Wall clock time and date at job start Tue Mar 31 2020 05:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48496 * 109.47008 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46999 * 300.00242 * 3 2 1 6 6 H 1.48496 * 109.47159 * 60.00167 * 3 2 1 7 7 C 1.39890 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99582 * 197.93075 * 7 2 1 9 9 C 1.41216 * 120.00158 * 17.93409 * 7 2 1 10 10 C 1.40832 * 120.17770 * 204.54001 * 9 7 2 11 11 C 1.36438 * 119.81374 * 180.02562 * 10 9 7 12 12 C 1.39313 * 120.17908 * 359.97438 * 11 10 9 13 13 O 1.35675 * 119.81379 * 179.97438 * 12 11 10 14 14 C 1.42902 * 117.00011 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46992 * 179.97438 * 14 13 12 16 16 S 1.81397 * 109.46870 * 179.97438 * 15 14 13 17 17 C 1.76207 * 103.00038 * 180.02562 * 16 15 14 18 18 N 1.33123 * 125.28667 * 0.02562 * 17 16 15 19 19 C 1.32881 * 109.71354 * 179.97438 * 18 17 16 20 20 N 1.33794 * 132.36039 * 180.02562 * 19 18 17 21 21 C 1.31419 * 120.87326 * 179.97438 * 20 19 18 22 22 C 1.39941 * 120.28802 * 359.97438 * 21 20 19 23 23 C 1.35876 * 119.23242 * 0.02562 * 22 21 20 24 24 N 1.35842 * 119.04182 * 359.97438 * 23 22 21 25 25 N 1.31801 * 125.28884 * 179.72315 * 17 16 15 26 26 C 1.39311 * 120.36844 * 0.25461 * 12 11 10 27 27 C 1.36437 * 120.18553 * 359.48433 * 26 12 11 28 28 H 0.97005 * 120.00310 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.09178 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.91105 * 179.97438 * 11 10 9 31 31 H 1.08993 * 109.47384 * 59.99891 * 14 13 12 32 32 H 1.09002 * 109.46957 * 299.99669 * 14 13 12 33 33 H 1.09005 * 109.47335 * 60.00062 * 15 14 13 34 34 H 1.09002 * 109.47144 * 299.99731 * 15 14 13 35 35 H 1.08003 * 119.85724 * 179.97438 * 21 20 19 36 36 H 1.08002 * 120.38425 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.47686 * 180.02562 * 23 22 21 38 38 H 1.07999 * 119.90380 * 179.72710 * 26 12 11 39 39 H 1.07996 * 120.09611 * 180.26051 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8839 2.3965 -1.2126 6 1 1.8840 2.3964 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0489 -1.2343 0.2874 9 6 1.3536 -2.4046 -0.3776 10 6 1.8264 -3.6480 0.0846 11 6 1.1886 -4.7962 -0.2848 12 6 0.0723 -4.7407 -1.1164 13 8 -0.5560 -5.8871 -1.4795 14 6 -1.6941 -5.7604 -2.3344 15 6 -2.2642 -7.1483 -2.6336 16 16 -3.7094 -6.9874 -3.7181 17 6 -4.2206 -8.6579 -3.9477 18 7 -3.6283 -9.7238 -3.4135 19 6 -4.2678 -10.8267 -3.7882 20 7 -4.0641 -12.1217 -3.5207 21 6 -4.8529 -13.0459 -4.0215 22 6 -5.9247 -12.6876 -4.8468 23 6 -6.1389 -11.3747 -5.1237 24 7 -5.3056 -10.4438 -4.5905 25 7 -5.2522 -9.0460 -4.6705 26 6 -0.3990 -3.5151 -1.5819 27 6 0.2242 -2.3574 -1.2176 28 1 -0.4851 0.8401 0.0004 29 1 2.6920 -3.6927 0.7290 30 1 1.5501 -5.7506 0.0684 31 1 -1.3965 -5.2814 -3.2671 32 1 -2.4535 -5.1539 -1.8407 33 1 -2.5619 -7.6277 -1.7010 34 1 -1.5046 -7.7544 -3.1274 35 1 -4.6731 -14.0866 -3.7952 36 1 -6.5741 -13.4458 -5.2589 37 1 -6.9603 -11.0755 -5.7579 38 1 -1.2624 -3.4812 -2.2298 39 1 -0.1449 -1.4078 -1.5759 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071899331.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:57 Heat of formation + Delta-G solvation = 105.439697 kcal Electronic energy + Delta-G solvation = -24303.424610 eV Core-core repulsion = 20532.578340 eV Total energy + Delta-G solvation = -3770.846271 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.089 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.02206 -40.57315 -39.81650 -38.28071 -35.70554 -35.30930 -33.02707 -32.43346 -31.87419 -31.53262 -30.74533 -26.80735 -26.36151 -25.57820 -24.64596 -23.65146 -22.89080 -22.01368 -19.67104 -19.39050 -19.27216 -18.86235 -18.07213 -17.88944 -17.18104 -17.13918 -16.78984 -16.26898 -15.78161 -15.57905 -15.18449 -14.80800 -14.76790 -14.29961 -14.17575 -14.13496 -14.05731 -13.84515 -13.68561 -13.37392 -13.12769 -12.88522 -12.72405 -12.64358 -12.26845 -11.92554 -11.67341 -11.59805 -11.56405 -11.23577 -11.21732 -11.08035 -10.87250 -10.07891 -9.56676 -9.07232 -8.92871 -8.60152 -6.22665 -0.58595 -0.46696 -0.42459 0.73841 0.92796 0.94414 1.04799 1.12370 1.40671 1.51120 1.56007 2.23643 2.29702 2.34455 2.66122 2.72464 2.95148 3.46298 3.66440 3.67922 3.73131 3.93293 4.16717 4.19320 4.32599 4.36563 4.41112 4.49574 4.51173 4.62686 4.75165 4.90635 4.97067 5.01788 5.15366 5.25456 5.37127 5.50855 5.66167 5.96892 6.06637 6.22854 6.23843 6.54594 6.55813 6.76286 6.95436 7.07914 8.37018 Molecular weight = 342.09amu Principal moments of inertia in cm(-1) A = 0.036761 B = 0.001641 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.495152 B =17058.163178 C =17729.039224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.497 4.497 8 H 0.076 0.924 9 C 0.055 3.945 10 C -0.205 4.205 11 C -0.118 4.118 12 C -0.004 4.004 13 O -0.328 6.328 14 C 0.082 3.918 15 C -0.102 4.102 16 S 0.074 5.926 17 C 0.235 3.765 18 N -0.566 5.566 19 C 0.430 3.570 20 N -0.498 5.498 21 C 0.216 3.784 22 C -0.185 4.185 23 C 0.147 3.853 24 N -0.328 5.328 25 N -0.334 5.334 26 C -0.174 4.174 27 C -0.155 4.155 28 H 0.287 0.713 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.241 0.759 36 H 0.236 0.764 37 H 0.218 0.782 38 H 0.120 0.880 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.457 -24.761 -12.601 32.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.527 4.527 8 H 0.095 0.905 9 C 0.052 3.948 10 C -0.225 4.225 11 C -0.137 4.137 12 C -0.048 4.048 13 O -0.244 6.244 14 C 0.004 3.996 15 C -0.251 4.251 16 S 0.302 5.698 17 C -0.154 4.154 18 N -0.303 5.303 19 C 0.069 3.931 20 N -0.216 5.216 21 C 0.034 3.966 22 C -0.209 4.209 23 C 0.011 3.989 24 N -0.107 5.107 25 N -0.171 5.171 26 C -0.193 4.193 27 C -0.174 4.174 28 H 0.098 0.902 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.257 0.743 36 H 0.252 0.748 37 H 0.234 0.766 38 H 0.138 0.862 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.414 -23.230 -12.522 31.078 hybrid contribution 0.122 -0.065 0.153 0.206 sum -16.293 -23.295 -12.370 31.002 Atomic orbital electron populations 1.69895 1.08962 1.30404 1.36475 1.26735 0.95485 1.04470 0.91335 0.85160 0.79437 0.76262 0.78837 1.18172 1.18970 1.19182 1.19751 0.98396 0.92384 1.42189 0.90537 1.17989 0.92720 0.93261 0.90788 1.20796 1.03744 0.92134 1.05780 1.19898 0.95458 0.98338 0.99998 1.18659 0.97493 0.84190 1.04469 1.85776 1.42975 1.30017 1.65678 1.22095 0.87899 0.94789 0.94772 1.23320 0.98239 1.00551 1.03004 1.85332 1.33352 0.90746 1.60360 1.26401 0.93220 1.00811 0.94952 1.71093 1.31768 0.95464 1.31965 1.22901 0.86170 0.93526 0.90549 1.68186 1.31389 0.95302 1.26704 1.24706 0.85959 1.00523 0.85373 1.22729 1.01703 0.94827 1.01626 1.23239 0.93769 0.87077 0.94814 1.48879 1.22269 1.06842 1.32736 1.78706 1.23052 0.85468 1.29865 1.20833 1.01962 0.92348 1.04142 1.20917 0.99279 0.96792 1.00450 0.90214 0.87087 0.86148 0.90938 0.91293 0.88131 0.87942 0.74334 0.74763 0.76559 0.86242 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.11 10.96 21.82 0.24 -43.87 16 2 C 0.03 1.72 5.13 85.23 0.44 2.16 16 3 Si 0.98 38.80 29.60 68.60 2.03 40.83 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 5 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.50 -27.28 9.04 23.40 0.21 -27.06 16 8 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 9 C 0.05 3.02 5.57 -21.28 -0.12 2.90 16 10 C -0.20 -10.37 9.74 22.48 0.22 -10.15 16 11 C -0.12 -5.57 9.92 22.11 0.22 -5.35 16 12 C 0.00 -0.20 6.71 22.79 0.15 -0.04 16 13 O -0.33 -13.42 10.12 -89.92 -0.91 -14.33 16 14 C 0.08 2.67 4.74 71.98 0.34 3.01 16 15 C -0.10 -2.96 5.91 71.98 0.43 -2.53 16 16 S 0.07 2.01 22.16 -56.49 -1.25 0.75 16 17 C 0.23 7.11 8.24 180.48 1.49 8.60 16 18 N -0.57 -18.32 10.80 -200.07 -2.16 -20.48 16 19 C 0.43 11.35 8.99 261.59 2.35 13.70 16 20 N -0.50 -9.78 10.48 -197.66 -2.07 -11.85 16 21 C 0.22 1.06 11.26 85.17 0.96 2.02 16 22 C -0.18 0.09 10.07 22.13 0.22 0.31 16 23 C 0.15 1.10 11.31 83.52 0.94 2.04 16 24 N -0.33 -7.02 3.90 -197.72 -0.77 -7.79 16 25 N -0.33 -9.27 12.81 -58.61 -0.75 -10.02 16 26 C -0.17 -8.30 8.96 22.11 0.20 -8.10 16 27 C -0.15 -8.31 8.64 22.48 0.19 -8.12 16 28 H 0.29 13.74 8.30 -92.70 -0.77 12.97 16 29 H 0.11 5.21 8.06 -2.91 -0.02 5.18 16 30 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 31 H 0.07 2.24 7.63 -2.39 -0.02 2.23 16 32 H 0.07 2.20 7.66 -2.39 -0.02 2.18 16 33 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 34 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 35 H 0.24 -1.37 8.06 -2.91 -0.02 -1.39 16 36 H 0.24 -2.86 8.06 -2.91 -0.02 -2.89 16 37 H 0.22 -0.04 8.06 -2.91 -0.02 -0.06 16 38 H 0.12 4.97 6.27 -2.91 -0.02 4.95 16 39 H 0.11 6.00 6.16 -2.91 -0.02 5.98 16 Total: -1.00 -80.93 356.89 3.70 -77.23 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 1.10 Total: 16.14 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 8.25 Total: -26.61 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -5.51 Total: -94.01 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.91 Total: -14.33 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.25 Total: 0.75 kcal Total: -80.93 3.70 -77.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071899331.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.668 kcal (2) G-P(sol) polarization free energy of solvation -80.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds