Wall clock time and date at job start Tue Mar 31 2020 07:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47683 * 2 1 4 4 C 1.52999 * 109.47423 * 120.00324 * 2 1 3 5 5 C 1.53005 * 117.49535 * 8.74040 * 4 2 1 6 6 C 1.53007 * 117.49521 * 300.08713 * 4 2 1 7 7 N 1.46509 * 109.46995 * 239.99903 * 2 1 3 8 8 C 1.46491 * 119.99955 * 300.00397 * 7 2 1 9 9 C 1.50699 * 109.47208 * 269.99672 * 8 7 2 10 10 H 1.07998 * 119.99863 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00507 * 179.97438 * 9 8 7 12 12 N 1.31523 * 119.99442 * 0.02562 * 11 9 8 13 13 Si 1.86790 * 120.00463 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47686 * 89.99783 * 13 11 9 15 15 H 1.48503 * 109.47297 * 210.00410 * 13 11 9 16 16 H 1.48501 * 109.47081 * 329.99693 * 13 11 9 17 17 C 1.34776 * 119.99816 * 119.99993 * 7 2 1 18 18 O 1.21282 * 119.99934 * 180.02562 * 17 7 2 19 19 C 1.50703 * 120.00036 * 0.02562 * 17 7 2 20 20 C 1.53005 * 109.47141 * 185.93041 * 19 17 7 21 21 H 1.09005 * 109.43286 * 306.09332 * 20 19 17 22 22 C 1.53066 * 109.43659 * 66.00829 * 20 19 17 23 23 C 1.53402 * 108.29696 * 168.27640 * 22 20 19 24 24 O 1.42832 * 108.37767 * 295.28406 * 23 22 20 25 25 C 1.35844 * 117.86192 * 49.16654 * 24 23 22 26 26 C 1.39150 * 118.49564 * 163.00629 * 25 24 23 27 27 C 1.37967 * 120.21286 * 179.73375 * 26 25 24 28 28 C 1.38292 * 119.95520 * 359.96299 * 27 26 25 29 29 C 1.38104 * 119.98844 * 0.06609 * 28 27 26 30 30 C 1.38374 * 121.80427 * 342.80557 * 25 24 23 31 31 H 1.08997 * 109.47683 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46758 * 300.00349 * 1 2 3 33 33 H 1.09004 * 109.46812 * 59.99472 * 1 2 3 34 34 H 1.08996 * 115.55452 * 154.41166 * 4 2 1 35 35 H 1.08998 * 117.49822 * 0.02562 * 5 4 2 36 36 H 1.08999 * 117.49818 * 145.01973 * 5 4 2 37 37 H 1.09005 * 117.49545 * 214.97839 * 6 4 2 38 38 H 1.08997 * 117.49806 * 359.97389 * 6 4 2 39 39 H 1.09003 * 109.47624 * 29.99863 * 8 7 2 40 40 H 1.08996 * 109.47465 * 149.99717 * 8 7 2 41 41 H 0.97003 * 119.99802 * 179.97438 * 12 11 9 42 42 H 1.08997 * 109.47235 * 65.92786 * 19 17 7 43 43 H 1.09005 * 109.47257 * 305.92864 * 19 17 7 44 44 H 1.09002 * 109.70060 * 48.57614 * 22 20 19 45 45 H 1.08998 * 109.70032 * 287.97600 * 22 20 19 46 46 H 1.09002 * 109.69000 * 175.55926 * 23 22 20 47 47 H 1.09003 * 109.71407 * 55.01952 * 23 22 20 48 48 H 1.07998 * 119.89098 * 359.75248 * 26 25 24 49 49 H 1.07998 * 120.01987 * 179.97438 * 27 26 25 50 50 H 1.08001 * 120.00152 * 179.79665 * 28 27 26 51 51 H 1.08000 * 119.84216 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.0108 -1.4566 2.1101 6 6 1.6341 -0.1507 2.6096 7 7 2.0183 -0.6907 -1.1962 8 6 1.6643 -2.0931 -1.4281 9 6 2.7030 -2.9843 -0.7972 10 1 3.5426 -2.5494 -0.2754 11 6 2.5809 -4.3549 -0.8853 12 7 1.5582 -4.8844 -1.5203 13 14 3.8680 -5.4594 -0.1027 14 1 3.4749 -5.7634 1.2966 15 1 3.9700 -6.7243 -0.8741 16 1 5.1827 -4.7689 -0.1087 17 6 2.7931 -0.0357 -2.0834 18 8 3.1970 -0.6073 -3.0739 19 6 3.1577 1.4070 -1.8446 20 6 3.9115 1.9505 -3.0601 21 1 4.7598 1.3024 -3.2803 22 6 2.9716 1.9872 -4.2677 23 6 3.6480 2.7989 -5.3799 24 8 3.7888 4.1475 -4.9310 25 6 4.3271 4.3543 -3.7010 26 6 4.8019 5.6245 -3.3892 27 6 5.3505 5.8753 -2.1483 28 6 5.4285 4.8622 -1.2103 29 6 4.9587 3.6002 -1.5166 30 6 4.4085 3.3420 -2.7611 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 3.0329 -1.1629 1.1646 35 1 -0.0295 -1.4267 1.7862 36 1 1.3268 -2.3817 2.5921 37 1 2.3599 -0.2173 3.4201 38 1 1.0040 0.7387 2.6146 39 1 0.6903 -2.3002 -0.9847 40 1 1.6236 -2.2852 -2.5002 41 1 1.4724 -5.8486 -1.5826 42 1 3.7920 1.4800 -0.9612 43 1 2.2500 1.9902 -1.6894 44 1 2.0310 2.4612 -3.9870 45 1 2.7823 0.9721 -4.6169 46 1 3.0325 2.7736 -6.2792 47 1 4.6306 2.3793 -5.5957 48 1 4.7406 6.4166 -4.1207 49 1 5.7184 6.8623 -1.9097 50 1 5.8608 5.0569 -0.2399 51 1 5.0205 2.8108 -0.7820 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071910559.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:49 Heat of formation + Delta-G solvation = -26.586980 kcal Electronic energy + Delta-G solvation = -31111.568993 eV Core-core repulsion = 27169.732615 eV Total energy + Delta-G solvation = -3941.836378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.193 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.89163 -39.40192 -37.59705 -37.51326 -35.12386 -34.26531 -32.63562 -30.72493 -30.30666 -29.60198 -29.37619 -26.98796 -24.46752 -24.39766 -23.67115 -22.72148 -21.94366 -21.71045 -19.89083 -19.72065 -17.94927 -17.82954 -16.94006 -16.50933 -16.43305 -15.83564 -15.71286 -15.14462 -14.92053 -14.65085 -14.34021 -14.27434 -13.99650 -13.74737 -13.38455 -13.28740 -13.09817 -12.81169 -12.52652 -12.40850 -12.29067 -11.79945 -11.73617 -11.61671 -11.40914 -11.26310 -11.11985 -11.00187 -10.91875 -10.86928 -10.75868 -10.63855 -10.51272 -10.31015 -10.24234 -9.83923 -9.48657 -9.44258 -8.98407 -8.74334 -8.40463 -8.18632 -7.66141 -6.02208 -4.04456 1.24816 1.36969 3.26947 3.28746 3.35453 3.37115 3.42446 3.67761 3.82861 4.28971 4.44929 4.59579 4.63767 4.76129 4.81773 4.99383 5.10542 5.13883 5.19790 5.23110 5.27413 5.32407 5.33478 5.38301 5.43902 5.45193 5.50072 5.55167 5.64401 5.74504 5.83024 5.86185 5.87400 5.93011 5.95233 6.07972 6.19193 6.22573 6.27230 6.27518 6.37095 6.43532 6.50223 6.52467 6.55716 6.73155 6.76690 7.13275 7.41764 7.47069 7.56326 7.94427 8.27139 8.44063 8.91723 9.09268 9.58993 11.06230 Molecular weight = 343.19amu Principal moments of inertia in cm(-1) A = 0.012420 B = 0.003298 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.914424 B = 8487.146511 C = 9356.572143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.167 3.833 3 H 0.080 0.920 4 C -0.141 4.141 5 C -0.166 4.166 6 C -0.193 4.193 7 N -0.590 5.590 8 C 0.249 3.751 9 C -0.511 4.511 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.892 3.108 14 H -0.282 1.282 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.506 3.494 18 O -0.540 6.540 19 C -0.133 4.133 20 C -0.029 4.029 21 H 0.095 0.905 22 C -0.156 4.156 23 C 0.062 3.938 24 O -0.320 6.320 25 C 0.134 3.866 26 C -0.154 4.154 27 C -0.093 4.093 28 C -0.154 4.154 29 C -0.084 4.084 30 C -0.148 4.148 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.033 0.967 40 H 0.040 0.960 41 H 0.261 0.739 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.065 0.935 48 H 0.127 0.873 49 H 0.125 0.875 50 H 0.122 0.878 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.984 19.414 1.754 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.062 3.938 3 H 0.098 0.902 4 C -0.160 4.160 5 C -0.202 4.202 6 C -0.230 4.230 7 N -0.321 5.321 8 C 0.130 3.870 9 C -0.550 4.550 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.208 1.208 15 H -0.212 1.212 16 H -0.200 1.200 17 C 0.293 3.707 18 O -0.418 6.418 19 C -0.173 4.173 20 C -0.048 4.048 21 H 0.113 0.887 22 C -0.193 4.193 23 C -0.012 4.012 24 O -0.235 6.235 25 C 0.089 3.911 26 C -0.172 4.172 27 C -0.111 4.111 28 C -0.173 4.173 29 C -0.102 4.102 30 C -0.149 4.149 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.131 0.869 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.083 0.917 48 H 0.145 0.855 49 H 0.143 0.857 50 H 0.140 0.860 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.026 19.034 1.019 19.168 hybrid contribution 0.696 -1.066 0.747 1.476 sum 2.723 17.968 1.765 18.259 Atomic orbital electron populations 1.22275 0.95649 1.03289 1.01116 1.20479 0.93726 0.94969 0.84600 0.90161 1.22601 1.00992 1.02683 0.89744 1.22953 0.98819 0.95064 1.03405 1.22997 1.04318 0.97899 0.97830 1.48287 1.49031 1.14358 1.20409 1.19202 0.95913 0.73938 0.97934 1.21367 1.08624 0.90776 1.34261 0.92612 1.24887 0.95672 0.97967 0.95529 1.69929 1.29544 1.11591 1.42490 0.86600 0.82099 0.80255 0.79081 1.20789 1.21211 1.20029 1.20267 0.79075 0.87826 0.83554 1.90640 1.53335 1.69144 1.28714 1.21827 1.01499 0.94963 0.99044 1.19766 0.98685 0.91639 0.94669 0.88724 1.22358 0.98523 1.03112 0.95332 1.23023 1.01201 0.79620 0.97381 1.85954 1.77436 1.29650 1.30420 1.18718 0.93998 0.93736 0.84636 1.20566 1.02960 0.95382 0.98311 1.20885 0.98331 0.99138 0.92717 1.21011 1.03031 0.93306 0.99912 1.21017 0.96593 0.97052 0.95555 1.19931 1.04327 0.95829 0.94821 0.90822 0.92144 0.92811 0.86940 0.88571 0.89209 0.89494 0.89433 0.94887 0.94244 0.92893 0.88993 0.89576 0.91034 0.87764 0.87544 0.91684 0.85542 0.85731 0.86021 0.85562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 7.77 37.16 0.29 -2.08 16 2 C 0.17 2.63 2.94 -67.93 -0.20 2.43 16 3 H 0.08 1.07 5.75 -51.93 -0.30 0.77 16 4 C -0.14 -2.28 4.81 -90.61 -0.44 -2.72 16 5 C -0.17 -2.57 9.57 -26.69 -0.26 -2.82 16 6 C -0.19 -2.48 9.90 -26.69 -0.26 -2.75 16 7 N -0.59 -11.72 2.39 -167.47 -0.40 -12.12 16 8 C 0.25 6.20 4.77 -5.20 -0.02 6.17 16 9 C -0.51 -13.80 8.35 -34.44 -0.29 -14.09 16 10 H 0.06 1.51 6.74 -52.49 -0.35 1.16 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 12 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 13 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 C 0.51 9.81 7.36 -10.98 -0.08 9.73 16 18 O -0.54 -12.54 13.88 5.56 0.08 -12.46 16 19 C -0.13 -1.91 3.21 -27.88 -0.09 -2.00 16 20 C -0.03 -0.41 2.01 -91.71 -0.18 -0.59 16 21 H 0.09 1.48 7.83 -51.93 -0.41 1.07 16 22 C -0.16 -2.11 5.08 -26.49 -0.13 -2.24 16 23 C 0.06 0.74 7.03 37.37 0.26 1.00 16 24 O -0.32 -4.21 10.27 -19.25 -0.20 -4.41 16 25 C 0.13 1.75 6.47 -39.19 -0.25 1.49 16 26 C -0.15 -1.72 9.94 -39.34 -0.39 -2.11 16 27 C -0.09 -0.91 10.04 -39.66 -0.40 -1.30 16 28 C -0.15 -1.56 10.04 -39.61 -0.40 -1.96 16 29 C -0.08 -0.97 9.08 -39.53 -0.36 -1.33 16 30 C -0.15 -1.92 5.43 -104.44 -0.57 -2.48 16 31 H 0.07 1.21 5.49 -51.93 -0.29 0.92 16 32 H 0.06 0.71 7.07 -51.93 -0.37 0.34 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.11 2.11 6.85 -51.93 -0.36 1.76 16 35 H 0.10 1.44 5.85 -51.93 -0.30 1.14 16 36 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 0.98 7.60 -51.93 -0.39 0.58 16 39 H 0.03 0.84 6.43 -51.93 -0.33 0.51 16 40 H 0.04 1.13 7.42 -51.93 -0.39 0.74 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.09 1.19 6.12 -51.93 -0.32 0.87 16 43 H 0.09 1.11 7.42 -51.93 -0.39 0.72 16 44 H 0.07 0.94 8.06 -51.93 -0.42 0.53 16 45 H 0.10 1.62 6.57 -51.93 -0.34 1.27 16 46 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 49 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 50 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 51 H 0.13 1.33 6.37 -52.49 -0.33 0.99 16 LS Contribution 394.72 15.07 5.95 5.95 Total: -1.00 -31.40 394.72 -10.53 -41.92 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.80 Total: 5.98 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -3.87 Total: -16.05 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.34 Total: -37.49 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.12 Total: -16.87 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.40 -10.53 -41.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071910559.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.338 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds