Wall clock time and date at job start Tue Mar 31 2020 07:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47146 * 2 1 4 4 C 1.53005 * 109.46713 * 240.00352 * 2 1 3 5 5 C 1.52995 * 117.49938 * 128.75328 * 4 2 1 6 6 C 1.52994 * 117.50115 * 60.08915 * 4 2 1 7 7 N 1.46502 * 109.47053 * 120.00519 * 2 1 3 8 8 C 1.46506 * 120.00099 * 59.99711 * 7 2 1 9 9 C 1.50696 * 109.47077 * 269.99922 * 8 7 2 10 10 H 1.07998 * 119.99886 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00159 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99667 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00345 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46817 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47002 * 119.99904 * 13 11 9 16 16 H 1.48493 * 109.47468 * 240.00552 * 13 11 9 17 17 C 1.34776 * 119.99924 * 239.99502 * 7 2 1 18 18 O 1.21276 * 120.00114 * 180.02562 * 17 7 2 19 19 C 1.50698 * 119.99920 * 0.02562 * 17 7 2 20 20 C 1.52995 * 109.47153 * 174.04252 * 19 17 7 21 21 H 1.08996 * 109.40292 * 54.07320 * 20 19 17 22 22 C 1.53062 * 109.43927 * 294.18481 * 20 19 17 23 23 C 1.53407 * 108.31315 * 191.78364 * 22 20 19 24 24 O 1.42834 * 108.36444 * 64.72719 * 23 22 20 25 25 C 1.35842 * 117.85115 * 310.79277 * 24 23 22 26 26 C 1.39142 * 118.49419 * 197.11830 * 25 24 23 27 27 C 1.37970 * 120.21530 * 180.19953 * 26 25 24 28 28 C 1.38296 * 119.95649 * 0.02562 * 27 26 25 29 29 C 1.38105 * 119.98052 * 359.75840 * 28 27 26 30 30 C 1.38375 * 121.80590 * 17.19541 * 25 24 23 31 31 H 1.08995 * 109.46593 * 299.99795 * 1 2 3 32 32 H 1.09000 * 109.47140 * 59.99471 * 1 2 3 33 33 H 1.08997 * 109.47146 * 179.97438 * 1 2 3 34 34 H 1.09005 * 115.54622 * 274.41143 * 4 2 1 35 35 H 1.09004 * 117.50074 * 359.97438 * 5 4 2 36 36 H 1.08996 * 117.50515 * 145.01755 * 5 4 2 37 37 H 1.09008 * 117.49761 * 214.97789 * 6 4 2 38 38 H 1.08999 * 117.49956 * 359.97432 * 6 4 2 39 39 H 1.08997 * 109.47032 * 29.99914 * 8 7 2 40 40 H 1.09002 * 109.46602 * 149.99632 * 8 7 2 41 41 H 0.97005 * 119.99608 * 179.97438 * 12 11 9 42 42 H 1.09002 * 109.47732 * 54.03626 * 19 17 7 43 43 H 1.09003 * 109.47092 * 294.04265 * 19 17 7 44 44 H 1.08998 * 109.69734 * 72.07668 * 22 20 19 45 45 H 1.08998 * 109.72349 * 311.50726 * 22 20 19 46 46 H 1.09001 * 109.68537 * 305.01241 * 23 22 20 47 47 H 1.08997 * 109.68797 * 184.44674 * 23 22 20 48 48 H 1.08000 * 119.89382 * 0.17644 * 26 25 24 49 49 H 1.08002 * 120.02550 * 180.02562 * 27 26 25 50 50 H 1.07997 * 120.00689 * 179.90169 * 28 27 26 51 51 H 1.07998 * 119.83274 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.0763 0.0039 -2.1101 6 6 1.6374 -0.1482 -2.6096 7 7 2.0184 -0.6907 1.1961 8 6 1.6644 -2.0934 1.4279 9 6 0.3830 -2.1641 2.2178 10 1 -0.1179 -1.2552 2.5169 11 6 -0.1505 -3.3891 2.5578 12 7 0.4592 -4.4959 2.1931 13 14 -1.7385 -3.4769 3.5376 14 1 -2.2213 -2.1016 3.8220 15 1 -2.7648 -4.2087 2.7524 16 1 -1.4923 -4.1899 4.8166 17 6 2.7933 -0.0358 2.0833 18 8 3.1979 -0.6077 3.0732 19 6 3.1569 1.4071 1.8451 20 6 3.9104 1.9505 3.0608 21 1 4.7607 1.3042 3.2784 22 6 2.9720 1.9816 4.2696 23 6 3.6461 2.7944 5.3824 24 8 3.7805 4.1443 4.9353 25 6 4.3171 4.3550 3.7053 26 6 4.7884 5.6270 3.3957 27 6 5.3364 5.8816 2.1554 28 6 5.4178 4.8703 1.2156 29 6 4.9551 3.6054 1.5211 30 6 4.4027 3.3443 2.7641 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 2.1253 -1.8046 -1.1648 35 1 3.3946 0.9950 -1.7866 36 1 3.8431 -0.6023 -2.5923 37 1 1.4581 -0.8547 -3.4202 38 1 1.0089 0.7423 -2.6146 39 1 1.5294 -2.5969 0.4707 40 1 2.4629 -2.5820 1.9861 41 1 0.0840 -5.3578 2.4326 42 1 2.2490 1.9899 1.6901 43 1 3.7912 1.4809 0.9617 44 1 2.7872 0.9653 4.6175 45 1 2.0288 2.4517 3.9911 46 1 4.6308 2.3786 5.5957 47 1 3.0318 2.7651 6.2822 48 1 4.7246 6.4178 4.1285 49 1 5.7017 6.8700 1.9185 50 1 5.8453 5.0690 0.2439 51 1 5.0195 2.8175 0.7853 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071910558.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:44 Heat of formation + Delta-G solvation = -31.546944 kcal Electronic energy + Delta-G solvation = -31134.161248 eV Core-core repulsion = 27192.109790 eV Total energy + Delta-G solvation = -3942.051458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.88109 -39.37225 -37.53738 -37.48855 -35.18896 -34.41560 -32.61311 -30.70759 -30.30808 -29.70293 -29.40388 -27.08216 -24.51357 -23.80538 -23.60323 -22.81373 -22.13002 -21.80150 -20.09957 -19.79663 -18.13998 -17.91602 -17.02104 -16.55196 -16.43830 -15.79269 -15.46855 -15.19192 -14.87467 -14.53927 -14.39730 -14.28409 -13.98196 -13.64246 -13.48262 -13.28276 -13.07674 -12.68941 -12.54482 -12.46303 -12.14971 -12.01260 -11.80573 -11.64099 -11.49381 -11.30413 -11.27896 -11.16355 -10.91107 -10.83018 -10.63036 -10.59711 -10.42633 -10.26821 -10.23393 -9.99728 -9.81819 -9.49895 -8.98124 -8.74162 -8.43266 -8.18228 -7.65456 -6.04569 -4.07652 1.24342 1.36738 3.28225 3.29128 3.35409 3.37624 3.42425 3.67531 3.79302 4.06576 4.43312 4.58680 4.63927 4.78196 4.83767 4.87284 4.98960 5.09649 5.11566 5.20876 5.23726 5.30112 5.32119 5.35250 5.38705 5.43241 5.48164 5.50602 5.71167 5.72164 5.81093 5.84537 5.88177 5.91678 5.94340 5.98330 6.16522 6.20974 6.22932 6.28410 6.32855 6.42772 6.44390 6.50371 6.51363 6.73523 6.95658 7.08460 7.43220 7.45667 7.56236 7.92389 8.24617 8.43573 8.90882 9.09180 9.56638 11.03576 Molecular weight = 343.19amu Principal moments of inertia in cm(-1) A = 0.010772 B = 0.003684 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.776214 B = 7598.394953 C = 9472.461140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.169 3.831 3 H 0.075 0.925 4 C -0.155 4.155 5 C -0.184 4.184 6 C -0.175 4.175 7 N -0.589 5.589 8 C 0.247 3.753 9 C -0.517 4.517 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.895 5.895 13 Si 0.893 3.107 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.507 3.493 18 O -0.541 6.541 19 C -0.133 4.133 20 C -0.028 4.028 21 H 0.094 0.906 22 C -0.157 4.157 23 C 0.063 3.937 24 O -0.320 6.320 25 C 0.135 3.865 26 C -0.153 4.153 27 C -0.093 4.093 28 C -0.155 4.155 29 C -0.085 4.085 30 C -0.148 4.148 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.032 0.968 40 H 0.041 0.959 41 H 0.261 0.739 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.107 0.893 48 H 0.127 0.873 49 H 0.125 0.875 50 H 0.121 0.879 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.504 17.786 -4.950 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.064 3.936 3 H 0.093 0.907 4 C -0.174 4.174 5 C -0.221 4.221 6 C -0.212 4.212 7 N -0.320 5.320 8 C 0.128 3.872 9 C -0.556 4.556 10 H 0.077 0.923 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.721 3.279 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.210 1.210 17 C 0.294 3.706 18 O -0.419 6.419 19 C -0.173 4.173 20 C -0.046 4.046 21 H 0.112 0.888 22 C -0.195 4.195 23 C -0.012 4.012 24 O -0.234 6.234 25 C 0.090 3.910 26 C -0.172 4.172 27 C -0.111 4.111 28 C -0.173 4.173 29 C -0.103 4.103 30 C -0.149 4.149 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.132 0.868 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.125 0.875 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.125 0.875 48 H 0.145 0.855 49 H 0.143 0.857 50 H 0.139 0.861 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.617 17.386 -4.265 19.454 hybrid contribution -0.969 -0.437 0.277 1.099 sum 6.647 16.949 -3.987 18.637 Atomic orbital electron populations 1.22099 0.94314 1.04446 1.00354 1.20532 0.94937 0.94425 0.83681 0.90654 1.22761 1.02684 1.00700 0.91280 1.22998 0.92541 1.01723 1.04844 1.22888 0.97698 1.03153 0.97493 1.48249 1.48406 1.14768 1.20556 1.19225 0.96327 0.74843 0.96825 1.21458 1.07412 0.92350 1.34355 0.92344 1.24918 0.97573 0.95609 0.96039 1.69943 1.39415 0.97484 1.46607 0.86516 0.83322 0.78053 0.79976 1.19837 1.21059 1.20982 1.20228 0.79034 0.87908 0.83418 1.90636 1.54389 1.68925 1.27946 1.21819 1.01509 0.95107 0.98857 1.19752 0.98624 0.91523 0.94746 0.88846 1.22370 0.98523 1.03363 0.95195 1.23034 1.01173 0.79479 0.97507 1.85958 1.77436 1.29705 1.30341 1.18726 0.93853 0.93712 0.84690 1.20573 1.02935 0.95360 0.98339 1.20884 0.98331 0.99137 0.92716 1.21000 1.03192 0.93288 0.99857 1.20986 0.96758 0.96993 0.95544 1.19941 1.04250 0.95882 0.94847 0.92701 0.93165 0.89896 0.86803 0.89218 0.89157 0.88986 0.88892 0.94963 0.94083 0.92881 0.89511 0.89245 0.87532 0.90958 0.91718 0.87486 0.85525 0.85733 0.86055 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.31 37.16 0.31 -2.20 16 2 C 0.17 2.68 2.77 -67.93 -0.19 2.50 16 3 H 0.08 1.02 5.51 -51.93 -0.29 0.73 16 4 C -0.16 -2.27 5.15 -90.62 -0.47 -2.74 16 5 C -0.18 -2.16 10.18 -26.70 -0.27 -2.43 16 6 C -0.17 -2.04 9.74 -26.70 -0.26 -2.30 16 7 N -0.59 -11.78 2.39 -167.47 -0.40 -12.18 16 8 C 0.25 6.15 4.57 -5.19 -0.02 6.13 16 9 C -0.52 -13.96 7.83 -34.44 -0.27 -14.23 16 10 H 0.06 1.59 7.63 -52.49 -0.40 1.18 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 12 N -0.90 -26.03 13.29 55.43 0.74 -25.30 16 13 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 C 0.51 9.91 7.36 -10.99 -0.08 9.83 16 18 O -0.54 -12.60 13.87 5.56 0.08 -12.52 16 19 C -0.13 -1.92 3.21 -27.89 -0.09 -2.01 16 20 C -0.03 -0.40 2.02 -91.71 -0.18 -0.58 16 21 H 0.09 1.43 7.83 -51.93 -0.41 1.03 16 22 C -0.16 -2.27 5.08 -26.49 -0.13 -2.40 16 23 C 0.06 0.78 7.03 37.37 0.26 1.04 16 24 O -0.32 -4.36 10.27 -19.24 -0.20 -4.56 16 25 C 0.14 1.79 6.47 -39.20 -0.25 1.54 16 26 C -0.15 -1.74 9.94 -39.34 -0.39 -2.13 16 27 C -0.09 -0.90 10.04 -39.66 -0.40 -1.30 16 28 C -0.16 -1.54 10.05 -39.61 -0.40 -1.94 16 29 C -0.08 -0.96 9.09 -39.53 -0.36 -1.32 16 30 C -0.15 -1.93 5.43 -104.44 -0.57 -2.49 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.66 7.29 -51.93 -0.38 0.29 16 33 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 34 H 0.11 1.95 6.59 -51.93 -0.34 1.61 16 35 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 38 H 0.09 0.98 7.61 -51.93 -0.40 0.59 16 39 H 0.03 0.82 6.43 -51.93 -0.33 0.49 16 40 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.09 1.19 7.42 -51.93 -0.39 0.81 16 43 H 0.09 1.11 6.14 -51.93 -0.32 0.79 16 44 H 0.11 1.79 6.56 -51.93 -0.34 1.45 16 45 H 0.07 1.05 8.06 -51.93 -0.42 0.64 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 49 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 50 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 51 H 0.13 1.25 6.38 -52.49 -0.33 0.91 16 LS Contribution 399.41 15.07 6.02 6.02 Total: -1.00 -31.30 399.41 -10.67 -41.97 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -8.02 Total: 5.57 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -3.86 Total: -15.47 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.34 Total: -37.48 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.12 Total: -17.08 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.30 -10.67 -41.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071910558.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.418 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds