Wall clock time and date at job start Tue Mar 31 2020 06:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47114 * 2 1 4 4 C 1.53005 * 109.46908 * 119.99746 * 2 1 3 5 5 H 1.09002 * 109.47454 * 50.23297 * 4 2 1 6 6 C 1.53002 * 109.47134 * 290.23027 * 4 2 1 7 7 N 1.46505 * 109.47131 * 170.23235 * 4 2 1 8 8 C 1.46494 * 119.99666 * 65.03485 * 7 4 2 9 9 C 1.52995 * 109.47350 * 113.07500 * 8 7 4 10 10 F 1.39898 * 109.47308 * 65.98393 * 9 8 7 11 11 F 1.39901 * 109.47677 * 185.98687 * 9 8 7 12 12 F 1.39903 * 109.46832 * 305.98434 * 9 8 7 13 13 C 1.34774 * 119.99884 * 245.03488 * 7 4 2 14 14 O 1.21549 * 119.99571 * 179.60477 * 13 7 4 15 15 C 1.47881 * 120.00232 * 359.60364 * 13 7 4 16 16 C 1.39927 * 120.02431 * 47.72352 * 15 13 7 17 17 C 1.38328 * 120.35591 * 179.71619 * 16 15 13 18 18 C 1.37754 * 120.41462 * 0.55750 * 17 16 15 19 19 C 1.40754 * 120.03676 * 359.72080 * 18 17 16 20 20 C 1.41435 * 120.17538 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99860 * 30.51650 * 20 19 18 22 22 C 1.39936 * 119.99997 * 210.50841 * 20 19 18 23 23 N 1.30825 * 120.00032 * 8.75443 * 22 20 19 24 24 Si 1.86796 * 119.99915 * 188.75493 * 22 20 19 25 25 H 1.48502 * 109.47543 * 89.99941 * 24 22 20 26 26 H 1.48506 * 109.47129 * 209.99770 * 24 22 20 27 27 H 1.48502 * 109.47207 * 329.99847 * 24 22 20 28 28 C 1.38990 * 120.02649 * 227.99498 * 15 13 7 29 29 H 1.08998 * 109.47451 * 300.00273 * 1 2 3 30 30 H 1.08993 * 109.47283 * 60.00346 * 1 2 3 31 31 H 1.09006 * 109.46965 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47422 * 239.99202 * 2 1 3 33 33 H 1.08996 * 109.47305 * 75.87108 * 3 2 1 34 34 H 1.09004 * 109.47299 * 195.87151 * 3 2 1 35 35 H 1.09003 * 109.47055 * 315.87393 * 3 2 1 36 36 H 1.09010 * 109.46936 * 54.09649 * 6 4 2 37 37 H 1.08999 * 109.47094 * 174.09013 * 6 4 2 38 38 H 1.08996 * 109.47186 * 294.09490 * 6 4 2 39 39 H 1.09006 * 109.47237 * 233.07209 * 8 7 4 40 40 H 1.09003 * 109.47268 * 353.07275 * 8 7 4 41 41 H 1.07999 * 119.81693 * 359.97124 * 16 15 13 42 42 H 1.08004 * 119.79222 * 180.25010 * 17 16 15 43 43 H 1.07997 * 119.98454 * 179.73842 * 18 17 16 44 44 H 0.97001 * 120.00013 * 180.02562 * 23 22 20 45 45 H 1.08003 * 120.20327 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5413 -1.6862 1.3409 6 6 1.7396 0.1275 2.4865 7 7 3.4861 -0.9275 1.1380 8 6 4.3906 0.2246 1.1146 9 6 5.2434 0.2294 2.3848 10 9 6.0921 -0.8828 2.3810 11 9 6.0087 1.3997 2.4284 12 9 4.4093 0.1757 3.5067 13 6 3.9843 -2.1772 1.0571 14 8 5.1836 -2.3481 0.9575 15 6 3.0718 -3.3405 1.0896 16 6 1.9317 -3.3589 0.2786 17 6 1.0766 -4.4461 0.2992 18 6 1.3311 -5.5179 1.1263 19 6 2.4699 -5.5147 1.9534 20 6 2.7343 -6.6139 2.8034 21 1 2.4203 -7.6065 2.5160 22 6 3.4029 -6.4153 4.0166 23 7 3.6314 -5.2010 4.4464 24 14 3.9690 -7.8841 5.0223 25 1 5.3446 -8.2645 4.6120 26 1 3.9630 -7.5286 6.4642 27 1 3.0494 -9.0268 4.7904 28 6 3.3430 -4.4139 1.9299 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5140 -0.8899 33 1 1.9246 1.8686 0.9965 34 1 3.0931 1.4555 -0.2811 35 1 1.4656 2.0309 -0.7155 36 1 0.6770 0.3691 2.5121 37 1 2.0070 -0.4308 3.3837 38 1 2.3208 1.0486 2.4449 39 1 5.0399 0.1592 0.2414 40 1 3.8070 1.1438 1.0653 41 1 1.7204 -2.5215 -0.3699 42 1 0.2013 -4.4524 -0.3335 43 1 0.6566 -6.3612 1.1399 44 1 4.0952 -5.0633 5.2871 45 1 4.2197 -4.4023 2.5605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071907528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:39 Heat of formation + Delta-G solvation = -164.314167 kcal Electronic energy + Delta-G solvation = -32500.553164 eV Core-core repulsion = 27875.054653 eV Total energy + Delta-G solvation = -4625.498511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.150 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.74109 -47.34378 -47.08338 -40.17718 -37.59674 -37.03947 -33.82745 -33.74624 -31.10458 -29.76983 -29.50647 -28.46362 -27.29916 -25.42012 -24.10956 -23.70711 -21.68618 -21.02329 -20.03724 -18.84506 -18.19687 -18.09380 -17.71120 -17.13343 -16.15646 -15.93217 -15.23589 -15.10427 -14.79686 -14.39094 -14.22433 -14.17889 -14.03600 -13.68181 -13.67173 -13.35641 -13.32377 -13.24711 -13.11370 -12.97550 -12.63811 -12.42369 -12.29558 -12.08092 -11.96525 -11.75303 -11.65001 -11.35726 -11.20346 -11.15659 -10.91502 -10.83753 -10.61501 -10.51377 -10.33373 -10.08969 -9.74054 -9.30451 -9.09667 -8.58894 -7.65878 -7.47745 -6.77206 -4.47568 2.25427 2.76642 2.81585 3.07283 3.09570 3.11008 3.18391 3.51667 3.91622 4.08852 4.23899 4.50720 4.55730 4.74615 4.83013 4.90509 5.04525 5.21746 5.32238 5.36103 5.44835 5.52150 5.56716 5.60819 5.71524 5.80795 5.84034 5.99178 6.03962 6.08845 6.13592 6.25626 6.30668 6.46162 6.61587 6.69022 6.94063 6.97273 7.17900 7.33176 7.53230 7.67031 7.76934 7.92464 8.11725 8.45979 8.64853 8.78073 8.80249 10.17352 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011415 B = 0.004684 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.286785 B = 5976.342661 C = 7540.929772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.168 4.168 4 C 0.123 3.877 5 H 0.131 0.869 6 C -0.167 4.167 7 N -0.605 5.605 8 C 0.065 3.935 9 C 0.427 3.573 10 F -0.159 7.159 11 F -0.193 7.193 12 F -0.181 7.181 13 C 0.567 3.433 14 O -0.522 6.522 15 C -0.120 4.120 16 C -0.217 4.217 17 C -0.099 4.099 18 C -0.206 4.206 19 C 0.104 3.896 20 C -0.461 4.461 21 H 0.080 0.920 22 C 0.072 3.928 23 N -0.799 5.799 24 Si 0.914 3.086 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.262 1.262 28 C -0.092 4.092 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.282 0.718 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.026 13.274 -4.899 14.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.224 4.224 4 C 0.021 3.979 5 H 0.148 0.852 6 C -0.225 4.225 7 N -0.338 5.338 8 C -0.061 4.061 9 C 0.371 3.629 10 F -0.140 7.140 11 F -0.175 7.175 12 F -0.163 7.163 13 C 0.358 3.642 14 O -0.397 6.397 15 C -0.123 4.123 16 C -0.237 4.237 17 C -0.117 4.117 18 C -0.226 4.226 19 C 0.101 3.899 20 C -0.491 4.491 21 H 0.098 0.902 22 C -0.145 4.145 23 N -0.425 5.425 24 Si 0.738 3.262 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.186 1.186 28 C -0.112 4.112 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.151 0.849 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.093 0.907 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.244 13.272 -4.708 14.451 hybrid contribution 0.429 -0.434 0.807 1.012 sum -2.815 12.837 -3.901 13.709 Atomic orbital electron populations 1.21846 0.94214 1.02563 1.01698 1.21505 0.96451 0.96071 0.98630 1.22327 1.01026 0.96594 1.02465 1.21795 0.79361 1.02672 0.94098 0.85202 1.22345 1.01847 0.99896 0.98368 1.47907 1.06754 1.04255 1.74912 1.22934 0.94601 0.94311 0.94237 1.21425 0.80121 0.73900 0.87485 1.93352 1.72026 1.51955 1.96648 1.93139 1.77655 1.49761 1.96934 1.93179 1.71365 1.96081 1.55673 1.19187 0.88399 0.82560 0.74044 1.90780 1.15711 1.85299 1.47890 1.19321 0.96193 0.94464 1.02371 1.20451 0.97653 1.00023 1.05534 1.20448 0.98116 0.94352 0.98792 1.21181 0.98757 0.99060 1.03602 1.17575 0.89311 0.92461 0.90517 1.19577 1.32478 0.95166 1.01838 0.90162 1.25910 0.93501 0.96980 0.98128 1.69732 1.31040 1.21832 1.19850 0.86219 0.79976 0.81465 0.78534 1.19245 1.20238 1.18618 1.21517 0.99640 0.92523 0.97522 0.92324 0.92652 0.91862 0.90516 0.91591 0.92250 0.92363 0.91154 0.91435 0.92588 0.87330 0.84913 0.88337 0.88771 0.88532 0.90657 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.95 37.16 0.33 -1.04 16 2 C -0.11 -1.15 2.26 -90.62 -0.20 -1.36 16 3 C -0.17 -1.47 7.59 37.15 0.28 -1.18 16 4 C 0.12 1.71 1.76 -67.92 -0.12 1.59 16 5 H 0.13 2.12 4.41 -51.93 -0.23 1.90 16 6 C -0.17 -2.08 7.20 37.16 0.27 -1.82 16 7 N -0.60 -9.83 2.30 -167.20 -0.39 -10.21 16 8 C 0.06 0.89 3.80 -4.05 -0.02 0.87 16 9 C 0.43 6.87 3.22 37.16 0.12 6.99 16 10 F -0.16 -3.20 14.06 2.25 0.03 -3.17 16 11 F -0.19 -2.78 17.32 2.25 0.04 -2.74 16 12 F -0.18 -3.07 15.04 2.25 0.03 -3.04 16 13 C 0.57 11.96 6.88 -12.31 -0.08 11.87 16 14 O -0.52 -12.44 14.13 5.32 0.08 -12.36 16 15 C -0.12 -2.72 5.00 -105.04 -0.53 -3.24 16 16 C -0.22 -4.30 7.33 -38.92 -0.29 -4.59 16 17 C -0.10 -1.98 10.01 -39.73 -0.40 -2.38 16 18 C -0.21 -4.69 9.78 -38.81 -0.38 -5.07 16 19 C 0.10 2.66 5.53 -106.87 -0.59 2.07 16 20 C -0.46 -11.90 9.06 -37.73 -0.34 -12.25 16 21 H 0.08 1.98 7.86 -52.49 -0.41 1.56 16 22 C 0.07 1.80 5.28 -17.35 -0.09 1.71 16 23 N -0.80 -20.81 10.86 55.55 0.60 -20.20 16 24 Si 0.91 18.81 29.57 -169.99 -5.03 13.78 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 27 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 28 C -0.09 -2.38 8.30 -38.44 -0.32 -2.69 16 29 H 0.06 0.51 6.63 -51.93 -0.34 0.17 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.90 7.37 -51.93 -0.38 0.52 16 33 H 0.07 0.55 5.38 -51.93 -0.28 0.27 16 34 H 0.06 0.51 5.68 -51.93 -0.30 0.21 16 35 H 0.06 0.44 8.04 -51.93 -0.42 0.03 16 36 H 0.07 0.73 6.52 -51.92 -0.34 0.40 16 37 H 0.07 1.01 7.69 -51.93 -0.40 0.61 16 38 H 0.06 0.62 4.79 -51.93 -0.25 0.37 16 39 H 0.11 1.41 8.10 -51.93 -0.42 0.99 16 40 H 0.13 1.37 3.61 -51.93 -0.19 1.19 16 41 H 0.10 1.67 5.67 -52.49 -0.30 1.37 16 42 H 0.09 1.59 8.06 -52.48 -0.42 1.17 16 43 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 44 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 45 H 0.13 3.63 6.28 -52.48 -0.33 3.30 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -28.82 355.28 -7.04 -35.86 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.41 Total: 7.25 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.35 Total: -10.53 kcal Atomic # 7 Polarization: -30.63 SS G_CDS: 0.22 Total: -30.42 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 9 Polarization: -9.05 SS G_CDS: 0.10 Total: -8.95 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.82 -7.04 -35.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071907528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.455 kcal (2) G-P(sol) polarization free energy of solvation -28.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds