Wall clock time and date at job start Tue Mar 31 2020 05:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47329 * 2 1 4 4 N 1.28443 * 125.18767 * 310.47129 * 3 2 1 5 5 C 1.30866 * 110.92518 * 180.02562 * 4 3 2 6 6 C 1.50705 * 126.06603 * 180.02562 * 5 4 3 7 7 C 1.39669 * 107.87074 * 359.74059 * 5 4 3 8 8 C 1.36597 * 125.18904 * 130.51156 * 3 2 1 9 9 C 1.47130 * 126.89163 * 359.96505 * 8 3 2 10 10 O 1.21644 * 120.00068 * 128.53821 * 9 8 3 11 11 N 1.34779 * 119.99908 * 308.54903 * 9 8 3 12 12 C 1.46502 * 120.00135 * 8.18786 * 11 9 8 13 13 C 1.50701 * 109.47262 * 135.95746 * 12 11 9 14 14 H 1.07993 * 119.99654 * 123.69594 * 13 12 11 15 15 C 1.37877 * 119.99928 * 303.69681 * 13 12 11 16 16 N 1.31514 * 119.99901 * 209.33678 * 15 13 12 17 17 Si 1.86806 * 120.00121 * 29.34128 * 15 13 12 18 18 H 1.48495 * 109.47014 * 87.58629 * 17 15 13 19 19 H 1.48492 * 109.46995 * 207.59094 * 17 15 13 20 20 H 1.48504 * 109.46679 * 327.58997 * 17 15 13 21 21 C 1.39827 * 120.00006 * 188.19422 * 11 9 8 22 22 C 1.38912 * 120.07283 * 174.62892 * 21 11 9 23 23 C 1.38092 * 119.92902 * 180.02562 * 22 21 11 24 24 C 1.38309 * 120.06927 * 359.97438 * 23 22 21 25 25 C 1.50694 * 119.92302 * 180.02562 * 24 23 22 26 26 C 1.38259 * 120.14784 * 0.02562 * 24 23 22 27 27 C 1.50696 * 119.96377 * 179.97438 * 26 24 23 28 28 C 1.38126 * 120.07076 * 359.72375 * 26 24 23 29 29 H 1.09007 * 109.46941 * 307.51536 * 1 2 3 30 30 H 1.08999 * 109.47649 * 67.51503 * 1 2 3 31 31 H 1.08997 * 109.47257 * 187.52448 * 1 2 3 32 32 H 1.09002 * 109.47045 * 239.99961 * 2 1 3 33 33 H 1.09000 * 109.47261 * 120.00346 * 2 1 3 34 34 H 1.09001 * 109.47392 * 89.97098 * 6 5 4 35 35 H 1.08997 * 109.47182 * 209.97967 * 6 5 4 36 36 H 1.09010 * 109.46686 * 329.97242 * 6 5 4 37 37 H 1.07996 * 127.32319 * 180.27368 * 7 5 4 38 38 H 1.09005 * 109.46821 * 15.96140 * 12 11 9 39 39 H 1.09003 * 109.47261 * 255.96441 * 12 11 9 40 40 H 0.97001 * 119.99527 * 180.02562 * 16 15 13 41 41 H 1.08002 * 120.03872 * 0.02811 * 22 21 11 42 42 H 1.08000 * 119.96233 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.46845 * 90.00506 * 25 24 23 44 44 H 1.09003 * 109.47102 * 209.99747 * 25 24 23 45 45 H 1.08997 * 109.47594 * 330.00778 * 25 24 23 46 46 H 1.09005 * 109.47014 * 90.00369 * 27 26 24 47 47 H 1.09005 * 109.47474 * 209.99986 * 27 26 24 48 48 H 1.09000 * 109.47291 * 330.00412 * 27 26 24 49 49 H 1.08001 * 120.03732 * 180.27522 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 1.6227 2.3062 -0.7986 5 6 2.2432 3.4321 -0.5537 6 6 2.0409 4.7340 -1.2853 7 6 3.1215 3.2147 0.5104 8 6 2.9645 1.8816 0.8487 9 6 3.6704 1.1519 1.9135 10 8 4.8850 1.1859 1.9720 11 7 2.9714 0.4455 2.8240 12 6 1.5289 0.2549 2.6530 13 6 1.1732 -1.1795 2.9483 14 1 0.4345 -1.4084 3.7020 15 6 1.7910 -2.1994 2.2561 16 7 1.1569 -3.3332 2.0511 17 14 3.5286 -1.9709 1.6096 18 1 4.5029 -2.3596 2.6606 19 1 3.7269 -2.8244 0.4107 20 1 3.7372 -0.5469 1.2435 21 6 3.6229 -0.1053 3.9318 22 6 2.8891 -0.7374 4.9277 23 6 3.5356 -1.2798 6.0208 24 6 4.9122 -1.1949 6.1243 25 6 5.6143 -1.7885 7.3183 26 6 5.6455 -0.5665 5.1349 27 6 7.1451 -0.4758 5.2522 28 6 5.0055 -0.0264 4.0365 29 1 -0.3633 0.6259 0.8152 30 1 -0.3634 0.3930 -0.9495 31 1 -0.3633 -1.0188 0.1346 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.2553 5.3084 -0.7945 35 1 2.9693 5.3049 -1.2744 36 1 1.7518 4.5301 -2.3164 37 1 3.7840 3.9333 0.9698 38 1 1.2499 0.4946 1.6269 39 1 0.9920 0.9109 3.3382 40 1 1.5917 -4.0509 1.5645 41 1 1.8142 -0.8045 4.8472 42 1 2.9657 -1.7717 6.7951 43 1 5.8763 -2.8253 7.1072 44 1 6.5206 -1.2199 7.5266 45 1 4.9538 -1.7499 8.1845 46 1 7.5998 -1.3477 4.7818 47 1 7.4945 0.4290 4.7547 48 1 7.4259 -0.4431 6.3049 49 1 5.5792 0.4605 3.2617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071900172.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:08 Heat of formation + Delta-G solvation = 158.317067 kcal Electronic energy + Delta-G solvation = -32025.778316 eV Core-core repulsion = 28151.564209 eV Total energy + Delta-G solvation = -3874.214107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.54764 -40.40684 -38.17663 -36.57221 -34.60848 -32.93182 -32.05683 -31.54419 -31.19976 -30.18735 -28.52226 -27.32934 -26.57915 -25.82527 -23.42731 -22.93038 -22.53539 -21.62037 -20.73464 -19.65039 -18.55674 -17.71556 -17.17143 -16.68208 -16.03402 -15.81628 -15.26113 -14.89222 -14.57430 -14.27580 -14.04943 -13.82235 -13.66635 -13.46980 -13.11958 -13.00674 -12.88701 -12.65435 -12.48915 -12.29492 -12.16227 -12.06138 -11.99931 -11.86657 -11.68033 -11.58810 -11.38763 -11.11368 -10.99951 -10.73216 -10.49654 -10.39258 -10.25549 -10.07310 -9.64319 -9.05986 -8.94113 -8.69223 -8.64395 -8.56738 -7.97067 -6.95798 -6.66232 -4.56923 1.58902 2.11382 2.16089 2.63024 2.85336 2.90812 3.12062 3.28069 3.50635 3.55142 4.02511 4.48698 4.54851 4.72766 4.89967 5.18599 5.27498 5.33310 5.36238 5.43939 5.51098 5.63064 5.64792 5.67367 5.72143 5.80875 5.87705 5.92004 5.93187 6.01752 6.05900 6.09777 6.14898 6.16044 6.19893 6.26512 6.28823 6.39604 6.46900 6.52317 6.58145 6.74871 6.81100 7.01939 7.06181 7.14304 7.15237 7.27676 7.36947 7.82550 7.94207 8.04226 8.37993 8.41514 8.56274 8.97634 10.39324 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013273 B = 0.005271 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.074721 B = 5310.819873 C = 6543.085307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.072 3.928 3 N -0.263 5.263 4 N -0.279 5.279 5 C 0.014 3.986 6 C -0.060 4.060 7 C -0.183 4.183 8 C -0.020 4.020 9 C 0.598 3.402 10 O -0.522 6.522 11 N -0.541 5.541 12 C 0.146 3.854 13 C -0.548 4.548 14 H 0.093 0.907 15 C 0.097 3.903 16 N -0.840 5.840 17 Si 0.840 3.160 18 H -0.260 1.260 19 H -0.299 1.299 20 H -0.252 1.252 21 C 0.156 3.844 22 C -0.114 4.114 23 C -0.115 4.115 24 C -0.122 4.122 25 C -0.107 4.107 26 C -0.089 4.089 27 C -0.108 4.108 28 C -0.174 4.174 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.152 0.848 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.156 0.844 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.272 0.728 41 H 0.158 0.842 42 H 0.116 0.884 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 7.776 1.050 8.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.046 4.046 3 N -0.052 5.052 4 N -0.113 5.113 5 C -0.143 4.143 6 C -0.119 4.119 7 C -0.212 4.212 8 C -0.149 4.149 9 C 0.388 3.612 10 O -0.400 6.400 11 N -0.264 5.264 12 C 0.029 3.971 13 C -0.584 4.584 14 H 0.111 0.889 15 C -0.113 4.113 16 N -0.472 5.472 17 Si 0.668 3.332 18 H -0.185 1.185 19 H -0.227 1.227 20 H -0.179 1.179 21 C 0.061 3.939 22 C -0.134 4.134 23 C -0.133 4.133 24 C -0.123 4.123 25 C -0.163 4.163 26 C -0.089 4.089 27 C -0.164 4.164 28 C -0.194 4.194 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.169 0.831 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.173 0.827 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.176 0.824 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.558 6.948 0.257 7.408 hybrid contribution 1.494 -0.076 0.203 1.510 sum 4.052 6.872 0.460 7.991 Atomic orbital electron populations 1.21959 0.91675 1.04644 1.02361 1.23139 0.98510 0.76204 1.06726 1.46173 1.26603 1.10008 1.22385 1.72977 1.23435 0.97507 1.17344 1.21915 0.98500 0.94929 0.98951 1.20007 1.02249 0.90453 0.99177 1.21817 1.04776 0.93857 1.00755 1.21684 0.98450 0.95639 0.99099 1.16860 0.86170 0.77269 0.80894 1.90407 1.13278 1.62732 1.73604 1.47224 1.11964 1.46588 1.20640 1.21397 0.75646 0.98824 1.01222 1.20786 1.25492 0.87849 1.24278 0.88900 1.24909 0.97277 0.95307 0.93782 1.70096 1.35792 1.05814 1.35456 0.88208 0.87020 0.78576 0.79389 1.18457 1.22677 1.17855 1.17702 0.91269 0.97257 0.87638 1.21643 1.02573 0.97434 0.91740 1.20788 0.93404 1.01006 0.98129 1.19628 0.93946 1.01759 0.96932 1.20733 0.99908 1.00142 0.95563 1.19514 0.95301 0.99433 0.94689 1.20741 0.92233 1.01801 1.01644 1.22549 0.93691 1.02762 1.00356 0.91286 0.92032 0.88972 0.90214 0.83101 0.91138 0.90912 0.91278 0.82651 0.90039 0.93965 0.91777 0.82431 0.86635 0.92120 0.91932 0.92322 0.92006 0.92031 0.91776 0.80926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.31 37.16 0.35 -2.20 16 2 C 0.07 1.39 4.82 -4.04 -0.02 1.37 16 3 N -0.26 -5.12 3.05 -67.38 -0.21 -5.33 16 4 N -0.28 -5.09 11.54 33.64 0.39 -4.70 16 5 C 0.01 0.23 7.22 -82.47 -0.60 -0.37 16 6 C -0.06 -0.68 10.45 36.01 0.38 -0.30 16 7 C -0.18 -3.18 10.97 -38.98 -0.43 -3.61 16 8 C -0.02 -0.41 5.95 -82.06 -0.49 -0.90 16 9 C 0.60 13.09 4.29 -12.65 -0.05 13.04 16 10 O -0.52 -12.04 13.17 5.24 0.07 -11.97 16 11 N -0.54 -11.80 1.55 -116.04 -0.18 -11.98 16 12 C 0.15 3.08 4.59 -5.19 -0.02 3.06 16 13 C -0.55 -12.76 6.32 -34.44 -0.22 -12.98 16 14 H 0.09 2.30 7.55 -52.49 -0.40 1.90 16 15 C 0.10 2.40 4.72 -17.82 -0.08 2.31 16 16 N -0.84 -21.87 13.96 55.43 0.77 -21.10 16 17 Si 0.84 20.48 21.24 -169.99 -3.61 16.87 16 18 H -0.26 -6.78 6.73 56.52 0.38 -6.40 16 19 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.25 -5.99 2.12 56.52 0.12 -5.87 16 21 C 0.16 3.42 3.71 -83.73 -0.31 3.11 16 22 C -0.11 -2.39 8.19 -39.39 -0.32 -2.71 16 23 C -0.11 -2.15 9.69 -39.61 -0.38 -2.53 16 24 C -0.12 -2.17 5.88 -104.59 -0.62 -2.79 16 25 C -0.11 -1.46 9.60 36.00 0.35 -1.11 16 26 C -0.09 -1.68 5.88 -104.66 -0.62 -2.29 16 27 C -0.11 -1.62 9.60 36.00 0.35 -1.27 16 28 C -0.17 -3.74 7.66 -39.39 -0.30 -4.04 16 29 H 0.07 1.19 7.18 -51.93 -0.37 0.82 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.15 3.22 0.15 -51.93 -0.01 3.21 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 37 H 0.16 2.32 8.06 -52.49 -0.42 1.90 16 38 H 0.08 1.67 0.91 -66.99 -0.06 1.61 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.16 3.36 4.92 -52.49 -0.26 3.10 16 42 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.75 5.94 -51.93 -0.31 0.45 16 45 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 48 H 0.06 0.81 5.94 -51.93 -0.31 0.50 16 49 H 0.17 3.89 4.50 -56.31 -0.25 3.64 16 LS Contribution 360.26 15.07 5.43 5.43 Total: -1.00 -28.32 360.26 -7.28 -35.60 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -6.90 Total: 11.40 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -3.05 Total: -14.22 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.78 Total: -43.11 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.07 Total: -11.97 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -3.61 Total: 16.87 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.32 -7.28 -35.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071900172.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.915 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds