Wall clock time and date at job start Tue Mar 31 2020 07:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47327 * 2 1 4 4 C 1.53005 * 109.46625 * 120.00293 * 2 1 3 5 5 C 1.52997 * 117.50324 * 8.61710 * 4 2 1 6 6 C 1.53003 * 117.49730 * 299.99214 * 4 2 1 7 7 N 1.46494 * 109.47082 * 239.99707 * 2 1 3 8 8 C 1.46500 * 120.00325 * 300.00619 * 7 2 1 9 9 C 1.50701 * 109.47353 * 89.99743 * 8 7 2 10 10 H 1.07995 * 119.99757 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99821 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00198 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99725 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47245 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47173 * 120.00271 * 13 11 9 16 16 H 1.48502 * 109.47316 * 240.00208 * 13 11 9 17 17 C 1.34772 * 119.99953 * 120.00262 * 7 2 1 18 18 O 1.21288 * 120.00405 * 179.97438 * 17 7 2 19 19 C 1.50704 * 120.00070 * 0.02562 * 17 7 2 20 20 C 1.52996 * 109.47258 * 174.06817 * 19 17 7 21 21 H 1.09000 * 109.44338 * 53.90529 * 20 19 17 22 22 C 1.53077 * 109.43844 * 293.98593 * 20 19 17 23 23 C 1.53419 * 108.27889 * 191.68105 * 22 20 19 24 24 O 1.42818 * 108.38757 * 64.73636 * 23 22 20 25 25 C 1.35848 * 117.88148 * 310.93777 * 24 23 22 26 26 C 1.39151 * 118.50135 * 196.93758 * 25 24 23 27 27 C 1.37969 * 120.21409 * 180.21998 * 26 25 24 28 28 C 1.38288 * 119.96132 * 359.97438 * 27 26 25 29 29 C 1.38102 * 119.98295 * 359.91669 * 28 27 26 30 30 C 1.38365 * 121.80786 * 16.99278 * 25 24 23 31 31 H 1.09007 * 109.46950 * 300.00507 * 1 2 3 32 32 H 1.08999 * 109.47327 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46917 * 59.99653 * 1 2 3 34 34 H 1.09005 * 115.54760 * 154.33378 * 4 2 1 35 35 H 1.09008 * 117.49588 * 359.97438 * 5 4 2 36 36 H 1.08990 * 117.50233 * 145.02323 * 5 4 2 37 37 H 1.09003 * 117.50001 * 214.98088 * 6 4 2 38 38 H 1.08996 * 117.50121 * 0.02562 * 6 4 2 39 39 H 1.09004 * 109.47371 * 209.99829 * 8 7 2 40 40 H 1.09001 * 109.46894 * 329.99548 * 8 7 2 41 41 H 0.96998 * 119.99857 * 180.02562 * 12 11 9 42 42 H 1.08999 * 109.46637 * 294.06416 * 19 17 7 43 43 H 1.08999 * 109.47470 * 54.06307 * 19 17 7 44 44 H 1.09000 * 109.69973 * 311.37646 * 22 20 19 45 45 H 1.08996 * 109.70320 * 71.94287 * 22 20 19 46 46 H 1.08998 * 109.68193 * 184.46394 * 23 22 20 47 47 H 1.09002 * 109.67979 * 305.01415 * 23 22 20 48 48 H 1.07994 * 119.89395 * 0.19769 * 26 25 24 49 49 H 1.08000 * 120.01835 * 179.97438 * 27 26 25 50 50 H 1.07999 * 120.01114 * 179.97438 * 28 27 26 51 51 H 1.07996 * 119.84613 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2493 5 6 1.0103 -1.4541 2.1117 6 6 1.6357 -0.1495 2.6096 7 7 2.0183 -0.6906 -1.1961 8 6 1.6643 -2.0932 -1.4280 9 6 0.3829 -2.1639 -2.2179 10 1 -0.1175 -1.2550 -2.5176 11 6 -0.1506 -3.3890 -2.5580 12 7 0.4586 -4.4958 -2.1925 13 14 -1.7386 -3.4766 -3.5377 14 1 -2.2207 -2.1014 -3.8231 15 1 -1.4924 -4.1897 -4.8168 16 1 -2.7649 -4.2085 -2.7526 17 6 2.7932 -0.0357 -2.0832 18 8 3.1979 -0.6076 -3.0733 19 6 3.1578 1.4069 -1.8445 20 6 4.1550 1.8642 -2.9109 21 1 3.7461 1.6613 -3.9008 22 6 5.4713 1.1023 -2.7376 23 6 6.5361 1.7760 -3.6128 24 8 6.7599 3.0956 -3.1144 25 6 5.6746 3.8770 -2.8757 26 6 5.8614 5.2492 -2.7398 27 6 4.7845 6.0754 -2.4923 28 6 3.5146 5.5396 -2.3792 29 6 3.3252 4.1785 -2.5157 30 6 4.4025 3.3442 -2.7649 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 3.0323 -1.1642 1.1643 35 1 -0.0305 -1.4220 1.7893 36 1 1.3250 -2.3794 2.5942 37 1 2.3619 -0.2166 3.4197 38 1 1.0062 0.7403 2.6146 39 1 2.4628 -2.5820 -1.9863 40 1 1.5294 -2.5969 -0.4708 41 1 0.0834 -5.3576 -2.4321 42 1 2.2598 2.0224 -1.8991 43 1 3.6089 1.5092 -0.8575 44 1 5.7799 1.1350 -1.6927 45 1 5.3401 0.0662 -3.0497 46 1 7.4632 1.2046 -3.5682 47 1 6.1853 1.8275 -4.6435 48 1 6.8526 5.6688 -2.8279 49 1 4.9331 7.1399 -2.3869 50 1 2.6711 6.1855 -2.1850 51 1 2.3325 3.7624 -2.4274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071910557.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:40 Heat of formation + Delta-G solvation = -28.474708 kcal Electronic energy + Delta-G solvation = -31056.734223 eV Core-core repulsion = 27114.815988 eV Total energy + Delta-G solvation = -3941.918236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.193 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.88990 -39.41044 -37.66601 -37.51564 -35.14488 -34.31937 -32.59844 -30.72165 -30.30590 -29.49144 -29.36386 -27.10015 -24.55296 -24.11453 -23.67538 -22.80388 -22.07145 -21.74197 -19.94741 -19.71996 -17.94697 -17.84307 -16.94368 -16.57242 -16.40359 -15.80646 -15.71250 -15.19875 -14.81924 -14.78410 -14.37225 -14.25920 -14.12383 -13.68701 -13.37324 -13.22294 -13.09220 -12.65053 -12.55379 -12.36840 -12.26993 -11.80095 -11.75521 -11.54929 -11.47662 -11.31782 -11.16864 -11.03553 -10.87730 -10.86141 -10.65130 -10.62188 -10.55384 -10.26855 -10.21170 -10.02197 -9.68845 -9.44048 -8.98225 -8.74051 -8.42041 -8.18528 -7.65395 -6.03251 -4.06208 1.24833 1.37006 3.27077 3.28391 3.35898 3.37962 3.42708 3.67582 3.80204 4.15032 4.44332 4.58767 4.63753 4.76191 4.82156 4.97817 5.01994 5.12537 5.16846 5.21035 5.24140 5.30632 5.31845 5.34151 5.39340 5.45597 5.48992 5.58335 5.61187 5.77644 5.81636 5.83876 5.85984 5.90989 5.95141 6.15806 6.17613 6.19820 6.27500 6.28373 6.34556 6.43433 6.45165 6.50184 6.51888 6.73200 6.92220 7.14547 7.41963 7.47372 7.57828 7.93809 8.26496 8.44798 8.91975 9.09800 9.57846 11.04870 Molecular weight = 343.19amu Principal moments of inertia in cm(-1) A = 0.011476 B = 0.003306 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.374606 B = 8468.048988 C = 9308.382507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.168 3.832 3 H 0.079 0.921 4 C -0.157 4.157 5 C -0.172 4.172 6 C -0.182 4.182 7 N -0.589 5.589 8 C 0.248 3.752 9 C -0.517 4.517 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.892 3.108 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.506 3.494 18 O -0.541 6.541 19 C -0.133 4.133 20 C -0.029 4.029 21 H 0.095 0.905 22 C -0.156 4.156 23 C 0.063 3.937 24 O -0.320 6.320 25 C 0.135 3.865 26 C -0.153 4.153 27 C -0.093 4.093 28 C -0.154 4.154 29 C -0.084 4.084 30 C -0.148 4.148 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.039 0.961 40 H 0.036 0.964 41 H 0.261 0.739 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.065 0.935 48 H 0.127 0.873 49 H 0.125 0.875 50 H 0.122 0.878 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.379 17.420 5.247 19.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.063 3.937 3 H 0.097 0.903 4 C -0.176 4.176 5 C -0.209 4.209 6 C -0.220 4.220 7 N -0.320 5.320 8 C 0.129 3.871 9 C -0.556 4.556 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.720 3.280 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.211 1.211 17 C 0.292 3.708 18 O -0.419 6.419 19 C -0.173 4.173 20 C -0.048 4.048 21 H 0.113 0.887 22 C -0.193 4.193 23 C -0.012 4.012 24 O -0.235 6.235 25 C 0.089 3.911 26 C -0.172 4.172 27 C -0.111 4.111 28 C -0.173 4.173 29 C -0.102 4.102 30 C -0.149 4.149 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.109 0.891 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.083 0.917 48 H 0.145 0.855 49 H 0.143 0.857 50 H 0.140 0.860 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.770 16.919 4.732 19.210 hybrid contribution -1.189 -0.363 -0.476 1.331 sum 6.582 16.556 4.256 18.318 Atomic orbital electron populations 1.22261 0.94712 1.04428 1.00382 1.20479 0.94724 0.94722 0.83745 0.90290 1.22637 0.99967 1.03944 0.91039 1.23091 0.99537 0.95183 1.03079 1.22944 1.04021 0.98055 0.96987 1.48294 1.48443 1.14789 1.20490 1.19217 0.96142 0.74724 0.97036 1.21460 1.07490 0.92298 1.34325 0.92441 1.24909 0.97540 0.95624 0.96036 1.69940 1.39407 0.97455 1.46578 0.86532 0.83384 0.78023 0.80015 1.19877 1.21001 1.21067 1.20268 0.79091 0.87971 0.83429 1.90640 1.54398 1.68912 1.27948 1.21826 1.00056 0.95419 1.00037 1.19767 0.95606 0.88889 1.00491 0.88738 1.22363 0.94086 1.02193 1.00686 1.23023 1.00581 0.80363 0.97250 1.85949 1.30553 1.26546 1.80406 1.18715 0.85826 0.90239 0.96288 1.20566 0.99996 0.90365 1.06279 1.20883 0.92226 0.99316 0.98648 1.21008 0.97232 0.95126 1.03899 1.21013 0.98319 0.93189 0.97714 1.19935 0.92770 0.96260 1.05936 0.93176 0.89526 0.92643 0.87979 0.87725 0.89276 0.89333 0.89016 0.94310 0.94610 0.92914 0.89111 0.89475 0.91026 0.87768 0.87542 0.91686 0.85537 0.85729 0.86026 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 7.07 37.16 0.26 -2.29 16 2 C 0.17 2.66 2.94 -67.93 -0.20 2.46 16 3 H 0.08 1.06 5.76 -51.93 -0.30 0.76 16 4 C -0.16 -2.32 4.96 -90.62 -0.45 -2.77 16 5 C -0.17 -2.45 9.49 -26.73 -0.25 -2.70 16 6 C -0.18 -2.16 9.90 -26.73 -0.26 -2.43 16 7 N -0.59 -11.78 2.39 -167.47 -0.40 -12.18 16 8 C 0.25 6.19 4.59 -5.19 -0.02 6.17 16 9 C -0.52 -13.99 7.83 -34.44 -0.27 -14.26 16 10 H 0.06 1.56 7.63 -52.49 -0.40 1.16 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 13 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.51 9.86 7.36 -10.99 -0.08 9.78 16 18 O -0.54 -12.61 13.88 5.55 0.08 -12.53 16 19 C -0.13 -1.92 3.21 -27.88 -0.09 -2.01 16 20 C -0.03 -0.41 2.01 -91.70 -0.18 -0.59 16 21 H 0.09 1.48 7.83 -51.93 -0.41 1.08 16 22 C -0.16 -2.12 5.09 -26.47 -0.13 -2.26 16 23 C 0.06 0.74 7.03 37.37 0.26 1.00 16 24 O -0.32 -4.23 10.27 -19.26 -0.20 -4.43 16 25 C 0.13 1.76 6.47 -39.20 -0.25 1.50 16 26 C -0.15 -1.73 9.94 -39.34 -0.39 -2.12 16 27 C -0.09 -0.91 10.04 -39.66 -0.40 -1.31 16 28 C -0.15 -1.56 10.04 -39.61 -0.40 -1.96 16 29 C -0.08 -0.98 9.08 -39.53 -0.36 -1.33 16 30 C -0.15 -1.92 5.43 -104.44 -0.57 -2.49 16 31 H 0.05 0.65 7.07 -51.93 -0.37 0.28 16 32 H 0.09 1.64 5.76 -51.93 -0.30 1.34 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.10 1.54 5.85 -51.92 -0.30 1.24 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 0.98 7.61 -51.93 -0.39 0.58 16 39 H 0.04 1.12 7.42 -51.93 -0.39 0.73 16 40 H 0.04 0.92 7.21 -51.93 -0.37 0.54 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.09 1.18 6.12 -51.93 -0.32 0.86 16 43 H 0.09 1.14 7.42 -51.93 -0.39 0.75 16 44 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 45 H 0.10 1.63 6.57 -51.93 -0.34 1.29 16 46 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 49 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 50 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 51 H 0.13 1.32 6.37 -52.49 -0.33 0.99 16 LS Contribution 396.63 15.07 5.98 5.98 Total: -1.00 -31.45 396.63 -10.69 -42.13 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -7.97 Total: 5.84 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -3.89 Total: -16.01 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.34 Total: -37.48 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.12 Total: -16.96 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.45 -10.69 -42.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071910557.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.660 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds