Wall clock time and date at job start Tue Mar 31 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47114 * 2 1 4 4 C 1.53005 * 109.46908 * 119.99746 * 2 1 3 5 5 H 1.09002 * 109.47454 * 50.23297 * 4 2 1 6 6 C 1.53002 * 109.47134 * 290.23027 * 4 2 1 7 7 N 1.46505 * 109.47131 * 170.23235 * 4 2 1 8 8 C 1.46494 * 119.99666 * 65.03485 * 7 4 2 9 9 C 1.52995 * 109.47350 * 113.07500 * 8 7 4 10 10 F 1.39898 * 109.47308 * 65.98393 * 9 8 7 11 11 F 1.39901 * 109.47677 * 185.98687 * 9 8 7 12 12 F 1.39903 * 109.46832 * 305.98434 * 9 8 7 13 13 C 1.34774 * 119.99884 * 245.03488 * 7 4 2 14 14 O 1.21549 * 119.99571 * 179.60477 * 13 7 4 15 15 C 1.47881 * 120.00232 * 359.60364 * 13 7 4 16 16 C 1.39927 * 120.02431 * 47.72352 * 15 13 7 17 17 C 1.38328 * 120.35591 * 179.71619 * 16 15 13 18 18 C 1.37754 * 120.41462 * 0.55750 * 17 16 15 19 19 C 1.40754 * 120.03676 * 359.72080 * 18 17 16 20 20 C 1.41435 * 120.17538 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99860 * 30.51650 * 20 19 18 22 22 C 1.39936 * 119.99997 * 210.50841 * 20 19 18 23 23 N 1.30825 * 120.00032 * 8.75443 * 22 20 19 24 24 Si 1.86796 * 119.99915 * 188.75493 * 22 20 19 25 25 H 1.48502 * 109.47543 * 89.99941 * 24 22 20 26 26 H 1.48506 * 109.47129 * 209.99770 * 24 22 20 27 27 H 1.48502 * 109.47207 * 329.99847 * 24 22 20 28 28 C 1.38990 * 120.02649 * 227.99498 * 15 13 7 29 29 H 1.08998 * 109.47451 * 300.00273 * 1 2 3 30 30 H 1.08993 * 109.47283 * 60.00346 * 1 2 3 31 31 H 1.09006 * 109.46965 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47422 * 239.99202 * 2 1 3 33 33 H 1.08996 * 109.47305 * 75.87108 * 3 2 1 34 34 H 1.09004 * 109.47299 * 195.87151 * 3 2 1 35 35 H 1.09003 * 109.47055 * 315.87393 * 3 2 1 36 36 H 1.09010 * 109.46936 * 54.09649 * 6 4 2 37 37 H 1.08999 * 109.47094 * 174.09013 * 6 4 2 38 38 H 1.08996 * 109.47186 * 294.09490 * 6 4 2 39 39 H 1.09006 * 109.47237 * 233.07209 * 8 7 4 40 40 H 1.09003 * 109.47268 * 353.07275 * 8 7 4 41 41 H 1.07999 * 119.81693 * 359.97124 * 16 15 13 42 42 H 1.08004 * 119.79222 * 180.25010 * 17 16 15 43 43 H 1.07997 * 119.98454 * 179.73842 * 18 17 16 44 44 H 0.97001 * 120.00013 * 180.02562 * 23 22 20 45 45 H 1.08003 * 120.20327 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5413 -1.6862 1.3409 6 6 1.7396 0.1275 2.4865 7 7 3.4861 -0.9275 1.1380 8 6 4.3906 0.2246 1.1146 9 6 5.2434 0.2294 2.3848 10 9 6.0921 -0.8828 2.3810 11 9 6.0087 1.3997 2.4284 12 9 4.4093 0.1757 3.5067 13 6 3.9843 -2.1772 1.0571 14 8 5.1836 -2.3481 0.9575 15 6 3.0718 -3.3405 1.0896 16 6 1.9317 -3.3589 0.2786 17 6 1.0766 -4.4461 0.2992 18 6 1.3311 -5.5179 1.1263 19 6 2.4699 -5.5147 1.9534 20 6 2.7343 -6.6139 2.8034 21 1 2.4203 -7.6065 2.5160 22 6 3.4029 -6.4153 4.0166 23 7 3.6314 -5.2010 4.4464 24 14 3.9690 -7.8841 5.0223 25 1 5.3446 -8.2645 4.6120 26 1 3.9630 -7.5286 6.4642 27 1 3.0494 -9.0268 4.7904 28 6 3.3430 -4.4139 1.9299 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5140 -0.8899 33 1 1.9246 1.8686 0.9965 34 1 3.0931 1.4555 -0.2811 35 1 1.4656 2.0309 -0.7155 36 1 0.6770 0.3691 2.5121 37 1 2.0070 -0.4308 3.3837 38 1 2.3208 1.0486 2.4449 39 1 5.0399 0.1592 0.2414 40 1 3.8070 1.1438 1.0653 41 1 1.7204 -2.5215 -0.3699 42 1 0.2013 -4.4524 -0.3335 43 1 0.6566 -6.3612 1.1399 44 1 4.0952 -5.0633 5.2871 45 1 4.2197 -4.4023 2.5605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071907528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:38 Heat of formation + Delta-G solvation = -178.923858 kcal Electronic energy + Delta-G solvation = -32501.186688 eV Core-core repulsion = 27875.054653 eV Total energy + Delta-G solvation = -4626.132035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.150 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -51.07192 -48.62585 -48.51711 -41.60677 -39.09394 -38.60301 -35.57128 -35.00508 -32.64761 -31.37632 -30.94724 -29.73241 -28.06812 -27.24558 -25.27421 -25.10065 -23.19506 -22.79022 -21.25710 -20.20726 -19.62768 -19.37346 -19.25310 -18.53992 -17.67993 -17.37019 -16.79723 -16.62020 -16.15381 -15.83108 -15.56431 -15.47489 -15.38785 -15.01193 -14.97495 -14.80464 -14.70956 -14.67033 -14.58946 -14.27286 -13.88286 -13.74530 -13.57309 -13.45949 -13.13408 -12.95410 -12.91544 -12.85518 -12.75392 -12.44240 -12.21067 -12.15197 -11.98846 -11.75358 -11.56671 -11.47205 -11.35992 -11.11748 -10.76620 -9.93029 -9.43221 -9.29470 -8.61519 -6.41464 0.50016 0.99904 1.35501 1.43969 1.46876 1.49330 1.83187 1.93675 2.18888 2.73593 2.83127 3.01860 3.23974 3.60884 3.64652 3.78163 3.92933 4.00574 4.17776 4.23927 4.39253 4.43184 4.46670 4.54338 4.64483 4.83748 4.90900 4.92041 4.98378 5.06469 5.09176 5.12480 5.18485 5.19153 5.30119 5.32568 5.40281 5.51024 5.51907 5.63799 5.83760 5.93477 6.03341 6.16632 6.30032 6.59259 6.89566 6.93549 7.05755 8.34251 Molecular weight = 343.15amu Principal moments of inertia in cm(-1) A = 0.011415 B = 0.004684 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.286785 B = 5976.342661 C = 7540.929772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 C -0.169 4.169 4 C 0.117 3.883 5 H 0.104 0.896 6 C -0.163 4.163 7 N -0.593 5.593 8 C 0.067 3.933 9 C 0.420 3.580 10 F -0.188 7.188 11 F -0.181 7.181 12 F -0.189 7.189 13 C 0.560 3.440 14 O -0.559 6.559 15 C -0.129 4.129 16 C -0.189 4.189 17 C -0.094 4.094 18 C -0.210 4.210 19 C 0.072 3.928 20 C -0.498 4.498 21 H 0.082 0.918 22 C 0.028 3.972 23 N -0.838 5.838 24 Si 0.982 3.018 25 H -0.269 1.269 26 H -0.271 1.271 27 H -0.251 1.251 28 C -0.127 4.127 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.175 0.825 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.109 0.891 44 H 0.282 0.718 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.183 15.488 -6.697 17.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.225 4.225 4 C 0.015 3.985 5 H 0.121 0.879 6 C -0.220 4.220 7 N -0.325 5.325 8 C -0.057 4.057 9 C 0.364 3.636 10 F -0.169 7.169 11 F -0.162 7.162 12 F -0.171 7.171 13 C 0.351 3.649 14 O -0.438 6.438 15 C -0.132 4.132 16 C -0.208 4.208 17 C -0.112 4.112 18 C -0.229 4.229 19 C 0.070 3.930 20 C -0.528 4.528 21 H 0.100 0.900 22 C -0.185 4.185 23 N -0.465 5.465 24 Si 0.803 3.197 25 H -0.194 1.194 26 H -0.195 1.195 27 H -0.174 1.174 28 C -0.147 4.147 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.139 0.861 40 H 0.192 0.808 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.127 0.873 44 H 0.093 0.907 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.448 15.520 -6.519 17.693 hybrid contribution 1.005 -0.942 1.236 1.851 sum -4.443 14.579 -5.282 16.130 Atomic orbital electron populations 1.21855 0.92801 1.02418 1.03104 1.21449 0.97474 0.96985 0.96039 1.22335 1.01449 0.95114 1.03634 1.21987 0.77489 1.02216 0.96789 0.87877 1.22325 1.03844 0.99801 0.96070 1.47850 1.08275 1.03404 1.73000 1.23297 0.94601 0.94605 0.93206 1.21849 0.80095 0.73393 0.88218 1.93300 1.73055 1.53789 1.96802 1.93159 1.77439 1.48699 1.96920 1.93167 1.71445 1.96099 1.56349 1.19066 0.87633 0.83920 0.74249 1.90756 1.16958 1.86158 1.49904 1.19597 0.97357 0.94368 1.01846 1.20867 0.95581 1.00670 1.03723 1.20912 0.99247 0.92957 0.98119 1.21455 0.97917 1.00417 1.03137 1.17895 0.90588 0.92787 0.91774 1.19839 1.34560 0.95468 1.02951 0.90023 1.26756 0.93159 0.99565 0.98978 1.69854 1.32483 1.23861 1.20351 0.85196 0.79293 0.78203 0.77010 1.19380 1.19542 1.17383 1.21256 0.99391 0.94721 0.99347 0.91431 0.90795 0.92829 0.91129 0.90801 0.91953 0.90350 0.88560 0.94733 0.90746 0.86093 0.80850 0.84693 0.84210 0.87279 0.90733 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.95 71.98 0.64 -1.44 16 2 C -0.10 -1.76 2.26 -10.79 -0.02 -1.78 16 3 C -0.17 -2.12 7.59 71.98 0.55 -1.58 16 4 C 0.12 2.98 1.76 44.99 0.08 3.06 16 5 H 0.10 3.22 4.41 -2.39 -0.01 3.21 16 6 C -0.16 -3.72 7.20 71.98 0.52 -3.20 16 7 N -0.59 -18.69 2.30 -801.17 -1.85 -20.54 16 8 C 0.07 1.72 3.80 86.38 0.33 2.05 16 9 C 0.42 13.37 3.22 71.98 0.23 13.61 16 10 F -0.19 -7.88 14.06 44.97 0.63 -7.25 16 11 F -0.18 -4.96 17.32 44.97 0.78 -4.18 16 12 F -0.19 -6.41 15.04 44.97 0.68 -5.74 16 13 C 0.56 24.13 6.88 86.80 0.60 24.72 16 14 O -0.56 -27.78 14.13 -3.87 -0.05 -27.83 16 15 C -0.13 -5.95 5.00 -20.13 -0.10 -6.05 16 16 C -0.19 -7.19 7.33 22.70 0.17 -7.02 16 17 C -0.09 -3.58 10.01 22.18 0.22 -3.36 16 18 C -0.21 -9.52 9.78 22.77 0.22 -9.29 16 19 C 0.07 3.84 5.53 -21.32 -0.12 3.73 16 20 C -0.50 -27.09 9.06 23.47 0.21 -26.88 16 21 H 0.08 4.21 7.86 -2.91 -0.02 4.19 16 22 C 0.03 1.49 5.28 85.25 0.45 1.94 16 23 N -0.84 -46.78 10.86 21.82 0.24 -46.54 16 24 Si 0.98 40.27 29.57 68.60 2.03 42.30 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 27 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 28 C -0.13 -6.95 8.30 23.01 0.19 -6.76 16 29 H 0.07 0.87 6.63 -2.39 -0.02 0.85 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.07 1.37 7.37 -2.39 -0.02 1.35 16 33 H 0.07 0.84 5.38 -2.39 -0.01 0.83 16 34 H 0.06 0.76 5.68 -2.39 -0.01 0.75 16 35 H 0.08 0.75 8.04 -2.39 -0.02 0.73 16 36 H 0.10 1.69 6.52 -2.38 -0.02 1.68 16 37 H 0.03 1.02 7.69 -2.39 -0.02 1.00 16 38 H 0.07 1.41 4.79 -2.39 -0.01 1.39 16 39 H 0.12 2.88 8.10 -2.38 -0.02 2.86 16 40 H 0.17 2.94 3.61 -2.39 -0.01 2.93 16 41 H 0.14 4.12 5.67 -2.91 -0.02 4.11 16 42 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 43 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 44 H 0.28 14.66 8.30 -92.71 -0.77 13.89 16 45 H 0.09 5.51 6.28 -2.91 -0.02 5.49 16 Total: -1.00 -69.32 355.28 7.66 -61.66 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 1.05 Total: 26.38 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 4.17 Total: -18.25 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -1.61 Total: -67.08 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.05 Total: -27.83 kcal Atomic # 9 Polarization: -19.25 SS G_CDS: 2.09 Total: -17.17 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -69.32 7.66 -61.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071907528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.266 kcal (2) G-P(sol) polarization free energy of solvation -69.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds