Wall clock time and date at job start Tue Mar 31 2020 06:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 119.99968 * 2 1 4 4 H 1.48510 * 109.47006 * 275.41461 * 3 2 1 5 5 H 1.48503 * 109.47050 * 35.41282 * 3 2 1 6 6 H 1.48493 * 109.47213 * 155.41486 * 3 2 1 7 7 C 1.39938 * 120.00424 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99617 * 341.73338 * 7 2 1 9 9 C 1.41432 * 120.00240 * 161.73301 * 7 2 1 10 10 C 1.40781 * 120.17736 * 330.17540 * 9 7 2 11 11 C 1.37713 * 120.03756 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41493 * 359.70102 * 11 10 9 13 13 C 1.39882 * 120.35703 * 0.55431 * 12 11 10 14 14 C 1.47877 * 120.02610 * 179.74622 * 13 12 11 15 15 O 1.21551 * 120.00255 * 179.73146 * 14 13 12 16 16 N 1.34783 * 120.00027 * 359.72188 * 14 13 12 17 17 C 1.46499 * 119.99767 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.46957 * 180.02562 * 17 16 14 19 19 S 1.81401 * 109.47076 * 180.02562 * 18 17 16 20 20 O 1.42090 * 109.47376 * 70.94613 * 19 18 17 21 21 C 1.76197 * 102.99921 * 180.02562 * 19 18 17 22 22 C 1.38240 * 120.00597 * 89.99861 * 21 19 18 23 23 C 1.38228 * 120.00168 * 179.97438 * 22 21 19 24 24 C 1.38235 * 120.00392 * 359.97438 * 23 22 21 25 25 C 1.38230 * 119.99650 * 0.27874 * 24 23 22 26 26 C 1.38239 * 120.00482 * 359.53255 * 25 24 23 27 27 C 1.39031 * 119.94400 * 359.47081 * 13 12 11 28 28 H 0.96998 * 120.00298 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.98526 * 0.02562 * 10 9 7 30 30 H 1.08005 * 119.79006 * 179.97438 * 11 10 9 31 31 H 1.07997 * 119.82304 * 180.28399 * 12 11 10 32 32 H 0.96998 * 120.00170 * 0.02562 * 16 14 13 33 33 H 1.09004 * 109.46785 * 60.00709 * 17 16 14 34 34 H 1.08995 * 109.47614 * 300.00435 * 17 16 14 35 35 H 1.09004 * 109.46907 * 60.00646 * 18 17 16 36 36 H 1.08995 * 109.47201 * 300.00550 * 18 17 16 37 37 H 1.08005 * 119.99300 * 359.97438 * 22 21 19 38 38 H 1.08004 * 120.00001 * 179.97438 * 23 22 21 39 39 H 1.07996 * 119.99906 * 179.97438 * 24 23 22 40 40 H 1.08002 * 120.00005 * 179.72951 * 25 24 23 41 41 H 1.07992 * 120.00777 * 180.23594 * 26 25 24 42 42 H 1.08010 * 120.19793 * 180.22883 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3753 2.1125 -1.3939 5 1 1.5015 2.6170 0.8113 6 1 3.5922 1.4099 0.5825 7 6 2.0080 -1.2118 -0.0005 8 1 1.5088 -2.1238 0.2922 9 6 3.3689 -1.2425 -0.3845 10 6 3.8624 -0.3098 -1.3164 11 6 5.1879 -0.3426 -1.6886 12 6 6.0444 -1.2850 -1.1473 13 6 5.5708 -2.2230 -0.2240 14 6 6.4914 -3.2304 0.3457 15 8 6.0805 -4.0423 1.1517 16 7 7.7860 -3.2486 -0.0289 17 6 8.6980 -4.2463 0.5359 18 6 10.0970 -4.0485 -0.0510 19 16 11.2262 -5.2843 0.6478 20 8 10.9090 -6.5661 0.1230 21 6 12.7603 -4.9049 -0.1313 22 6 13.6304 -4.0058 0.4564 23 6 14.8342 -3.7086 -0.1546 24 6 15.1683 -4.3109 -1.3532 25 6 14.2959 -5.2060 -1.9436 26 6 13.0938 -5.5062 -1.3307 27 6 4.2353 -2.2038 0.1620 28 1 -0.4850 0.8400 -0.0004 29 1 3.2012 0.4318 -1.7397 30 1 5.5622 0.3745 -2.4042 31 1 7.0831 -1.2991 -1.4425 32 1 8.1139 -2.6006 -0.6719 33 1 8.3391 -5.2461 0.2915 34 1 8.7388 -4.1295 1.6188 35 1 10.4556 -3.0486 0.1937 36 1 10.0565 -4.1650 -1.1340 37 1 13.3696 -3.5355 1.3931 38 1 15.5138 -3.0058 0.3044 39 1 16.1086 -4.0783 -1.8307 40 1 14.5550 -5.6732 -2.8822 41 1 12.4139 -6.2084 -1.7900 42 1 3.8661 -2.9239 0.8775 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071896466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:33 Heat of formation + Delta-G solvation = -31.029020 kcal Electronic energy + Delta-G solvation = -25099.151996 eV Core-core repulsion = 21328.209679 eV Total energy + Delta-G solvation = -3770.942317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 343.103 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.46155 -39.38733 -37.37845 -36.09744 -35.11994 -33.71545 -31.56144 -31.38464 -31.34871 -30.21865 -29.68002 -25.32429 -24.14498 -23.22465 -23.07748 -22.22399 -20.69314 -20.11633 -18.59058 -17.92170 -17.34841 -16.42949 -16.27282 -15.89782 -15.66715 -15.40997 -15.38160 -14.85551 -14.69600 -14.54730 -14.05115 -13.85555 -13.70822 -13.62159 -13.19307 -12.79284 -12.76187 -12.71822 -12.32150 -12.14191 -12.04829 -11.71815 -11.61099 -11.55124 -11.06673 -10.80554 -10.62915 -10.55838 -10.03338 -9.74708 -9.69026 -9.47227 -9.42075 -9.18870 -8.90620 -8.73006 -7.89357 -7.78300 -7.02254 -4.57108 0.42995 0.91126 1.41329 1.88832 2.30012 2.49355 3.03750 3.15838 3.21026 3.24005 3.46613 3.59336 3.65117 3.91404 4.39827 4.46196 4.49404 4.51503 4.59228 4.67971 4.93157 5.05825 5.25891 5.29779 5.31950 5.39351 5.52398 5.60174 5.75185 5.81258 5.85650 5.86545 5.98116 5.99668 6.36532 6.45909 6.58691 6.64223 6.67876 6.95570 7.18748 7.38175 7.47228 7.72523 7.76492 7.98206 8.26413 8.51108 8.65223 8.70255 9.99805 Molecular weight = 343.10amu Principal moments of inertia in cm(-1) A = 0.023942 B = 0.001896 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.230709 B =14762.334015 C =15415.841875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.083 3.917 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.442 4.442 8 H 0.094 0.906 9 C 0.081 3.919 10 C -0.222 4.222 11 C -0.083 4.083 12 C -0.218 4.218 13 C -0.108 4.108 14 C 0.563 3.437 15 O -0.546 6.546 16 N -0.732 5.732 17 C 0.142 3.858 18 C -0.474 4.474 19 S 1.346 4.654 20 O -0.845 6.845 21 C -0.463 4.463 22 C -0.043 4.043 23 C -0.138 4.138 24 C -0.085 4.085 25 C -0.137 4.137 26 C -0.053 4.053 27 C -0.135 4.135 28 H 0.287 0.713 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.401 0.599 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.705 -2.361 1.015 28.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.137 4.137 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.167 1.167 7 C -0.470 4.470 8 H 0.112 0.888 9 C 0.078 3.922 10 C -0.241 4.241 11 C -0.101 4.101 12 C -0.238 4.238 13 C -0.111 4.111 14 C 0.353 3.647 15 O -0.424 6.424 16 N -0.386 5.386 17 C 0.017 3.983 18 C -0.610 4.610 19 S 1.542 4.458 20 O -0.841 6.841 21 C -0.559 4.559 22 C -0.062 4.062 23 C -0.157 4.157 24 C -0.104 4.104 25 C -0.156 4.156 26 C -0.072 4.072 27 C -0.156 4.156 28 H 0.097 0.903 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.237 0.763 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.142 0.858 36 H 0.113 0.887 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 27.918 -3.605 2.262 28.240 hybrid contribution 0.507 1.108 -2.928 3.171 sum 28.424 -2.497 -0.666 28.542 Atomic orbital electron populations 1.69687 1.08101 1.30415 1.34396 1.26178 0.94768 1.01784 0.90943 0.86302 0.81381 0.79700 0.78847 1.19582 1.21630 1.16665 1.19526 0.92908 0.96338 1.38193 0.88806 1.17704 0.93167 0.91078 0.90213 1.21176 0.95684 1.04296 1.02950 1.20508 0.93758 0.97371 0.98507 1.20373 0.97932 1.00774 1.04689 1.19411 0.94268 0.96947 1.00507 1.18818 0.81348 0.83980 0.80570 1.90706 1.76704 1.40600 1.34403 1.45961 1.09460 1.35592 1.47627 1.20734 0.85892 0.93383 0.98338 1.28143 1.07475 1.15671 1.09694 1.69851 0.81750 0.83240 1.10935 1.93121 1.81317 1.31263 1.78381 1.27795 1.16784 1.06402 1.04959 1.20913 0.92829 0.93808 0.98669 1.21317 0.97484 1.00754 0.96189 1.21387 0.98892 0.94942 0.95137 1.21297 0.94732 0.99064 1.00511 1.21196 0.96539 0.96049 0.93411 1.21284 0.91046 1.01912 1.01328 0.90291 0.87874 0.88309 0.88689 0.76265 0.91352 0.90426 0.85828 0.88684 0.84381 0.85306 0.85706 0.85775 0.85484 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.04 13.93 55.55 0.77 -20.27 16 2 C 0.08 2.13 5.40 -17.35 -0.09 2.04 16 3 Si 0.91 20.17 24.52 -169.99 -4.17 16.01 16 4 H -0.27 -5.74 6.71 56.52 0.38 -5.36 16 5 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.24 -5.50 6.86 56.52 0.39 -5.11 16 7 C -0.44 -11.84 9.57 -37.73 -0.36 -12.20 16 8 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 9 C 0.08 2.05 5.10 -106.87 -0.55 1.50 16 10 C -0.22 -5.14 7.17 -38.81 -0.28 -5.42 16 11 C -0.08 -1.69 10.01 -39.72 -0.40 -2.08 16 12 C -0.22 -4.18 9.55 -38.92 -0.37 -4.55 16 13 C -0.11 -2.30 5.87 -105.04 -0.62 -2.92 16 14 C 0.56 11.02 7.77 -12.31 -0.10 10.92 16 15 O -0.55 -12.29 16.33 5.32 0.09 -12.20 16 16 N -0.73 -10.67 5.51 -61.24 -0.34 -11.00 16 17 C 0.14 1.68 5.68 -4.04 -0.02 1.66 16 18 C -0.47 -3.83 6.00 37.16 0.22 -3.61 16 19 S 1.35 9.92 13.55 -107.50 -1.46 8.46 16 20 O -0.85 -11.70 16.90 -35.23 -0.60 -12.30 16 21 C -0.46 -3.60 5.61 -39.58 -0.22 -3.82 16 22 C -0.04 -0.24 9.75 -39.58 -0.39 -0.62 16 23 C -0.14 -0.78 10.05 -39.59 -0.40 -1.17 16 24 C -0.09 -0.54 10.05 -39.59 -0.40 -0.94 16 25 C -0.14 -1.07 10.05 -39.58 -0.40 -1.47 16 26 C -0.05 -0.50 9.44 -39.58 -0.37 -0.88 16 27 C -0.14 -3.26 9.34 -38.44 -0.36 -3.62 16 28 H 0.29 6.77 8.30 -40.82 -0.34 6.43 16 29 H 0.10 2.37 4.72 -52.49 -0.25 2.12 16 30 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 31 H 0.10 1.46 6.38 -52.49 -0.33 1.12 16 32 H 0.40 4.95 6.49 -40.82 -0.26 4.68 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.12 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.14 0.24 8.06 -52.48 -0.42 -0.19 16 38 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 39 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 41 H 0.13 1.36 7.46 -52.49 -0.39 0.97 16 42 H 0.12 2.84 7.64 -52.48 -0.40 2.44 16 LS Contribution 369.70 15.07 5.57 5.57 Total: -1.00 -35.79 369.70 -10.26 -46.04 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.04 Total: 6.87 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -5.09 Total: -27.18 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.44 Total: -31.27 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.51 Total: -24.50 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.17 Total: 16.01 kcal Atomic # 16 Polarization: 9.92 SS G_CDS: -1.46 Total: 8.46 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.79 -10.26 -46.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071896466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.015 kcal (2) G-P(sol) polarization free energy of solvation -35.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds