Wall clock time and date at job start Tue Mar 31 2020 06:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00260 * 2 1 4 4 C 1.50695 * 109.47388 * 89.99680 * 3 2 1 5 5 H 1.08005 * 119.99755 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99863 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00647 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99846 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47347 * 60.00021 * 8 6 4 10 10 H 1.48497 * 109.47250 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47122 * 300.00423 * 8 6 4 12 12 C 1.34788 * 119.99789 * 179.97438 * 2 1 3 13 13 O 1.21551 * 119.99585 * 186.99131 * 12 2 1 14 14 C 1.47848 * 119.99811 * 6.99098 * 12 2 1 15 15 C 1.39588 * 120.14264 * 20.28909 * 14 12 2 16 16 C 1.37938 * 119.84948 * 179.78748 * 15 14 12 17 17 C 1.38379 * 120.14527 * 0.48843 * 16 15 14 18 18 C 1.38337 * 120.29135 * 359.74329 * 17 16 15 19 19 C 1.50704 * 119.92551 * 180.02562 * 18 17 16 20 20 O 1.42900 * 109.46830 * 270.01610 * 19 18 17 21 21 C 1.35900 * 116.99953 * 180.02562 * 20 19 18 22 22 C 1.38764 * 120.04086 * 359.72223 * 21 20 19 23 23 C 1.38134 * 119.99124 * 179.74741 * 22 21 20 24 24 C 1.38248 * 120.08096 * 0.53324 * 23 22 21 25 25 C 1.38468 * 120.08729 * 359.74429 * 24 23 22 26 26 F 1.35098 * 120.00098 * 179.97438 * 25 24 23 27 27 C 1.38384 * 120.00303 * 359.97438 * 25 24 23 28 28 C 1.37977 * 120.14715 * 0.02562 * 18 17 16 29 29 H 1.09000 * 109.47392 * 85.96973 * 1 2 3 30 30 H 1.09003 * 109.47473 * 205.97027 * 1 2 3 31 31 H 1.09000 * 109.47039 * 325.97052 * 1 2 3 32 32 H 1.09000 * 109.46917 * 329.99487 * 3 2 1 33 33 H 1.08997 * 109.47005 * 210.00323 * 3 2 1 34 34 H 0.97000 * 120.00378 * 179.97438 * 7 6 4 35 35 H 1.08002 * 120.08015 * 359.97438 * 15 14 12 36 36 H 1.08003 * 119.92912 * 180.21120 * 16 15 14 37 37 H 1.07998 * 119.85685 * 179.76454 * 17 16 15 38 38 H 1.08993 * 109.47252 * 30.01738 * 19 18 17 39 39 H 1.08998 * 109.46725 * 150.02107 * 19 18 17 40 40 H 1.07997 * 120.00544 * 0.02562 * 22 21 20 41 41 H 1.08011 * 119.95728 * 180.27758 * 23 22 21 42 42 H 1.08007 * 119.95851 * 179.76533 * 24 23 22 43 43 H 1.08005 * 120.04359 * 180.02562 * 27 25 24 44 44 H 1.07998 * 120.07894 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 1 2.0980 1.0958 2.2417 6 6 3.1269 2.8774 1.6726 7 7 3.5543 3.6175 0.6731 8 14 3.4389 3.4164 3.4338 9 1 4.2412 2.3812 4.1336 10 1 4.1813 4.7025 3.4338 11 1 2.1415 3.5944 4.1342 12 6 2.1389 -1.1673 0.0005 13 8 3.3476 -1.1711 0.1287 14 6 1.4078 -2.4430 -0.1548 15 6 0.1284 -2.4542 -0.7130 16 6 -0.5464 -3.6483 -0.8591 17 6 0.0380 -4.8321 -0.4443 18 6 1.3037 -4.8273 0.1141 19 6 1.9325 -6.1214 0.5624 20 8 1.5905 -6.3693 1.9275 21 6 2.0817 -7.5047 2.4902 22 6 2.8719 -8.3653 1.7417 23 6 3.3749 -9.5164 2.3161 24 6 3.0830 -9.8181 3.6334 25 6 2.2901 -8.9646 4.3817 26 9 2.0055 -9.2613 5.6686 27 6 1.7890 -7.8075 3.8115 28 6 1.9915 -3.6403 0.2615 29 1 -0.3634 0.0722 -1.0251 30 1 -0.3634 -0.9239 0.4500 31 1 -0.3633 0.8517 0.5751 32 1 1.6085 2.0283 -0.5139 33 1 3.1499 1.1383 -0.5139 34 1 4.0312 4.4434 0.8503 35 1 -0.3308 -1.5305 -1.0326 36 1 -1.5350 -3.6589 -1.2940 37 1 -0.4961 -5.7639 -0.5574 38 1 1.5649 -6.9383 -0.0584 39 1 3.0160 -6.0512 0.4663 40 1 3.0973 -8.1330 0.7113 41 1 3.9936 -10.1837 1.7343 42 1 3.4742 -10.7206 4.0794 43 1 1.1708 -7.1410 4.3947 44 1 2.9797 -3.6379 0.6973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071907590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:16 Heat of formation + Delta-G solvation = -60.673602 kcal Electronic energy + Delta-G solvation = -28002.821794 eV Core-core repulsion = 23800.213911 eV Total energy + Delta-G solvation = -4202.607884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.99286 -41.54576 -41.04151 -39.41779 -38.13898 -36.83448 -34.93493 -33.43980 -32.17386 -31.78787 -30.72981 -29.81114 -27.96856 -27.30636 -25.68337 -23.99356 -23.61505 -23.48516 -22.38441 -20.51740 -19.63319 -18.75645 -18.21260 -17.66739 -17.44582 -17.27636 -17.11505 -17.02711 -16.97135 -16.61809 -16.25663 -16.12825 -15.68950 -15.34906 -14.96055 -14.72343 -14.49692 -14.45067 -14.24370 -13.84557 -13.77791 -13.60528 -13.40947 -13.31096 -13.05805 -12.91938 -12.72725 -12.60964 -12.41873 -12.26077 -12.04561 -11.94177 -11.82556 -11.71885 -10.77541 -10.67532 -9.98866 -9.93721 -9.87541 -9.48989 -9.34058 -8.25999 -6.40619 -0.12067 0.08787 0.22065 0.26601 1.33542 1.37977 1.45405 1.80694 2.08583 2.29972 2.40145 2.56927 2.90175 3.03319 3.33099 3.55729 3.58624 3.80036 3.86856 3.96972 4.02244 4.07041 4.13086 4.19186 4.26549 4.38315 4.41223 4.44906 4.55080 4.57483 4.76760 4.90522 4.95797 4.97428 4.99003 5.07211 5.14601 5.20033 5.31905 5.36670 5.37502 5.43671 5.50717 5.69448 5.76766 5.90228 6.01517 6.30074 6.62624 6.68880 7.21543 7.36693 8.80917 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011618 B = 0.002279 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.550070 B =12283.315018 C =13837.727726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.602 5.602 3 C 0.260 3.740 4 C -0.545 4.545 5 H 0.048 0.952 6 C 0.010 3.990 7 N -0.926 5.926 8 Si 0.966 3.034 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.260 1.260 12 C 0.532 3.468 13 O -0.597 6.597 14 C -0.150 4.150 15 C -0.096 4.096 16 C -0.120 4.120 17 C -0.065 4.065 18 C -0.113 4.113 19 C 0.103 3.897 20 O -0.325 6.325 21 C 0.147 3.853 22 C -0.218 4.218 23 C -0.044 4.044 24 C -0.194 4.194 25 C 0.120 3.880 26 F -0.145 7.145 27 C -0.212 4.212 28 C -0.060 4.060 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.033 0.967 33 H -0.002 1.002 34 H 0.269 0.731 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.164 0.836 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.159 0.841 41 H 0.171 0.829 42 H 0.156 0.844 43 H 0.134 0.866 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.381 -28.653 -2.684 30.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.332 5.332 3 C 0.139 3.861 4 C -0.584 4.584 5 H 0.066 0.934 6 C -0.190 4.190 7 N -0.565 5.565 8 Si 0.790 3.210 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.184 1.184 12 C 0.322 3.678 13 O -0.479 6.479 14 C -0.153 4.153 15 C -0.114 4.114 16 C -0.138 4.138 17 C -0.083 4.083 18 C -0.113 4.113 19 C 0.029 3.971 20 O -0.239 6.239 21 C 0.101 3.899 22 C -0.237 4.237 23 C -0.062 4.062 24 C -0.212 4.212 25 C 0.100 3.900 26 F -0.123 7.123 27 C -0.231 4.231 28 C -0.079 4.079 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.016 0.984 34 H 0.078 0.922 35 H 0.185 0.815 36 H 0.191 0.809 37 H 0.182 0.818 38 H 0.129 0.871 39 H 0.096 0.904 40 H 0.176 0.824 41 H 0.189 0.811 42 H 0.174 0.826 43 H 0.152 0.848 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.829 -28.280 -2.545 30.048 hybrid contribution 0.858 1.031 1.229 1.820 sum -8.971 -27.249 -1.315 28.718 Atomic orbital electron populations 1.22616 0.78095 1.04231 1.02763 1.48060 1.08454 1.06155 1.70512 1.18814 0.91094 0.80038 0.96132 1.21627 1.37218 1.06561 0.92975 0.93412 1.25829 0.94781 0.96335 1.02024 1.70022 1.38722 1.14797 1.32981 0.85497 0.78896 0.77408 0.79190 1.20674 1.19882 1.18428 1.19089 0.86920 0.84973 0.76768 1.90695 1.16808 1.87915 1.52531 1.19903 0.97196 0.91975 1.06219 1.22610 0.91799 1.01880 0.95135 1.21583 1.01726 0.90658 0.99794 1.21680 0.92524 1.00321 0.93762 1.19505 0.96531 0.92836 1.02435 1.21797 1.00233 0.95103 0.79977 1.86151 1.70302 1.38646 1.28781 1.18794 0.93115 0.86146 0.91848 1.21689 1.02700 0.96986 1.02325 1.21224 0.95955 0.95477 0.93502 1.21376 1.02179 1.01820 0.95870 1.17527 0.98528 0.94984 0.78929 1.91490 1.92155 1.93105 1.35576 1.20377 1.08140 0.99549 0.95077 1.21112 0.99362 0.91513 0.95914 0.89287 0.88331 0.91429 0.94890 0.98405 0.92243 0.81486 0.80943 0.81815 0.87127 0.90380 0.82397 0.81149 0.82601 0.84794 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.95 8.65 127.77 1.11 3.05 16 2 N -0.60 -26.89 2.86 -854.58 -2.44 -29.33 16 3 C 0.26 14.46 5.13 85.63 0.44 14.89 16 4 C -0.55 -32.60 9.39 25.60 0.24 -32.36 16 5 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 6 C 0.01 0.57 5.46 84.65 0.46 1.03 16 7 N -0.93 -56.74 13.29 21.44 0.28 -56.46 16 8 Si 0.97 46.18 29.54 68.60 2.03 48.21 16 9 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 12 C 0.53 24.42 7.51 86.79 0.65 25.07 16 13 O -0.60 -33.67 16.19 -3.88 -0.06 -33.74 16 14 C -0.15 -5.01 5.57 -20.09 -0.11 -5.12 16 15 C -0.10 -2.23 7.61 22.52 0.17 -2.06 16 16 C -0.12 -1.88 10.03 22.23 0.22 -1.65 16 17 C -0.06 -1.02 9.69 22.33 0.22 -0.80 16 18 C -0.11 -2.43 5.50 -19.90 -0.11 -2.54 16 19 C 0.10 1.72 4.86 71.24 0.35 2.07 16 20 O -0.32 -7.12 10.12 -92.42 -0.94 -8.06 16 21 C 0.15 2.89 6.68 22.50 0.15 3.04 16 22 C -0.22 -3.00 9.04 22.37 0.20 -2.79 16 23 C -0.04 -0.48 10.04 22.25 0.22 -0.26 16 24 C -0.19 -2.70 10.02 22.33 0.22 -2.47 16 25 C 0.12 2.32 7.30 22.36 0.16 2.48 16 26 F -0.14 -3.08 17.27 44.97 0.78 -2.31 16 27 C -0.21 -4.49 9.97 22.41 0.22 -4.27 16 28 C -0.06 -1.84 9.24 22.53 0.21 -1.63 16 29 H 0.09 2.05 7.03 -2.39 -0.02 2.03 16 30 H 0.10 2.49 5.22 -2.39 -0.01 2.48 16 31 H 0.07 2.14 8.10 -2.39 -0.02 2.12 16 32 H 0.03 1.81 8.07 -2.39 -0.02 1.79 16 33 H 0.00 -0.14 7.53 -2.39 -0.02 -0.16 16 34 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.17 3.30 4.04 -2.91 -0.01 3.29 16 36 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 37 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 38 H 0.11 1.04 7.59 -2.39 -0.02 1.03 16 39 H 0.08 1.26 7.61 -2.39 -0.02 1.24 16 40 H 0.16 1.39 6.30 -2.91 -0.02 1.37 16 41 H 0.17 0.67 8.06 -2.90 -0.02 0.65 16 42 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 43 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 44 H 0.11 3.78 7.79 -2.91 -0.02 3.75 16 Total: -1.00 -83.32 377.95 5.71 -77.60 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 1.04 Total: 8.40 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 5.03 Total: -4.33 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -2.16 Total: -85.78 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -1.00 Total: -41.79 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -83.32 5.71 -77.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071907590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.930 kcal (2) G-P(sol) polarization free energy of solvation -83.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds