Wall clock time and date at job start Tue Mar 31 2020 06:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47233 * 2 1 4 4 C 1.53007 * 109.46997 * 119.99400 * 2 1 3 5 5 H 1.09001 * 109.47023 * 305.65818 * 4 2 1 6 6 C 1.53005 * 109.46677 * 65.65852 * 4 2 1 7 7 N 1.46493 * 109.46990 * 185.65698 * 4 2 1 8 8 C 1.46504 * 120.00107 * 288.42310 * 7 4 2 9 9 C 1.53004 * 109.47129 * 90.39734 * 8 7 4 10 10 F 1.39905 * 109.46940 * 50.66015 * 9 8 7 11 11 F 1.39896 * 109.47199 * 170.66389 * 9 8 7 12 12 F 1.39902 * 109.47116 * 290.66659 * 9 8 7 13 13 C 1.34776 * 120.00054 * 108.42501 * 7 4 2 14 14 O 1.21542 * 119.99894 * 0.27177 * 13 7 4 15 15 C 1.47886 * 120.00275 * 179.97438 * 13 7 4 16 16 C 1.39920 * 120.02167 * 102.30272 * 15 13 7 17 17 C 1.38331 * 120.35650 * 179.69731 * 16 15 13 18 18 C 1.37749 * 120.41074 * 0.60366 * 17 16 15 19 19 C 1.40752 * 120.04180 * 359.67824 * 18 17 16 20 20 C 1.41432 * 120.17951 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00292 * 148.21444 * 20 19 18 22 22 C 1.39936 * 120.00134 * 328.21061 * 20 19 18 23 23 N 1.30829 * 119.99926 * 166.62515 * 22 20 19 24 24 Si 1.86802 * 119.99967 * 346.63244 * 22 20 19 25 25 H 1.48493 * 109.46968 * 92.68742 * 24 22 20 26 26 H 1.48493 * 109.47092 * 212.68810 * 24 22 20 27 27 H 1.48499 * 109.46959 * 332.68655 * 24 22 20 28 28 C 1.38993 * 120.02831 * 282.58185 * 15 13 7 29 29 H 1.09000 * 109.46893 * 300.00038 * 1 2 3 30 30 H 1.08992 * 109.46885 * 60.00151 * 1 2 3 31 31 H 1.09002 * 109.46945 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47216 * 239.99473 * 2 1 3 33 33 H 1.08996 * 109.47265 * 179.51993 * 3 2 1 34 34 H 1.09006 * 109.46732 * 299.51852 * 3 2 1 35 35 H 1.09002 * 109.47072 * 59.51342 * 3 2 1 36 36 H 1.08996 * 109.47005 * 303.22836 * 6 4 2 37 37 H 1.08999 * 109.47018 * 63.23641 * 6 4 2 38 38 H 1.09002 * 109.46737 * 183.22929 * 6 4 2 39 39 H 1.09005 * 109.47008 * 210.39506 * 8 7 4 40 40 H 1.08998 * 109.47253 * 330.39634 * 8 7 4 41 41 H 1.07994 * 119.82527 * 359.97438 * 16 15 13 42 42 H 1.08003 * 119.79998 * 180.30173 * 17 16 15 43 43 H 1.08006 * 119.98165 * 179.69966 * 18 17 16 44 44 H 0.97005 * 120.00063 * 179.97438 * 23 22 20 45 45 H 1.07996 * 120.19984 * 359.97161 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.5963 -0.2690 2.1364 6 6 1.6494 -2.1989 1.1803 7 7 3.4986 -0.6044 1.3194 8 6 4.3392 -1.3519 0.3808 9 6 4.5956 -0.5001 -0.8641 10 9 5.0495 0.7656 -0.4777 11 9 5.5639 -1.1194 -1.6616 12 9 3.4077 -0.3675 -1.5911 13 6 4.0672 0.1907 2.2472 14 8 3.3700 0.8070 3.0291 15 6 5.5397 0.3082 2.3183 16 6 6.1781 1.4371 1.7930 17 6 7.5545 1.5570 1.8613 18 6 8.3135 0.5614 2.4359 19 6 7.6895 -0.5841 2.9645 20 6 8.4660 -1.6079 3.5556 21 1 8.0620 -2.1896 4.3710 22 6 9.7577 -1.8672 3.0840 23 7 10.5701 -2.6190 3.7815 24 14 10.3221 -1.1397 1.4587 25 1 11.0025 0.1568 1.7064 26 1 11.2667 -2.0762 0.7986 27 1 9.1458 -0.9213 0.5791 28 6 6.2910 -0.7052 2.9018 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0086 34 1 1.6838 1.9538 -0.8943 35 1 1.6696 1.9589 0.8856 36 1 0.5683 -2.2841 1.0705 37 1 2.1395 -2.6647 0.3254 38 1 1.9622 -2.7005 2.0961 39 1 5.2892 -1.5940 0.8574 40 1 3.8321 -2.2727 0.0929 41 1 5.5928 2.2210 1.3357 42 1 8.0375 2.4345 1.4573 43 1 9.3881 0.6601 2.4812 44 1 11.4654 -2.7991 3.4544 45 1 5.8028 -1.5801 3.3049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071907527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:34 Heat of formation + Delta-G solvation = -162.995914 kcal Electronic energy + Delta-G solvation = -32888.052376 eV Core-core repulsion = 28262.611029 eV Total energy + Delta-G solvation = -4625.441348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.150 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -50.07067 -47.65089 -47.40443 -40.21848 -37.83651 -36.80211 -34.56106 -33.65745 -30.94125 -30.48647 -29.88669 -29.01288 -26.95438 -25.31728 -24.13501 -23.77186 -22.39515 -20.85541 -20.22513 -19.41665 -18.53075 -18.19908 -17.92473 -17.23897 -16.69512 -16.15563 -15.71406 -15.10806 -14.83747 -14.71720 -14.43670 -14.20655 -14.16138 -13.94928 -13.84824 -13.67465 -13.59741 -13.33716 -13.00428 -12.92573 -12.76078 -12.59372 -12.35122 -12.26701 -12.13179 -12.05447 -11.98809 -11.64184 -11.43018 -11.24895 -10.93559 -10.86291 -10.80045 -10.64413 -10.26343 -10.01081 -9.80597 -9.51046 -9.19859 -8.83718 -7.91764 -7.76219 -7.01166 -4.61944 2.14321 2.46542 2.57381 2.92093 3.03860 3.07333 3.15114 3.23307 3.88771 3.89156 4.08239 4.25685 4.35915 4.60727 4.82345 4.89419 4.99720 5.02651 5.21062 5.21819 5.28924 5.36381 5.45955 5.64377 5.72280 5.79162 5.87612 5.88872 5.90021 5.99431 6.07551 6.13268 6.26443 6.29059 6.43898 6.48777 6.52763 6.70118 6.92441 7.18401 7.25980 7.34212 7.51991 7.68848 7.85364 8.23309 8.31654 8.46549 8.67624 10.01245 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.016426 B = 0.004290 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.186266 B = 6524.702624 C = 6874.639603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 C -0.148 4.148 4 C 0.136 3.864 5 H 0.103 0.897 6 C -0.165 4.165 7 N -0.603 5.603 8 C 0.063 3.937 9 C 0.428 3.572 10 F -0.164 7.164 11 F -0.181 7.181 12 F -0.177 7.177 13 C 0.581 3.419 14 O -0.526 6.526 15 C -0.100 4.100 16 C -0.188 4.188 17 C -0.079 4.079 18 C -0.219 4.219 19 C 0.091 3.909 20 C -0.447 4.447 21 H 0.092 0.908 22 C 0.084 3.916 23 N -0.810 5.810 24 Si 0.909 3.091 25 H -0.269 1.269 26 H -0.291 1.291 27 H -0.243 1.243 28 C -0.180 4.180 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.138 0.862 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.286 0.714 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.475 0.335 -10.634 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C -0.206 4.206 4 C 0.034 3.966 5 H 0.121 0.879 6 C -0.223 4.223 7 N -0.336 5.336 8 C -0.063 4.063 9 C 0.372 3.628 10 F -0.145 7.145 11 F -0.163 7.163 12 F -0.159 7.159 13 C 0.372 3.628 14 O -0.401 6.401 15 C -0.103 4.103 16 C -0.208 4.208 17 C -0.098 4.098 18 C -0.238 4.238 19 C 0.088 3.912 20 C -0.476 4.476 21 H 0.110 0.890 22 C -0.135 4.135 23 N -0.434 5.434 24 Si 0.736 3.264 25 H -0.196 1.196 26 H -0.218 1.218 27 H -0.166 1.166 28 C -0.200 4.200 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.156 0.844 40 H 0.141 0.859 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.097 0.903 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.626 0.532 -10.102 16.971 hybrid contribution 0.555 0.420 -0.874 1.117 sum -13.071 0.951 -10.976 17.095 Atomic orbital electron populations 1.21823 0.94843 1.01531 1.01773 1.22221 0.96133 0.97684 0.99859 1.21883 1.02018 0.95467 1.01207 1.21261 0.79053 0.96236 1.00051 0.87861 1.22222 1.02288 0.95274 1.02516 1.47891 1.06201 1.46677 1.32809 1.22830 1.01360 0.94428 0.87726 1.21397 0.73846 0.80977 0.86564 1.93247 1.88718 1.41977 1.90560 1.93192 1.64264 1.82581 1.76234 1.92953 1.46006 1.96201 1.80710 1.19023 0.88940 0.76435 0.78415 1.90723 1.64477 1.44573 1.40345 1.19335 0.89760 0.97459 1.03710 1.20228 0.94037 0.98049 1.08441 1.20537 0.93437 0.97629 0.98167 1.21222 0.98626 0.95602 1.08394 1.17608 0.91559 0.92025 0.89995 1.19469 0.97053 1.15000 1.16036 0.88982 1.26128 0.95354 0.93204 0.98819 1.69655 1.07012 1.30052 1.36674 0.86354 0.79663 0.78160 0.82206 1.19567 1.21801 1.16584 1.21022 0.93928 0.97972 1.07081 0.92818 0.92664 0.92541 0.87553 0.92217 0.93139 0.92791 0.90770 0.92165 0.91743 0.84425 0.85897 0.88285 0.88126 0.87816 0.90341 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.96 37.16 0.33 -0.96 16 2 C -0.14 -1.56 1.87 -90.61 -0.17 -1.73 16 3 C -0.15 -1.94 8.00 37.16 0.30 -1.65 16 4 C 0.14 1.65 2.20 -67.93 -0.15 1.50 16 5 H 0.10 1.44 6.98 -51.93 -0.36 1.08 16 6 C -0.17 -1.52 8.83 37.16 0.33 -1.20 16 7 N -0.60 -8.68 1.51 -167.19 -0.25 -8.94 16 8 C 0.06 0.81 5.14 -4.04 -0.02 0.79 16 9 C 0.43 5.88 2.85 37.16 0.11 5.98 16 10 F -0.16 -2.64 11.30 2.25 0.03 -2.62 16 11 F -0.18 -2.59 17.32 2.25 0.04 -2.55 16 12 F -0.18 -2.18 11.92 2.25 0.03 -2.16 16 13 C 0.58 10.72 5.89 -12.31 -0.07 10.65 16 14 O -0.53 -11.07 16.47 5.33 0.09 -10.98 16 15 C -0.10 -2.01 3.86 -105.04 -0.41 -2.42 16 16 C -0.19 -3.80 7.69 -38.92 -0.30 -4.09 16 17 C -0.08 -1.64 10.01 -39.73 -0.40 -2.04 16 18 C -0.22 -4.98 7.05 -38.81 -0.27 -5.25 16 19 C 0.09 2.16 5.10 -106.87 -0.55 1.61 16 20 C -0.45 -11.41 9.59 -37.73 -0.36 -11.77 16 21 H 0.09 2.48 8.06 -52.48 -0.42 2.06 16 22 C 0.08 2.09 5.45 -17.34 -0.09 1.99 16 23 N -0.81 -20.80 13.93 55.55 0.77 -20.03 16 24 Si 0.91 19.77 24.44 -169.99 -4.15 15.61 16 25 H -0.27 -5.73 6.66 56.52 0.38 -5.35 16 26 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.24 -5.31 6.76 56.52 0.38 -4.93 16 28 C -0.18 -3.88 8.24 -38.44 -0.32 -4.20 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.43 6.52 -51.93 -0.34 0.09 16 32 H 0.11 1.16 4.69 -51.93 -0.24 0.92 16 33 H 0.06 0.89 4.05 -51.93 -0.21 0.68 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.57 6.44 -51.93 -0.33 0.23 16 37 H 0.06 0.49 6.25 -51.93 -0.32 0.16 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.14 1.99 5.91 -51.93 -0.31 1.68 16 40 H 0.12 1.16 5.83 -51.93 -0.30 0.85 16 41 H 0.10 1.90 7.62 -52.49 -0.40 1.50 16 42 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 43 H 0.10 2.36 4.56 -52.48 -0.24 2.12 16 44 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 45 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 350.18 15.07 5.28 5.28 Total: -1.00 -27.63 350.18 -5.84 -33.47 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.62 Total: 5.67 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -2.04 Total: -12.76 kcal Atomic # 7 Polarization: -29.49 SS G_CDS: 0.52 Total: -28.96 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 9 Polarization: -7.41 SS G_CDS: 0.09 Total: -7.32 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.15 Total: 15.61 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.63 -5.84 -33.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071907527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.525 kcal (2) G-P(sol) polarization free energy of solvation -27.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds