Wall clock time and date at job start Tue Mar 31 2020 05:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48496 * 109.47008 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46999 * 300.00242 * 3 2 1 6 6 H 1.48496 * 109.47159 * 60.00167 * 3 2 1 7 7 C 1.39890 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99582 * 197.93075 * 7 2 1 9 9 C 1.41216 * 120.00158 * 17.93409 * 7 2 1 10 10 C 1.40832 * 120.17770 * 204.54001 * 9 7 2 11 11 C 1.36438 * 119.81374 * 180.02562 * 10 9 7 12 12 C 1.39313 * 120.17908 * 359.97438 * 11 10 9 13 13 O 1.35675 * 119.81379 * 179.97438 * 12 11 10 14 14 C 1.42902 * 117.00011 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46992 * 179.97438 * 14 13 12 16 16 S 1.81397 * 109.46870 * 179.97438 * 15 14 13 17 17 C 1.76207 * 103.00038 * 180.02562 * 16 15 14 18 18 N 1.33123 * 125.28667 * 0.02562 * 17 16 15 19 19 C 1.32881 * 109.71354 * 179.97438 * 18 17 16 20 20 N 1.33794 * 132.36039 * 180.02562 * 19 18 17 21 21 C 1.31419 * 120.87326 * 179.97438 * 20 19 18 22 22 C 1.39941 * 120.28802 * 359.97438 * 21 20 19 23 23 C 1.35876 * 119.23242 * 0.02562 * 22 21 20 24 24 N 1.35842 * 119.04182 * 359.97438 * 23 22 21 25 25 N 1.31801 * 125.28884 * 179.72315 * 17 16 15 26 26 C 1.39311 * 120.36844 * 0.25461 * 12 11 10 27 27 C 1.36437 * 120.18553 * 359.48433 * 26 12 11 28 28 H 0.97005 * 120.00310 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.09178 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.91105 * 179.97438 * 11 10 9 31 31 H 1.08993 * 109.47384 * 59.99891 * 14 13 12 32 32 H 1.09002 * 109.46957 * 299.99669 * 14 13 12 33 33 H 1.09005 * 109.47335 * 60.00062 * 15 14 13 34 34 H 1.09002 * 109.47144 * 299.99731 * 15 14 13 35 35 H 1.08003 * 119.85724 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.38425 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.47686 * 180.02562 * 23 22 21 38 38 H 1.07999 * 119.90380 * 179.72710 * 26 12 11 39 39 H 1.07996 * 120.09611 * 180.26051 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8839 2.3965 -1.2126 6 1 1.8840 2.3964 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0489 -1.2343 0.2874 9 6 1.3536 -2.4046 -0.3776 10 6 1.8264 -3.6480 0.0846 11 6 1.1886 -4.7962 -0.2848 12 6 0.0723 -4.7407 -1.1164 13 8 -0.5560 -5.8871 -1.4795 14 6 -1.6941 -5.7604 -2.3344 15 6 -2.2642 -7.1483 -2.6336 16 16 -3.7094 -6.9874 -3.7181 17 6 -4.2206 -8.6579 -3.9477 18 7 -3.6283 -9.7238 -3.4135 19 6 -4.2678 -10.8267 -3.7882 20 7 -4.0641 -12.1217 -3.5207 21 6 -4.8529 -13.0459 -4.0215 22 6 -5.9247 -12.6876 -4.8468 23 6 -6.1389 -11.3747 -5.1237 24 7 -5.3056 -10.4438 -4.5905 25 7 -5.2522 -9.0460 -4.6705 26 6 -0.3990 -3.5151 -1.5819 27 6 0.2242 -2.3574 -1.2176 28 1 -0.4851 0.8401 0.0004 29 1 2.6920 -3.6927 0.7290 30 1 1.5501 -5.7506 0.0684 31 1 -1.3965 -5.2814 -3.2671 32 1 -2.4535 -5.1539 -1.8407 33 1 -2.5619 -7.6277 -1.7010 34 1 -1.5046 -7.7544 -3.1274 35 1 -4.6731 -14.0866 -3.7952 36 1 -6.5741 -13.4458 -5.2589 37 1 -6.9603 -11.0755 -5.7579 38 1 -1.2624 -3.4812 -2.2298 39 1 -0.1449 -1.4078 -1.5759 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071899331.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:58 Heat of formation + Delta-G solvation = 124.150407 kcal Electronic energy + Delta-G solvation = -24302.613253 eV Core-core repulsion = 20532.578340 eV Total energy + Delta-G solvation = -3770.034913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.089 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.28444 -39.19340 -38.83078 -36.48564 -35.05072 -33.44583 -31.86108 -31.65791 -31.02641 -29.62872 -28.89881 -25.76366 -25.02231 -24.68732 -23.44867 -22.74058 -21.01639 -20.27991 -18.99478 -18.68821 -17.49721 -17.35097 -17.11809 -17.09626 -16.18791 -15.76596 -15.38468 -15.12332 -14.64264 -14.05508 -13.90272 -13.79737 -13.70871 -13.19086 -13.13312 -12.99607 -12.61158 -12.46894 -12.33732 -11.87490 -11.42240 -11.28599 -11.09526 -10.96686 -10.84355 -10.62772 -10.58499 -10.52705 -10.51680 -9.92383 -9.77367 -9.36743 -9.34981 -9.00862 -8.08734 -7.64546 -7.01928 -6.72298 -4.24571 -0.13082 0.16929 0.54127 1.61077 1.79698 1.92887 2.76481 2.89714 2.96238 2.97774 3.09809 3.15061 3.21297 3.60443 3.72449 3.96192 4.17238 4.24422 4.53341 4.62069 4.69004 4.92272 5.01166 5.17403 5.33647 5.47141 5.55404 5.66196 5.68121 5.78300 5.86693 6.12662 6.28967 6.71184 6.89008 6.90150 7.07585 7.28655 7.30242 7.40889 7.56671 7.91195 8.01184 8.15629 8.42980 8.65066 8.91024 8.99460 10.22489 Molecular weight = 342.09amu Principal moments of inertia in cm(-1) A = 0.036761 B = 0.001641 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.495152 B =17058.163178 C =17729.039224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.087 3.913 10 C -0.196 4.196 11 C -0.110 4.110 12 C -0.011 4.011 13 O -0.322 6.322 14 C 0.085 3.915 15 C -0.113 4.113 16 S 0.059 5.941 17 C 0.253 3.747 18 N -0.518 5.518 19 C 0.451 3.549 20 N -0.454 5.454 21 C 0.208 3.792 22 C -0.226 4.226 23 C 0.175 3.825 24 N -0.324 5.324 25 N -0.312 5.312 26 C -0.172 4.172 27 C -0.134 4.134 28 H 0.279 0.721 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.192 0.808 36 H 0.176 0.824 37 H 0.184 0.816 38 H 0.095 0.905 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.785 -22.228 -11.327 29.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.492 4.492 8 H 0.096 0.904 9 C 0.085 3.915 10 C -0.216 4.216 11 C -0.129 4.129 12 C -0.055 4.055 13 O -0.238 6.238 14 C 0.007 3.993 15 C -0.262 4.262 16 S 0.288 5.712 17 C -0.135 4.135 18 N -0.253 5.253 19 C 0.088 3.912 20 N -0.169 5.169 21 C 0.022 3.978 22 C -0.252 4.252 23 C 0.036 3.964 24 N -0.103 5.103 25 N -0.148 5.148 26 C -0.191 4.191 27 C -0.153 4.153 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.209 0.791 36 H 0.194 0.806 37 H 0.202 0.798 38 H 0.113 0.887 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.691 -20.610 -11.219 27.685 hybrid contribution -0.169 -0.386 -0.136 0.443 sum -14.860 -20.996 -11.355 28.118 Atomic orbital electron populations 1.69848 1.07536 1.29001 1.36125 1.25884 0.94708 1.01255 0.92373 0.86291 0.81017 0.81093 0.78481 1.18429 1.19789 1.20081 1.19508 0.98150 0.91212 1.40320 0.90418 1.17620 0.91804 0.92210 0.89849 1.20594 1.03236 0.92183 1.05606 1.19610 0.95404 0.97743 1.00120 1.18537 0.97814 0.83575 1.05541 1.85786 1.41772 1.31226 1.65016 1.21885 0.89118 0.93181 0.95090 1.23548 0.97631 1.02161 1.02843 1.85598 1.34294 0.90609 1.60740 1.26400 0.92466 1.00650 0.93965 1.71267 1.29767 0.94309 1.29964 1.22773 0.85576 0.92942 0.89884 1.68080 1.28754 0.95839 1.24224 1.23638 0.87144 0.99593 0.87430 1.21980 1.03131 0.95115 1.04967 1.22211 0.93293 0.86821 0.94046 1.48826 1.21627 1.07400 1.32442 1.78922 1.23022 0.83421 1.29446 1.20618 1.01493 0.92871 1.04137 1.20943 0.98499 0.96489 0.99408 0.91016 0.88148 0.88424 0.91907 0.91828 0.87558 0.87567 0.79097 0.80645 0.79844 0.88666 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.77 10.96 55.54 0.61 -20.16 16 2 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.77 29.60 -169.99 -5.03 13.73 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 7 C -0.46 -12.31 9.04 -37.83 -0.34 -12.65 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 9 C 0.09 2.35 5.57 -106.80 -0.60 1.75 16 10 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 11 C -0.11 -2.58 9.92 -39.83 -0.40 -2.98 16 12 C -0.01 -0.27 6.71 -38.78 -0.26 -0.53 16 13 O -0.32 -6.62 10.12 -18.73 -0.19 -6.81 16 14 C 0.09 1.40 4.74 37.16 0.18 1.57 16 15 C -0.11 -1.60 5.91 37.16 0.22 -1.38 16 16 S 0.06 0.78 22.16 -107.50 -2.38 -1.60 16 17 C 0.25 3.69 8.24 -91.00 -0.75 2.94 16 18 N -0.52 -8.02 10.80 -14.59 -0.16 -8.18 16 19 C 0.45 5.90 8.99 -323.11 -2.90 3.00 16 20 N -0.45 -4.72 10.48 -13.83 -0.14 -4.86 16 21 C 0.21 0.92 11.26 -17.09 -0.19 0.72 16 22 C -0.23 -0.53 10.07 -39.79 -0.40 -0.93 16 23 C 0.18 0.92 11.31 -16.62 -0.19 0.73 16 24 N -0.32 -3.57 3.90 -13.85 -0.05 -3.62 16 25 N -0.31 -4.25 12.81 30.12 0.39 -3.86 16 26 C -0.17 -4.07 8.96 -39.83 -0.36 -4.42 16 27 C -0.13 -3.49 8.64 -39.25 -0.34 -3.83 16 28 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 29 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 30 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 31 H 0.06 0.99 7.63 -51.93 -0.40 0.59 16 32 H 0.06 1.02 7.66 -51.93 -0.40 0.63 16 33 H 0.11 1.54 8.14 -51.92 -0.42 1.11 16 34 H 0.11 1.52 8.14 -51.92 -0.42 1.10 16 35 H 0.19 -0.01 8.06 -52.48 -0.42 -0.44 16 36 H 0.18 -0.38 8.06 -52.49 -0.42 -0.80 16 37 H 0.18 0.32 8.06 -52.49 -0.42 -0.10 16 38 H 0.10 1.99 6.27 -52.49 -0.33 1.66 16 39 H 0.12 3.25 6.16 -52.49 -0.32 2.92 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -34.39 356.89 -12.34 -46.73 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -3.96 Total: 2.73 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -6.80 Total: -19.47 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.64 Total: -40.69 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.19 Total: -6.81 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.73 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.38 Total: -1.60 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.39 -12.34 -46.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071899331.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.877 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds