Wall clock time and date at job start Tue Mar 31 2020 06:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00260 * 2 1 4 4 C 1.50695 * 109.47388 * 89.99680 * 3 2 1 5 5 H 1.08005 * 119.99755 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99863 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00647 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99846 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47347 * 60.00021 * 8 6 4 10 10 H 1.48497 * 109.47250 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47122 * 300.00423 * 8 6 4 12 12 C 1.34788 * 119.99789 * 179.97438 * 2 1 3 13 13 O 1.21551 * 119.99585 * 186.99131 * 12 2 1 14 14 C 1.47848 * 119.99811 * 6.99098 * 12 2 1 15 15 C 1.39588 * 120.14264 * 20.28909 * 14 12 2 16 16 C 1.37938 * 119.84948 * 179.78748 * 15 14 12 17 17 C 1.38379 * 120.14527 * 0.48843 * 16 15 14 18 18 C 1.38337 * 120.29135 * 359.74329 * 17 16 15 19 19 C 1.50704 * 119.92551 * 180.02562 * 18 17 16 20 20 O 1.42900 * 109.46830 * 270.01610 * 19 18 17 21 21 C 1.35900 * 116.99953 * 180.02562 * 20 19 18 22 22 C 1.38764 * 120.04086 * 359.72223 * 21 20 19 23 23 C 1.38134 * 119.99124 * 179.74741 * 22 21 20 24 24 C 1.38248 * 120.08096 * 0.53324 * 23 22 21 25 25 C 1.38468 * 120.08729 * 359.74429 * 24 23 22 26 26 F 1.35098 * 120.00098 * 179.97438 * 25 24 23 27 27 C 1.38384 * 120.00303 * 359.97438 * 25 24 23 28 28 C 1.37977 * 120.14715 * 0.02562 * 18 17 16 29 29 H 1.09000 * 109.47392 * 85.96973 * 1 2 3 30 30 H 1.09003 * 109.47473 * 205.97027 * 1 2 3 31 31 H 1.09000 * 109.47039 * 325.97052 * 1 2 3 32 32 H 1.09000 * 109.46917 * 329.99487 * 3 2 1 33 33 H 1.08997 * 109.47005 * 210.00323 * 3 2 1 34 34 H 0.97000 * 120.00378 * 179.97438 * 7 6 4 35 35 H 1.08002 * 120.08015 * 359.97438 * 15 14 12 36 36 H 1.08003 * 119.92912 * 180.21120 * 16 15 14 37 37 H 1.07998 * 119.85685 * 179.76454 * 17 16 15 38 38 H 1.08993 * 109.47252 * 30.01738 * 19 18 17 39 39 H 1.08998 * 109.46725 * 150.02107 * 19 18 17 40 40 H 1.07997 * 120.00544 * 0.02562 * 22 21 20 41 41 H 1.08011 * 119.95728 * 180.27758 * 23 22 21 42 42 H 1.08007 * 119.95851 * 179.76533 * 24 23 22 43 43 H 1.08005 * 120.04359 * 180.02562 * 27 25 24 44 44 H 1.07998 * 120.07894 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 1 2.0980 1.0958 2.2417 6 6 3.1269 2.8774 1.6726 7 7 3.5543 3.6175 0.6731 8 14 3.4389 3.4164 3.4338 9 1 4.2412 2.3812 4.1336 10 1 4.1813 4.7025 3.4338 11 1 2.1415 3.5944 4.1342 12 6 2.1389 -1.1673 0.0005 13 8 3.3476 -1.1711 0.1287 14 6 1.4078 -2.4430 -0.1548 15 6 0.1284 -2.4542 -0.7130 16 6 -0.5464 -3.6483 -0.8591 17 6 0.0380 -4.8321 -0.4443 18 6 1.3037 -4.8273 0.1141 19 6 1.9325 -6.1214 0.5624 20 8 1.5905 -6.3693 1.9275 21 6 2.0817 -7.5047 2.4902 22 6 2.8719 -8.3653 1.7417 23 6 3.3749 -9.5164 2.3161 24 6 3.0830 -9.8181 3.6334 25 6 2.2901 -8.9646 4.3817 26 9 2.0055 -9.2613 5.6686 27 6 1.7890 -7.8075 3.8115 28 6 1.9915 -3.6403 0.2615 29 1 -0.3634 0.0722 -1.0251 30 1 -0.3634 -0.9239 0.4500 31 1 -0.3633 0.8517 0.5751 32 1 1.6085 2.0283 -0.5139 33 1 3.1499 1.1383 -0.5139 34 1 4.0312 4.4434 0.8503 35 1 -0.3308 -1.5305 -1.0326 36 1 -1.5350 -3.6589 -1.2940 37 1 -0.4961 -5.7639 -0.5574 38 1 1.5649 -6.9383 -0.0584 39 1 3.0160 -6.0512 0.4663 40 1 3.0973 -8.1330 0.7113 41 1 3.9936 -10.1837 1.7343 42 1 3.4742 -10.7206 4.0794 43 1 1.1708 -7.1410 4.3947 44 1 2.9797 -3.6379 0.6973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071907590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:17 Heat of formation + Delta-G solvation = -40.170323 kcal Electronic energy + Delta-G solvation = -28001.932706 eV Core-core repulsion = 23800.213911 eV Total energy + Delta-G solvation = -4201.718795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.137 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.23631 -40.60860 -39.94252 -38.21460 -37.33085 -35.09463 -33.04476 -32.24575 -31.10871 -31.05194 -30.02820 -28.08757 -26.65287 -26.14387 -23.96899 -23.32590 -22.75893 -22.09984 -21.46037 -19.06671 -18.92550 -17.18040 -16.66068 -16.58783 -16.47842 -16.38814 -16.34156 -16.16785 -15.86204 -15.36921 -14.85949 -14.70651 -14.38603 -14.18162 -14.13995 -13.90863 -13.34250 -13.02260 -12.91249 -12.79663 -12.62731 -12.42047 -12.25949 -12.12717 -11.93170 -11.51594 -11.37825 -11.23355 -11.17177 -10.93646 -10.75018 -10.56173 -10.17028 -9.67902 -9.26095 -9.12061 -8.98342 -8.82866 -8.66357 -8.44077 -7.71556 -6.05200 -4.09821 0.75175 0.90671 0.92285 1.19580 2.73934 3.21617 3.32034 3.33495 3.36785 3.41375 3.79914 4.00179 4.09934 4.28925 4.44342 4.51563 4.56851 4.59342 4.65118 4.80444 4.86365 4.92840 4.99775 5.04315 5.11761 5.24034 5.29541 5.46618 5.56256 5.58248 5.70587 5.74013 5.77030 5.83573 5.90397 5.93641 6.15810 6.26979 6.33302 6.33937 6.37385 6.78581 6.99374 7.02274 7.37815 7.47664 7.90618 8.20821 8.32056 8.86217 9.01207 9.55119 11.02922 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011618 B = 0.002279 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.550070 B =12283.315018 C =13837.727726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.594 5.594 3 C 0.246 3.754 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.542 3.458 13 O -0.533 6.533 14 C -0.121 4.121 15 C -0.098 4.098 16 C -0.135 4.135 17 C -0.080 4.080 18 C -0.114 4.114 19 C 0.105 3.895 20 O -0.302 6.302 21 C 0.165 3.835 22 C -0.222 4.222 23 C -0.050 4.050 24 C -0.196 4.196 25 C 0.139 3.861 26 F -0.135 7.135 27 C -0.192 4.192 28 C -0.039 4.039 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.155 0.845 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.144 0.856 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 -25.893 -2.004 27.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.325 5.325 3 C 0.128 3.872 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.329 3.671 13 O -0.411 6.411 14 C -0.124 4.124 15 C -0.116 4.116 16 C -0.153 4.153 17 C -0.098 4.098 18 C -0.115 4.115 19 C 0.031 3.969 20 O -0.215 6.215 21 C 0.118 3.882 22 C -0.240 4.240 23 C -0.068 4.068 24 C -0.215 4.215 25 C 0.119 3.881 26 F -0.113 7.113 27 C -0.211 4.211 28 C -0.058 4.058 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.172 0.828 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.162 0.838 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.482 -25.511 -1.857 26.651 hybrid contribution 0.172 0.293 1.076 1.129 sum -7.311 -25.218 -0.781 26.268 Atomic orbital electron populations 1.22256 0.81827 1.03129 1.00185 1.48062 1.06100 1.07686 1.70682 1.19332 0.92420 0.77773 0.97716 1.21377 1.36647 1.06254 0.92211 0.92450 1.24929 0.95294 0.96352 0.97502 1.69914 1.38350 1.14390 1.30812 0.86547 0.78402 0.77809 0.84619 1.20122 1.21154 1.20233 1.18168 0.87237 0.83304 0.78363 1.90757 1.13925 1.86813 1.49581 1.20283 0.95368 0.94596 1.02189 1.22481 0.93471 0.99829 0.95830 1.21107 1.00519 0.92081 1.01549 1.21153 0.93671 0.98550 0.96473 1.19280 0.95911 0.93339 1.02923 1.21654 0.99956 0.95167 0.80138 1.86210 1.69724 1.37794 1.27819 1.18646 0.91969 0.85828 0.91712 1.21375 1.03876 0.97337 1.01461 1.20791 0.96593 0.95597 0.93796 1.21045 1.03291 1.01691 0.95512 1.17292 0.97387 0.94410 0.78969 1.91521 1.91909 1.93024 1.34873 1.20303 1.07307 0.99007 0.94477 1.21173 0.99744 0.90267 0.94637 0.93031 0.90911 0.90763 0.94714 0.93837 0.92633 0.82792 0.85304 0.85814 0.90719 0.90522 0.84605 0.84631 0.84645 0.83802 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 8.65 59.84 0.52 1.60 16 2 N -0.59 -12.71 2.86 -184.08 -0.53 -13.24 16 3 C 0.25 6.45 5.13 -5.20 -0.03 6.42 16 4 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.54 11.69 7.51 -12.32 -0.09 11.60 16 13 O -0.53 -13.76 16.19 5.32 0.09 -13.67 16 14 C -0.12 -1.99 5.57 -104.97 -0.58 -2.57 16 15 C -0.10 -1.25 7.61 -39.19 -0.30 -1.55 16 16 C -0.13 -1.37 10.03 -39.64 -0.40 -1.77 16 17 C -0.08 -0.81 9.69 -39.49 -0.38 -1.19 16 18 C -0.11 -1.34 5.50 -104.68 -0.58 -1.91 16 19 C 0.11 0.99 4.86 36.01 0.17 1.17 16 20 O -0.30 -3.46 10.12 -19.42 -0.20 -3.65 16 21 C 0.16 1.70 6.68 -39.23 -0.26 1.43 16 22 C -0.22 -1.80 9.04 -39.42 -0.36 -2.16 16 23 C -0.05 -0.35 10.04 -39.62 -0.40 -0.75 16 24 C -0.20 -1.57 10.02 -39.49 -0.40 -1.96 16 25 C 0.14 1.37 7.30 -39.44 -0.29 1.08 16 26 F -0.13 -1.42 17.27 2.25 0.04 -1.38 16 27 C -0.19 -2.00 9.97 -39.37 -0.39 -2.39 16 28 C -0.04 -0.59 9.24 -39.19 -0.36 -0.95 16 29 H 0.05 0.65 7.03 -51.93 -0.36 0.29 16 30 H 0.07 0.98 5.22 -51.93 -0.27 0.71 16 31 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 32 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.04 1.28 7.53 -51.93 -0.39 0.89 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.15 1.76 4.04 -52.49 -0.21 1.54 16 36 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.07 0.51 7.59 -51.93 -0.39 0.12 16 39 H 0.08 0.66 7.61 -51.93 -0.40 0.26 16 40 H 0.14 0.84 6.30 -52.49 -0.33 0.51 16 41 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 42 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.14 1.45 8.06 -52.48 -0.42 1.02 16 44 H 0.14 2.12 7.79 -52.49 -0.41 1.71 16 LS Contribution 377.95 15.07 5.70 5.70 Total: -1.00 -34.63 377.95 -8.99 -43.62 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -5.27 Total: -0.92 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -4.54 Total: -7.62 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.21 Total: -39.14 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.11 Total: -17.32 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.63 -8.99 -43.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071907590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.449 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds