Wall clock time and date at job start Tue Mar 31 2020 07:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47146 * 2 1 4 4 C 1.53005 * 109.46713 * 240.00352 * 2 1 3 5 5 C 1.52995 * 117.49938 * 128.75328 * 4 2 1 6 6 C 1.52994 * 117.50115 * 60.08915 * 4 2 1 7 7 N 1.46502 * 109.47053 * 120.00519 * 2 1 3 8 8 C 1.46506 * 120.00099 * 59.99711 * 7 2 1 9 9 C 1.50696 * 109.47077 * 269.99922 * 8 7 2 10 10 H 1.07998 * 119.99886 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00159 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99667 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00345 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46817 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47002 * 119.99904 * 13 11 9 16 16 H 1.48493 * 109.47468 * 240.00552 * 13 11 9 17 17 C 1.34776 * 119.99924 * 239.99502 * 7 2 1 18 18 O 1.21276 * 120.00114 * 180.02562 * 17 7 2 19 19 C 1.50698 * 119.99920 * 0.02562 * 17 7 2 20 20 C 1.52995 * 109.47153 * 174.04252 * 19 17 7 21 21 H 1.08996 * 109.40292 * 54.07320 * 20 19 17 22 22 C 1.53062 * 109.43927 * 294.18481 * 20 19 17 23 23 C 1.53407 * 108.31315 * 191.78364 * 22 20 19 24 24 O 1.42834 * 108.36444 * 64.72719 * 23 22 20 25 25 C 1.35842 * 117.85115 * 310.79277 * 24 23 22 26 26 C 1.39142 * 118.49419 * 197.11830 * 25 24 23 27 27 C 1.37970 * 120.21530 * 180.19953 * 26 25 24 28 28 C 1.38296 * 119.95649 * 0.02562 * 27 26 25 29 29 C 1.38105 * 119.98052 * 359.75840 * 28 27 26 30 30 C 1.38375 * 121.80590 * 17.19541 * 25 24 23 31 31 H 1.08995 * 109.46593 * 299.99795 * 1 2 3 32 32 H 1.09000 * 109.47140 * 59.99471 * 1 2 3 33 33 H 1.08997 * 109.47146 * 179.97438 * 1 2 3 34 34 H 1.09005 * 115.54622 * 274.41143 * 4 2 1 35 35 H 1.09004 * 117.50074 * 359.97438 * 5 4 2 36 36 H 1.08996 * 117.50515 * 145.01755 * 5 4 2 37 37 H 1.09008 * 117.49761 * 214.97789 * 6 4 2 38 38 H 1.08999 * 117.49956 * 359.97432 * 6 4 2 39 39 H 1.08997 * 109.47032 * 29.99914 * 8 7 2 40 40 H 1.09002 * 109.46602 * 149.99632 * 8 7 2 41 41 H 0.97005 * 119.99608 * 179.97438 * 12 11 9 42 42 H 1.09002 * 109.47732 * 54.03626 * 19 17 7 43 43 H 1.09003 * 109.47092 * 294.04265 * 19 17 7 44 44 H 1.08998 * 109.69734 * 72.07668 * 22 20 19 45 45 H 1.08998 * 109.72349 * 311.50726 * 22 20 19 46 46 H 1.09001 * 109.68537 * 305.01241 * 23 22 20 47 47 H 1.08997 * 109.68797 * 184.44674 * 23 22 20 48 48 H 1.08000 * 119.89382 * 0.17644 * 26 25 24 49 49 H 1.08002 * 120.02550 * 180.02562 * 27 26 25 50 50 H 1.07997 * 120.00689 * 179.90169 * 28 27 26 51 51 H 1.07998 * 119.83274 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.0763 0.0039 -2.1101 6 6 1.6374 -0.1482 -2.6096 7 7 2.0184 -0.6907 1.1961 8 6 1.6644 -2.0934 1.4279 9 6 0.3830 -2.1641 2.2178 10 1 -0.1179 -1.2552 2.5169 11 6 -0.1505 -3.3891 2.5578 12 7 0.4592 -4.4959 2.1931 13 14 -1.7385 -3.4769 3.5376 14 1 -2.2213 -2.1016 3.8220 15 1 -2.7648 -4.2087 2.7524 16 1 -1.4923 -4.1899 4.8166 17 6 2.7933 -0.0358 2.0833 18 8 3.1979 -0.6077 3.0732 19 6 3.1569 1.4071 1.8451 20 6 3.9104 1.9505 3.0608 21 1 4.7607 1.3042 3.2784 22 6 2.9720 1.9816 4.2696 23 6 3.6461 2.7944 5.3824 24 8 3.7805 4.1443 4.9353 25 6 4.3171 4.3550 3.7053 26 6 4.7884 5.6270 3.3957 27 6 5.3364 5.8816 2.1554 28 6 5.4178 4.8703 1.2156 29 6 4.9551 3.6054 1.5211 30 6 4.4027 3.3443 2.7641 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 2.1253 -1.8046 -1.1648 35 1 3.3946 0.9950 -1.7866 36 1 3.8431 -0.6023 -2.5923 37 1 1.4581 -0.8547 -3.4202 38 1 1.0089 0.7423 -2.6146 39 1 1.5294 -2.5969 0.4707 40 1 2.4629 -2.5820 1.9861 41 1 0.0840 -5.3578 2.4326 42 1 2.2490 1.9899 1.6901 43 1 3.7912 1.4809 0.9617 44 1 2.7872 0.9653 4.6175 45 1 2.0288 2.4517 3.9911 46 1 4.6308 2.3786 5.5957 47 1 3.0318 2.7651 6.2822 48 1 4.7246 6.4178 4.1285 49 1 5.7017 6.8700 1.9185 50 1 5.8453 5.0690 0.2439 51 1 5.0195 2.8175 0.7853 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071910558.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:43 Heat of formation + Delta-G solvation = -47.504138 kcal Electronic energy + Delta-G solvation = -31134.853204 eV Core-core repulsion = 27192.109790 eV Total energy + Delta-G solvation = -3942.743414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.193 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.90690 -40.79438 -38.76438 -38.38323 -36.46142 -35.84541 -34.63544 -31.67860 -31.24431 -31.11262 -30.70659 -28.82478 -25.82005 -25.02852 -24.81724 -24.18287 -23.05425 -22.91918 -21.36795 -20.83256 -19.59034 -18.89442 -18.59473 -18.25732 -17.48167 -17.09204 -16.80583 -16.49991 -16.20009 -15.86384 -15.69782 -15.33384 -15.03323 -14.82280 -14.75496 -14.40219 -14.24780 -14.11019 -13.87009 -13.75325 -13.47739 -13.32825 -13.28146 -13.05384 -12.80959 -12.66182 -12.58078 -12.44703 -12.27801 -12.23060 -12.03939 -11.92164 -11.77056 -11.62950 -11.59513 -11.24431 -11.17503 -10.86168 -10.61436 -10.45958 -9.69653 -9.37641 -9.07243 -8.19507 -6.31025 0.40915 0.52902 1.34371 1.36490 1.47604 1.85473 2.26616 2.37315 2.43335 2.86261 3.01100 3.10412 3.47738 3.61661 3.70456 3.75198 3.87706 3.97141 4.08144 4.14503 4.18636 4.26091 4.27776 4.30885 4.35143 4.44823 4.53623 4.59145 4.61683 4.64802 4.69248 4.81819 4.82958 4.85322 4.93419 5.02684 5.09717 5.11707 5.12705 5.14543 5.18972 5.28815 5.34485 5.36877 5.42908 5.56367 5.59570 5.63616 5.65980 5.90048 5.93943 6.11884 6.49874 6.75248 6.86190 7.32399 7.52687 8.87847 Molecular weight = 343.19amu Principal moments of inertia in cm(-1) A = 0.010772 B = 0.003684 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.776214 B = 7598.394953 C = 9472.461140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.168 3.832 3 H 0.111 0.889 4 C -0.189 4.189 5 C -0.166 4.166 6 C -0.155 4.155 7 N -0.593 5.593 8 C 0.268 3.732 9 C -0.521 4.521 10 H 0.054 0.946 11 C 0.007 3.993 12 N -0.931 5.931 13 Si 0.959 3.041 14 H -0.267 1.267 15 H -0.272 1.272 16 H -0.284 1.284 17 C 0.498 3.502 18 O -0.589 6.589 19 C -0.116 4.116 20 C -0.023 4.023 21 H 0.073 0.927 22 C -0.155 4.155 23 C 0.067 3.933 24 O -0.330 6.330 25 C 0.109 3.891 26 C -0.162 4.162 27 C -0.087 4.087 28 C -0.150 4.150 29 C -0.091 4.091 30 C -0.162 4.162 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.020 0.980 40 H -0.008 1.008 41 H 0.264 0.736 42 H 0.103 0.897 43 H 0.120 0.880 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.124 0.876 48 H 0.137 0.863 49 H 0.156 0.844 50 H 0.151 0.849 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.595 21.578 -6.986 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.065 3.935 3 H 0.129 0.871 4 C -0.209 4.209 5 C -0.203 4.203 6 C -0.193 4.193 7 N -0.323 5.323 8 C 0.147 3.853 9 C -0.560 4.560 10 H 0.072 0.928 11 C -0.192 4.192 12 N -0.571 5.571 13 Si 0.784 3.216 14 H -0.191 1.191 15 H -0.198 1.198 16 H -0.210 1.210 17 C 0.287 3.713 18 O -0.470 6.470 19 C -0.155 4.155 20 C -0.041 4.041 21 H 0.092 0.908 22 C -0.193 4.193 23 C -0.008 4.008 24 O -0.245 6.245 25 C 0.064 3.936 26 C -0.180 4.180 27 C -0.104 4.104 28 C -0.168 4.168 29 C -0.109 4.109 30 C -0.163 4.163 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.132 0.868 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.132 0.868 39 H 0.038 0.962 40 H 0.010 0.990 41 H 0.073 0.927 42 H 0.121 0.879 43 H 0.138 0.862 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.142 0.858 48 H 0.155 0.845 49 H 0.174 0.826 50 H 0.169 0.831 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.704 21.213 -6.338 23.441 hybrid contribution -0.921 -1.586 0.852 2.022 sum 6.783 19.627 -5.486 21.478 Atomic orbital electron populations 1.22044 0.94724 1.02282 1.01663 1.20824 0.94651 0.95707 0.82312 0.87135 1.22517 1.07004 0.98814 0.92528 1.23136 0.92505 1.02152 1.02526 1.23010 0.98018 1.03331 0.94898 1.48252 1.48645 1.13080 1.22357 1.18581 0.93885 0.77824 0.95023 1.21672 1.07908 0.92205 1.34207 0.92810 1.25774 1.00972 0.95308 0.97115 1.70066 1.41122 0.98031 1.47899 0.85494 0.79469 0.78297 0.78344 1.19113 1.19779 1.21013 1.21197 0.77947 0.89822 0.82349 1.90613 1.56028 1.70451 1.29934 1.21770 1.02708 0.90792 1.00267 1.19614 0.97699 0.92507 0.94321 0.90847 1.22265 0.98872 1.01709 0.96414 1.23029 1.01324 0.79138 0.97295 1.85937 1.77909 1.29617 1.30994 1.19063 0.95152 0.94781 0.84625 1.20857 1.02837 0.94826 0.99512 1.21301 0.96808 1.00607 0.91713 1.21380 1.01902 0.92450 1.01055 1.21208 0.96481 0.98250 0.94961 1.19823 1.05794 0.94660 0.96019 0.93748 0.89375 0.93739 0.90696 0.86815 0.88797 0.88507 0.86767 0.96211 0.99040 0.92712 0.87926 0.86221 0.90738 0.91276 0.91617 0.85850 0.84481 0.82607 0.83099 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 8.31 71.98 0.60 -4.16 16 2 C 0.17 5.19 2.77 44.99 0.12 5.32 16 3 H 0.11 2.63 5.51 -2.39 -0.01 2.61 16 4 C -0.19 -5.42 5.15 -10.80 -0.06 -5.47 16 5 C -0.17 -3.38 10.18 30.62 0.31 -3.07 16 6 C -0.16 -3.15 9.74 30.62 0.30 -2.85 16 7 N -0.59 -24.64 2.39 -802.13 -1.91 -26.55 16 8 C 0.27 14.33 4.57 85.63 0.39 14.72 16 9 C -0.52 -29.56 7.83 25.60 0.20 -29.36 16 10 H 0.05 3.03 7.63 -2.91 -0.02 3.01 16 11 C 0.01 0.38 5.46 84.65 0.46 0.84 16 12 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 13 Si 0.96 45.27 29.54 68.60 2.03 47.29 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 16 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 17 C 0.50 20.11 7.36 87.66 0.64 20.76 16 18 O -0.59 -29.36 13.87 -3.02 -0.04 -29.40 16 19 C -0.12 -3.23 3.21 29.85 0.10 -3.13 16 20 C -0.02 -0.65 2.02 -11.50 -0.02 -0.67 16 21 H 0.07 2.35 7.83 -2.39 -0.02 2.34 16 22 C -0.15 -4.66 5.08 30.75 0.16 -4.50 16 23 C 0.07 1.69 7.03 72.12 0.51 2.20 16 24 O -0.33 -8.84 10.27 -91.77 -0.94 -9.78 16 25 C 0.11 2.73 6.47 22.52 0.15 2.88 16 26 C -0.16 -3.26 9.94 22.42 0.22 -3.04 16 27 C -0.09 -1.33 10.04 22.22 0.22 -1.11 16 28 C -0.15 -2.30 10.05 22.25 0.22 -2.08 16 29 C -0.09 -1.75 9.09 22.30 0.20 -1.55 16 30 C -0.16 -3.96 5.43 -19.75 -0.11 -4.07 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 2.10 7.29 -2.39 -0.02 2.08 16 33 H 0.04 1.75 6.92 -2.39 -0.02 1.74 16 34 H 0.07 2.73 6.59 -2.38 -0.02 2.72 16 35 H 0.11 1.79 8.05 -2.38 -0.02 1.77 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.11 1.86 7.61 -2.39 -0.02 1.85 16 39 H 0.02 1.10 6.43 -2.39 -0.02 1.08 16 40 H -0.01 -0.53 7.42 -2.39 -0.02 -0.55 16 41 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 42 H 0.10 2.58 7.42 -2.39 -0.02 2.56 16 43 H 0.12 2.60 6.14 -2.39 -0.01 2.59 16 44 H 0.07 2.71 6.56 -2.39 -0.02 2.70 16 45 H 0.07 2.06 8.06 -2.39 -0.02 2.04 16 46 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 48 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 49 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 50 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 51 H 0.14 2.20 6.38 -2.91 -0.02 2.18 16 Total: -1.00 -74.21 399.41 4.96 -69.25 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.92 Total: 23.85 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 4.62 Total: -18.35 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -1.63 Total: -82.87 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.98 Total: -39.18 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -74.21 4.96 -69.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071910558.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.749 kcal (2) G-P(sol) polarization free energy of solvation -74.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds