.2759 -4.2554 23 6 -6.9932 -9.6109 -4.3808 24 6 -6.4527 -10.3664 -5.4047 25 6 -5.5720 -9.7881 -6.2996 26 6 -5.2398 -8.4519 -6.1768 27 6 0.2238 -2.3612 -1.2109 28 1 -0.4849 0.8401 0.0004 29 1 2.6927 -3.6918 0.7298 30 1 1.5529 -5.7633 0.0750 31 1 -0.4270 -5.6856 -1.3787 32 1 -1.8796 -5.5027 -2.4772 33 1 -3.1257 -4.1585 -4.6259 34 1 -4.1793 -4.0295 -3.1970 35 1 -4.1624 -6.4974 -2.9607 36 1 -3.1090 -6.6272 -4.3897 37 1 -7.0796 -7.6858 -3.4555 38 1 -7.6779 -10.0638 -3.6791 39 1 -6.7153 -11.4093 -5.5029 40 1 -5.1464 -10.3793 -7.0969 41 1 -4.5549 -7.9991 -6.8785 42 1 -0.1475 -1.4130 -1.5706 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071896465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:28 Heat of formation + Delta-G solvation = -57.256861 kcal Electronic energy + Delta-G solvation = -25225.136497 eV Core-core repulsion = 21453.056855 eV Total energy + Delta-G solvation = -3772.079641 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 343.103 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.90332 -39.87118 -38.85725 -36.99667 -36.37019 -35.58460 -32.64415 -32.03288 -31.86979 -31.32800 -30.90696 -27.23006 -25.24471 -23.90756 -23.56921 -23.22812 -22.71156 -21.31003 -19.59746 -19.07094 -18.05097 -17.93085 -17.28032 -16.83221 -16.77243 -16.45384 -16.26498 -16.05316 -15.73214 -15.40741 -15.18547 -15.06174 -14.96726 -14.39485 -14.35394 -14.27101 -13.76873 -13.64243 -13.46202 -13.13084 -12.96247 -12.82419 -12.78152 -12.52759 -12.42190 -12.20202 -12.08710 -11.92073 -11.52347 -11.40430 -11.06864 -10.79598 -10.23142 -10.19678 -9.91779 -9.48531 -9.44720 -9.39318 -8.67017 -6.38684 -0.11809 0.36784 0.41326 0.79523 1.00806 1.36393 1.48113 1.51161 1.70343 2.08216 2.19235 2.34274 2.67314 2.78176 2.91834 3.65447 3.69188 3.89984 3.94328 4.06273 4.07861 4.19797 4.40266 4.44592 4.50794 4.57290 4.58673 4.72072 4.84348 4.86107 4.95892 5.06647 5.08299 5.18786 5.30537 5.31181 5.39649 5.40546 5.51024 5.51345 5.85809 5.91640 6.00725 6.04888 6.28035 6.49838 6.67080 6.87197 6.94238 7.28216 8.29526 Molecular weight = 343.10amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.001955 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.063537 B =14318.665343 C =15114.519875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.028 3.972 3 Si 0.984 3.016 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.252 1.252 7 C -0.497 4.497 8 H 0.085 0.915 9 C 0.066 3.934 10 C -0.217 4.217 11 C -0.096 4.096 12 C -0.199 4.199 13 C -0.139 4.139 14 C 0.558 3.442 15 O -0.588 6.588 16 N -0.710 5.710 17 C 0.133 3.867 18 C -0.465 4.465 19 S 1.407 4.593 20 O -0.917 6.917 21 C -0.474 4.474 22 C -0.087 4.087 23 C -0.153 4.153 24 C -0.088 4.088 25 C -0.139 4.139 26 C -0.037 4.037 27 C -0.132 4.132 28 H 0.286 0.714 29 H 0.109 0.891 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.415 0.585 33 H 0.097 0.903 34 H 0.037 0.963 35 H 0.083 0.917 36 H 0.166 0.834 37 H 0.097 0.903 38 H 0.129 0.871 39 H 0.149 0.851 40 H 0.162 0.838 41 H 0.183 0.817 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.966 -20.985 -15.913 27.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.805 3.195 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.526 4.526 8 H 0.103 0.897 9 C 0.064 3.936 10 C -0.237 4.237 11 C -0.114 4.114 12 C -0.218 4.218 13 C -0.142 4.142 14 C 0.348 3.652 15 O -0.469 6.469 16 N -0.365 5.365 17 C 0.008 3.992 18 C -0.600 4.600 19 S 1.605 4.395 20 O -0.913 6.913 21 C -0.572 4.572 22 C -0.107 4.107 23 C -0.172 4.172 24 C -0.106 4.106 25 C -0.157 4.157 26 C -0.056 4.056 27 C -0.153 4.153 28 H 0.097 0.903 29 H 0.127 0.873 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.253 0.747 33 H 0.115 0.885 34 H 0.055 0.945 35 H 0.102 0.898 36 H 0.184 0.816 37 H 0.115 0.885 38 H 0.147 0.853 39 H 0.166 0.834 40 H 0.180 0.820 41 H 0.201 0.799 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.971 -19.306 -16.564 26.974 hybrid contribution -0.534 -0.321 2.858 2.926 sum -9.505 -19.627 -13.706 25.757 Atomic orbital electron populations 1.69895 1.09336 1.30699 1.35267 1.26900 0.95402 1.05108 0.91307 0.85216 0.78657 0.75299 0.80364 1.18245 1.19820 1.17628 1.19848 0.98643 0.92164 1.41920 0.89654 1.17960 0.91802 0.93991 0.89880 1.21413 1.03965 0.92750 1.05535 1.20929 0.95336 0.97736 0.97379 1.20853 1.00499 0.95101 1.05364 1.19778 0.96951 0.95588 1.01928 1.18784 0.83262 0.83612 0.79563 1.90675 1.67381 1.31786 1.57099 1.45781 1.30488 1.08758 1.51454 1.20936 0.86937 0.95715 0.95575 1.28110 1.18080 1.00216 1.13634 1.68984 0.84096 0.79929 1.06474 1.93003 1.49555 1.73181 1.75522 1.27677 1.07462 1.18657 1.03438 1.21171 0.96021 0.95841 0.97628 1.21459 1.01626 0.93986 1.00155 1.21757 0.94785 1.00918 0.93169 1.21800 0.98042 0.95813 1.00093 1.21475 0.95935 0.93540 0.94609 1.21463 0.98332 0.96460 0.99042 0.90316 0.87299 0.84309 0.84540 0.74709 0.88484 0.94472 0.89800 0.81637 0.88467 0.85288 0.83366 0.82037 0.79930 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.90 10.96 21.83 0.24 -46.66 16 2 C 0.03 1.46 5.14 85.26 0.44 1.90 16 3 Si 0.98 39.93 29.60 68.60 2.03 41.96 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.50 -27.18 9.05 23.47 0.21 -26.96 16 8 H 0.09 4.37 7.91 -2.91 -0.02 4.35 16 9 C 0.07 3.61 5.57 -21.32 -0.12 3.49 16 10 C -0.22 -10.13 9.78 22.77 0.22 -9.91 16 11 C -0.10 -3.77 10.01 22.18 0.22 -3.55 16 12 C -0.20 -7.74 9.55 22.70 0.22 -7.53 16 13 C -0.14 -6.62 5.87 -20.13 -0.12 -6.73 16 14 C 0.56 24.71 7.77 86.80 0.67 25.39 16 15 O -0.59 -30.90 16.33 -3.85 -0.06 -30.97 16 16 N -0.71 -22.20 5.51 -465.92 -2.57 -24.76 16 17 C 0.13 3.43 5.68 86.38 0.49 3.92 16 18 C -0.47 -7.54 6.00 71.98 0.43 -7.11 16 19 S 1.41 21.88 13.55 -56.49 -0.77 21.12 16 20 O -0.92 -28.36 16.90 -148.98 -2.52 -30.87 16 21 C -0.47 -7.25 5.61 22.27 0.12 -7.12 16 22 C -0.09 -1.80 9.44 22.27 0.21 -1.59 16 23 C -0.15 -2.47 10.05 22.27 0.22 -2.25 16 24 C -0.09 -0.96 10.05 22.27 0.22 -0.73 16 25 C -0.14 -1.09 10.05 22.27 0.22 -0.87 16 26 C -0.04 -0.30 9.75 22.27 0.22 -0.08 16 27 C -0.13 -7.42 8.24 23.01 0.19 -7.23 16 28 H 0.29 15.05 8.30 -92.71 -0.77 14.28 16 29 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 30 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 31 H 0.14 3.96 6.38 -2.91 -0.02 3.94 16 32 H 0.41 10.23 6.49 -92.71 -0.60 9.62 16 33 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.17 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 2.49 7.45 -2.91 -0.02 2.47 16 38 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 39 H 0.15 0.83 8.06 -2.92 -0.02 0.81 16 40 H 0.16 0.23 8.06 -2.91 -0.02 0.21 16 41 H 0.18 -0.25 8.06 -2.91 -0.02 -0.28 16 42 H 0.10 6.19 5.74 -2.91 -0.02 6.17 16 Total: -1.00 -88.15 374.94 0.90 -87.25 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.45 Total: 29.91 kcal Atomic # 6 Polarization: -51.05 SS G_CDS: 4.09 Total: -46.97 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -2.33 Total: -71.43 kcal Atomic # 8 Polarization: -59.26 SS G_CDS: -2.58 Total: -61.84 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Atomic # 16 Polarization: 21.88 SS G_CDS: -0.77 Total: 21.12 kcal Total: -88.15 0.90 -87.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071896465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.998 kcal (2) G-P(sol) polarization free energy of solvation -88.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds